FvH4_2g21130

serine threonine protein phosphatase 2A regulatory subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
17599277 .. 17605416
6140 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21130.t4

Sequence Viewer

Length: 1623 bp
ATGGATATAGACGCAGTAGCAGGAGATATTACTTCTTTGGATCCTGAGCTTCTTCAGCTCCCGGAATTGTCGCCGTTTGCTCTCAAAGCCAGTCCCCAAATTGCCGACGACTTGTTCTCTCAGTGGCTCTCGCTCCCTCAGACTGGCCGCCTGGTGAAGTCTCTGATTGATGAGTCATCGTCAGGCATTTCTATCGGTACTCATGGGAACTCTCTTAGTGCAAATGCTGCCGGGATCAACTCACTGCCGTCCATGTTTCAGGCTGGAAGTACGCCCCCACTCTCACCGCGAAGTTCCTCTGGCTCTCCGCGCTTTTCCAAGCCGAAAACCAGCCCCTCTTCTTTGGGCTCTCCGCTGAAATTGGTTAGTGAACCAGTGAGAGAAGCCATTCCCCAGTTCTATTTTCAAAATGGTCGCCCACCACCTAACGGACTTAAGGAACAATGTCTTTCCAAAATTGATGACCTTTTCAGCAGTCATATGGATGGATTGCAAGTGCAGGAATTTAAGGCAGTTACAAAGGAAGTATGCAAGCTACCAACATTTTTATCTTCTGCTCTCTTTAGAAAGATAGATACTGGGTGCAGTGGGATAGTGACCAGGGATGCATTCATCAGATATTGGGTTGATGGCAATATGATGACAATGGATACAGCAACCCAAGTATTTAAAATTTTAAAGCAGCCTCATTGCAATTACCTTTCTCAGGTAGATTTCAAACCTCTGCTGCTAGAGCTTGTGGCAACCCACCCAGGATTGGAATTTTTGCATGGAACTCCTGAATTTCAAGAAAGATATGCTGAAACTGTCATTTACAGAATATTTTACTACATCAGTAGATCAGGAACTGGCCGTCTCACCCTCAGGGAGCTGAAACGAGGAAATCTAATTGCTGCTATGCAACATGCAGATGAGGAAGAGGATATTAATAAAGTTCTGAGGTACTTCTCTTATGAACATTTTTATGTAATATACTGCAAGTTTTGGGAGCTGGATACAGATCATGACTTCTTCATCGACAAAGAGAATCTCATTAGATATGGTAACCATGCCCTTACCTACAGGATTGTTGATAGAATATTTTCACAGGTTCCGCGGAAGTTTACTAGCAAGGTTGAAGGGAAGATGGGTTACGAAGATTTTGTATACTTCATGCTTTCAGAGGAGGATAAGTCATGTGAACCTAGCCTTGAGTATTGGTTCAAATGTATAGATTTGGATGGAAATGGAGTCCTTACACGGAATGAGTTGCAATTCTTTTATGAGGAGCAGTTGCACCGTATGGAATGCATGGCCCAAGAACCTGTTCTATTCGAGGATATTTTATGCCAAATAGTAGACATGATTGGACCTGAGAAGGAAGATTATTTCACACTAAGGGACTTGAAAGGTTGCAAACTTTCTGGAAATTTCTTCAACATCCTTTTCAACCTTAATAAGTTTATAGCGTTTGAAAGTCGTGATCCATTTCTTATTCGTCAGGAACGTGAGGATCCAAGTTTGACAGAGTGGGATCGCTTTGCACACAGAGAGTATATAAGGCTGTCAATGGAAGAAGATGGTGAGAATGCCTCTAATGGAAGTGTAGAAGTTTGGGATGAATCTCTGGAGGCTCCTTTCTAA

Protein Analysis

541

Amino Acids

61.85

Weight (kDa)

4.94

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_13 PF17958 217 - 306 1.7e-31 EF-hand domain
EF-hand_7 PF13499 322 - 421 5.2e-10 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1146, 1338
AccII CGCG 3 cut(s) 289, 310, 1096
AciI CCGC 6 cut(s) 148, 287, 308, 353, 1094, 1096
AclWI GGATC 7 cut(s) 35, 48, 242, 1457, 1487, 1500, 1521
AcoI YGGCCR 2 cut(s) 145, 850
AcsI RAATTY 5 cut(s) 503, 672, 761, 782, 1408
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 3 cut(s) 199, 271, 944
AfiI CCNNNNNNNGG 4 cut(s) 143, 428, 706, 757
AflII CTTAAG 1 cut(s) 434
AgsI TTSAA 9 cut(s) 407, 718, 788, 1118, 1204, 1387, 1417, 1429, 1454
AjnI CCWGG 3 cut(s) 150, 599, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 1290, 1322
AluBI AGCT 6 cut(s) 49, 58, 535, 736, 871, 991
AluI AGCT 6 cut(s) 49, 58, 535, 736, 871, 991
Alw26I GTCTC 2 cut(s) 165, 860
AlwI GGATC 7 cut(s) 35, 48, 242, 1457, 1487, 1500, 1521
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 3 cut(s) 145, 850, 1293
ApeKI GCWGC 4 cut(s) 227, 682, 727, 893
ApoI RAATTY 5 cut(s) 503, 672, 761, 782, 1408
AseI ATTAAT 1 cut(s) 927
Asp700I GAANNNNTTC 3 cut(s) 387, 1081, 1305
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 2 cut(s) 1294, 1349
AsuC2I CCSGG 2 cut(s) 62, 232
AsuHPI GGTGA 4 cut(s) 166, 276, 850, 1574
AvaII GGWCC 1 cut(s) 1349
AxyI CCTNAGG 1 cut(s) 863
BamHI GGATCC 2 cut(s) 40, 1492
BanII GRGCYC 1 cut(s) 350
BarI GAAGNNNNNNTAC 2 cut(s) 1115, 1147
BbvI GCAGC 4 cut(s) 214, 694, 714, 880
BccI CCATC 5 cut(s) 479, 623, 1120, 1214, 1553
BceAI ACGGC 3 cut(s) 58, 232, 837
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 3 cut(s) 152, 601, 753
BciVI GTATCC 2 cut(s) 643, 988
BcnI CCSGG 2 cut(s) 62, 232
BcoDI GTCTC 2 cut(s) 165, 860
BfaI CTAG 3 cut(s) 731, 1107, 1185
BfmI CTRYAG 1 cut(s) 1060
BfrI CTTAAG 1 cut(s) 434
BfuI GTATCC 2 cut(s) 643, 988
BisI GCNGC 5 cut(s) 148, 228, 683, 728, 894
BlsI GCNGC 5 cut(s) 149, 229, 684, 729, 895
Bme1390I CCNGG 5 cut(s) 62, 152, 232, 601, 753
Bme18I GGWCC 1 cut(s) 1349
BmgT120I GGNCC 2 cut(s) 1294, 1349
BmiI GGNNCC 4 cut(s) 42, 1092, 1494, 1614
BmrFI CCNGG 5 cut(s) 62, 152, 232, 601, 753
BmrI ACTGGG 2 cut(s) 388, 588
BmsI GCATC 1 cut(s) 595
BmuI ACTGGG 2 cut(s) 388, 588
BplI GAGNNNNNCTC 2 cut(s) 1556, 1588
Bpu10I CCTNAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 1211
BpuMI CCSGG 2 cut(s) 62, 232
BsaBI GATNNNNATC 1 cut(s) 999
BsaJI CCNNGG 3 cut(s) 600, 751, 1094
BsaXI ACNNNNNCTCC 2 cut(s) 1157, 1187
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 428, 706, 757
Bse1I ACTGG 6 cut(s) 90, 148, 374, 394, 583, 853
Bse21I CCTNAGG 1 cut(s) 863
Bse3DI GCAATG 1 cut(s) 688
Bse8I GATNNNNATC 1 cut(s) 999
BseBI CCWGG 3 cut(s) 152, 601, 753
BseDI CCNNGG 3 cut(s) 600, 751, 1094
BseGI GGATG 5 cut(s) 490, 610, 1225, 1419, 1603
BseJI GATNNNNATC 1 cut(s) 999
BseLI CCNNNNNNNGG 4 cut(s) 143, 428, 706, 757
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 7 cut(s) 36, 134, 152, 719, 877, 929, 1344
BseNI ACTGG 6 cut(s) 90, 148, 374, 394, 583, 853
BseRI GAGGAG 2 cut(s) 1178, 1280
BseXI GCAGC 4 cut(s) 214, 694, 714, 880
BsgI GTGCAG 2 cut(s) 518, 604
Bsh1236I CGCG 3 cut(s) 289, 310, 1096
BshFI GGCC 3 cut(s) 147, 852, 1295
BsiSI CCGG 2 cut(s) 62, 231
BslFI GGGAC 2 cut(s) 78, 1394
BslI CCNNNNNNNGG 4 cut(s) 143, 428, 706, 757
BsmAI GTCTC 2 cut(s) 165, 860
BsmBI CGTCTC 1 cut(s) 860
BsmFI GGGAC 2 cut(s) 78, 1394
BsmI GAATGC 3 cut(s) 608, 1292, 1573
BsnI GGCC 3 cut(s) 147, 852, 1295
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 7 cut(s) 40, 234, 839, 1000, 1462, 1492, 1513
BspACI CCGC 6 cut(s) 148, 287, 308, 353, 1094, 1096
BspANI GGCC 3 cut(s) 147, 852, 1295
BspCNI CTCAG 7 cut(s) 37, 133, 151, 718, 876, 930, 1345
BspFNI CGCG 3 cut(s) 289, 310, 1096
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 4 cut(s) 42, 1092, 1494, 1614
BspPI GGATC 7 cut(s) 35, 48, 242, 1457, 1487, 1500, 1521
BspTI CTTAAG 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 688
BsrI ACTGG 6 cut(s) 90, 148, 374, 394, 583, 853
BssECI CCNNGG 3 cut(s) 600, 751, 1094
BssMI GATC 7 cut(s) 40, 234, 839, 1000, 1462, 1492, 1513
BssNAI GTATAC 1 cut(s) 1147
Bst1107I GTATAC 1 cut(s) 1147
Bst2UI CCWGG 3 cut(s) 152, 601, 753
Bst4CI ACNGT 2 cut(s) 808, 1280
Bst6I CTCTTC 2 cut(s) 343, 912
BstAFI CTTAAG 1 cut(s) 434
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 9 cut(s) 45, 120, 138, 215, 705, 863, 938, 1353, 1376
BstDSI CCRYGG 1 cut(s) 1094
BstEII GGTNACC 1 cut(s) 1043
BstENI CCTNNNNNAGG 1 cut(s) 704
BstF5I GGATG 5 cut(s) 490, 610, 1225, 1419, 1603
BstFNI CGCG 3 cut(s) 289, 310, 1096
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 7 cut(s) 43, 237, 842, 1003, 1465, 1495, 1516
BstMAI GTCTC 2 cut(s) 165, 860
BstMBI GATC 7 cut(s) 40, 234, 839, 1000, 1462, 1492, 1513
BstMWI GCNNNNNNNGC 5 cut(s) 55, 86, 227, 309, 733
BstNI CCWGG 3 cut(s) 152, 601, 753
BstNSI RCATGY 1 cut(s) 908
BstPI GGTNACC 1 cut(s) 1043
BstSCI CCNGG 5 cut(s) 60, 150, 230, 599, 751
BstSFI CTRYAG 1 cut(s) 1060
BstUI CGCG 3 cut(s) 289, 310, 1096
BstV1I GCAGC 4 cut(s) 214, 694, 714, 880
BstX2I RGATCY 2 cut(s) 40, 1492
BstYI RGATCY 2 cut(s) 40, 1492
BstZ17I GTATAC 1 cut(s) 1147
Bsu36I CCTNAGG 1 cut(s) 863
BsuI GTATCC 2 cut(s) 643, 988
BsuRI GGCC 3 cut(s) 147, 852, 1295
BtgI CCRYGG 1 cut(s) 1094
BtsCI GGATG 5 cut(s) 490, 610, 1225, 1419, 1603
BtsI GCAGTG 2 cut(s) 242, 592
BtsIMutI CAGTG 4 cut(s) 128, 242, 381, 592
Cac8I GCNNGC 1 cut(s) 533
CaiI CAGNNNCTG 1 cut(s) 848
CciI TCATGA 1 cut(s) 1003
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 1294, 1349
Cfr42I CCGCGG 1 cut(s) 1097
CseI GACGC 1 cut(s) 20
Csp6I GTAC 3 cut(s) 198, 270, 943
CviQI GTAC 3 cut(s) 198, 270, 943
DdeI CTNAG 9 cut(s) 45, 120, 138, 215, 705, 863, 938, 1353, 1376
DpnI GATC 7 cut(s) 42, 236, 841, 1002, 1464, 1494, 1515
DpnII GATC 7 cut(s) 40, 234, 839, 1000, 1462, 1492, 1513
DraI TTTAAA 2 cut(s) 670, 678
EaeI YGGCCR 2 cut(s) 145, 850
Eam1104I CTCTTC 2 cut(s) 343, 912
EarI CTCTTC 2 cut(s) 343, 912
Eco24I GRGCYC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 1349
Eco57I CTGAAG 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 863
Eco91I GGTNACC 1 cut(s) 1043
EcoNI CCTNNNNNAGG 1 cut(s) 704
EcoO65I GGTNACC 1 cut(s) 1043
EcoRII CCWGG 3 cut(s) 150, 599, 751
EcoT22I ATGCAT 2 cut(s) 610, 1292
EcoT38I GRGCYC 1 cut(s) 350
Esp3I CGTCTC 1 cut(s) 860
FaqI GGGAC 2 cut(s) 78, 1394
FauNDI CATATG 1 cut(s) 480
FblI GTMKAC 2 cut(s) 1146, 1338
Fnu4HI GCNGC 5 cut(s) 148, 228, 683, 728, 894
FokI GGATG 5 cut(s) 497, 617, 1232, 1406, 1610
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 5 cut(s) 148, 228, 683, 728, 894
FspBI CTAG 3 cut(s) 731, 1107, 1185
GlaI GCGC 1 cut(s) 311
GluI GCNGC 5 cut(s) 148, 228, 683, 728, 894
HaeIII GGCC 3 cut(s) 147, 852, 1295
HapII CCGG 2 cut(s) 62, 231
HgaI GACGC 1 cut(s) 20
HhaI GCGC 1 cut(s) 312
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HinfI GANTC 4 cut(s) 173, 1027, 1230, 1601
HpaII CCGG 2 cut(s) 62, 231
HphI GGTGA 4 cut(s) 166, 276, 850, 1574
Hpy166II GTNNAC 5 cut(s) 371, 1104, 1147, 1181, 1339
Hpy188I TCNGA 5 cut(s) 141, 165, 617, 939, 1162
Hpy188III TCNNGA 9 cut(s) 44, 779, 788, 843, 1004, 1404, 1460, 1481, 1607
Hpy8I GTNNAC 5 cut(s) 371, 1104, 1147, 1181, 1339
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 1112, 1351
HpyCH4III ACNGT 2 cut(s) 808, 1280
HpyCH4IV ACGT 1 cut(s) 1486
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 86, 227, 309, 733
HpyF3I CTNAG 9 cut(s) 45, 120, 138, 215, 705, 863, 938, 1353, 1376
HpySE526I ACGT 1 cut(s) 1486
HspAI GCGC 1 cut(s) 310
KspI CCGCGG 1 cut(s) 1097
Kzo9I GATC 7 cut(s) 40, 234, 839, 1000, 1462, 1492, 1513
LmnI GCTCC 6 cut(s) 63, 138, 868, 988, 1267, 1618
Lsp1109I GCAGC 4 cut(s) 214, 694, 714, 880
LweI GCATC 1 cut(s) 595
MaeI CTAG 3 cut(s) 731, 1107, 1185
MaeII ACGT 1 cut(s) 1486
MaeIII GTNAC 4 cut(s) 514, 595, 1043, 1130
MalI GATC 7 cut(s) 42, 236, 841, 1002, 1464, 1494, 1515
MboI GATC 7 cut(s) 40, 234, 839, 1000, 1462, 1492, 1513
MflI RGATCY 2 cut(s) 40, 1492
MhlI GDGCHC 1 cut(s) 350
MlyI GAGTC 2 cut(s) 182, 1239
Mph1103I ATGCAT 2 cut(s) 610, 1292
MroXI GAANNNNTTC 3 cut(s) 387, 1081, 1305
MseI TTAA 6 cut(s) 435, 507, 669, 677, 927, 1434
MslI CAYNNNNRTG 3 cut(s) 483, 909, 963
MspA1I CMGCKG 2 cut(s) 355, 1096
MspCI CTTAAG 1 cut(s) 434
MspI CCGG 2 cut(s) 62, 231
MspR9I CCNGG 5 cut(s) 62, 152, 232, 601, 753
Mva1269I GAATGC 3 cut(s) 608, 1292, 1573
MvaI CCWGG 3 cut(s) 152, 601, 753
MvnI CGCG 3 cut(s) 289, 310, 1096
MwoI GCNNNNNNNGC 5 cut(s) 55, 86, 227, 309, 733
NciI CCSGG 2 cut(s) 62, 232
NdeI CATATG 1 cut(s) 480
NdeII GATC 7 cut(s) 40, 234, 839, 1000, 1462, 1492, 1513
NlaIV GGNNCC 4 cut(s) 42, 1092, 1494, 1614
NmuCI GTSAC 1 cut(s) 595
NsiI ATGCAT 2 cut(s) 610, 1292
NspI RCATGY 1 cut(s) 908
PagI TCATGA 1 cut(s) 1003
PcsI WCGNNNNNNNCGW 1 cut(s) 1483
PctI GAATGC 3 cut(s) 608, 1292, 1573
PdmI GAANNNNTTC 3 cut(s) 387, 1081, 1305
PfeI GAWTC 2 cut(s) 1027, 1601
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 5 cut(s) 149, 229, 684, 729, 895
PleI GAGTC 2 cut(s) 181, 1238
PpsI GAGTC 2 cut(s) 181, 1238
PshBI ATTAAT 1 cut(s) 927
Psp6I CCWGG 3 cut(s) 150, 599, 751
PspEI GGTNACC 1 cut(s) 1043
PspGI CCWGG 3 cut(s) 150, 599, 751
PspN4I GGNNCC 4 cut(s) 42, 1092, 1494, 1614
PspPI GGNCC 2 cut(s) 1294, 1349
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 2 cut(s) 40, 1492
RsaI GTAC 3 cut(s) 199, 271, 944
RsaNI GTAC 3 cut(s) 198, 270, 943
RseI CAYNNNNRTG 3 cut(s) 483, 909, 963
SacII CCGCGG 1 cut(s) 1097
SaqAI TTAA 6 cut(s) 435, 507, 669, 677, 927, 1434
SatI GCNGC 5 cut(s) 148, 228, 683, 728, 894
Sau3AI GATC 7 cut(s) 40, 234, 839, 1000, 1462, 1492, 1513
Sau96I GGNCC 2 cut(s) 1294, 1349
SchI GAGTC 2 cut(s) 182, 1239
ScrFI CCNGG 5 cut(s) 62, 152, 232, 601, 753
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 1 cut(s) 595
SfcI CTRYAG 1 cut(s) 1060
Sfr303I CCGCGG 1 cut(s) 1097
SgrBI CCGCGG 1 cut(s) 1097
SinI GGWCC 1 cut(s) 1349
SmiMI CAYNNNNRTG 3 cut(s) 483, 909, 963
SmlI CTYRAG 2 cut(s) 434, 1190
SmoI CTYRAG 2 cut(s) 434, 1190
SsiI CCGC 6 cut(s) 148, 287, 308, 353, 1094, 1096
SspI AATATT 2 cut(s) 822, 1080
SspMI CTAG 3 cut(s) 731, 1107, 1185
StyD4I CCNGG 5 cut(s) 60, 150, 230, 599, 751
TaaI ACNGT 2 cut(s) 808, 1280
TaiI ACGT 1 cut(s) 1489
TaqI TCGA 2 cut(s) 1017, 1314
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 2 cut(s) 1027, 1601
Tru1I TTAA 6 cut(s) 435, 507, 669, 677, 927, 1434
Tru9I TTAA 6 cut(s) 435, 507, 669, 677, 927, 1434
TscAI CASTG 4 cut(s) 128, 249, 381, 592
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 4 cut(s) 227, 682, 727, 893
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 5 cut(s) 601, 969, 1003, 1141, 1614
TspGWI ACGGA 2 cut(s) 444, 1255
TspRI CASTG 4 cut(s) 128, 249, 381, 592
Vha464I CTTAAG 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 1349
VspI ATTAAT 1 cut(s) 927
XagI CCTNNNNNAGG 1 cut(s) 704
XapI RAATTY 5 cut(s) 503, 672, 761, 782, 1408
XceI RCATGY 1 cut(s) 908
XmiI GTMKAC 2 cut(s) 1146, 1338
XmnI GAANNNNTTC 3 cut(s) 387, 1081, 1305
XspI CTAG 3 cut(s) 731, 1107, 1185
Zsp2I ATGCAT 2 cut(s) 610, 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.