Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004287

Physical Location & Seq

Genomic Coordinates Forward (+)

21139242 .. 21140928

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGATATAGACGCAGTAGCAGGGGATGTTGGTTCTTTGGATCCTGAGCTCTTACAGCTGCCGGAATTGTCTCCGTTCGTACTTAAAACCAGTCCCCAGATTGCTGAGGATTTGTTCACACAGTGGCTTTCGCTTCCGCAAACCGGCCGTTTGGTGAAGTCTCTAGTAGATGATGCAATAGCAGGAATTCCTATCAATGCCCTTGGGAACTCTTCAAGTGCAAATACTGCTGGGAGCAATGCGTTACCTTCCATGTTTCCGGCTGGAAGTACACCTCCACTTTCGCCGAGAAGTTCCTCTGGTTCTCCGCGCTTTTCAAAGCTGAAGACTAGTCCTTCTTCTCTTCGCTCTCCGCTAAAATTGGTTAGTGAACCAGTGCGAGAATCTATTCCTCAGTTCTATTTTCAAAACGGTCCACCACCACCAAAGGAACTTAAGGAGCAATGTCTTTCTAGAATTGATGACCTCTTCATTGGTCAGATGGATGGATTGCAACTGCACGAGTTTAAGTTGGTTACAAAGGAGTTATGCAAGCTGCCAACATTTTTCTCTTCTGCCCTCTTTAGAAAGATTGATACTAGCTGCAGCGGGATAGTGACGAGGTATGGATGCATTCATCAAATATTGGGTCGATGGAAATATGCTGACAATGGATACAACAACTCAAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

EF-hand_7 EF-hand_8

Protein Analysis

225

Amino Acids

24.35

Weight (kDa)

6.73

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03960 AT1G03960 AT1G03960 AT1G03960 AT1G03960 AT1G03960 AT1G03960 AT5G44090 AT5G44090
fragaria_vesca	FvH4_2g21130 FvH4_2g21130 FvH4_2g21130 FvH4_2g21130 FvH4_2g21130
malus_domestica	MD05G1194000.v1.1 MD10G1180700.v1.1
prunus_persica	Prupe.8G220600_v2.0.a1 Prupe.8G220600_v2.0.a1 Prupe.8G220600_v2.0.a1
pyrus_communis	pycom05g18130
rosa_chinensis	RchiOBHm_Chr6g0287621
rosa_laevigata	RLG00000012479
rosa_multiflora	Rmu_sc0004974.1_g000003 Rmu_sc0007029.1_g000005
rosa_roxburghii	Rroxscaffold_7G00181000 Rroxscaffold_7G00181340
rosa_rugosa	Rorug06G0190100 Rorug06G0190200
rosa_samantha	Rh6AG300700 Rh6BG306200 Rh6DG298100
rosa_wichuraiana	Rw6G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	310
AciI	CCGC	4 cut(s)	137, 308, 353, 588
AclWI	GGATC	2 cut(s)	35, 48
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	344
AdeI	CACNNNGTG	1 cut(s)	123
AfaI	GTAC	2 cut(s)	81, 271
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	216, 318, 407
AhlI	ACTAGT	1 cut(s)	329
AluBI	AGCT	5 cut(s)	49, 58, 322, 535, 582
AluI	AGCT	5 cut(s)	49, 58, 322, 535, 582
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	2 cut(s)	75, 165
AlwI	GGATC	2 cut(s)	35, 48
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	4 cut(s)	58, 535, 582, 585
ApoI	RAATTY	1 cut(s)	186
ArsI	GACNNNNNNTTYG	2 cut(s)	613, 645
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	4 cut(s)	45, 522, 569, 597
BccI	CCATC	3 cut(s)	475, 479, 627
BceAI	ACGGC	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	647
BcoDI	GTCTC	2 cut(s)	75, 165
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	4 cut(s)	164, 330, 453, 579
BfmI	CTRYAG	1 cut(s)	583
BfrI	CTTAAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	647
BisI	GCNGC	4 cut(s)	59, 536, 583, 586
BlsI	GCNGC	4 cut(s)	60, 537, 584, 587
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	42
BmsI	GCATC	2 cut(s)	163, 599
BpiI	GAAGAC	1 cut(s)	332
Bpu10I	CCTNAGC	2 cut(s)	45, 105
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	90, 374
Bse3DI	GCAATG	2 cut(s)	244, 449
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	3 cut(s)	31, 490, 614
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	2 cut(s)	244, 449
BseMII	CTCAG	3 cut(s)	36, 96, 407
BseNI	ACTGG	2 cut(s)	90, 374
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	4 cut(s)	45, 522, 569, 597
BseYI	CCCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	310
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	3 cut(s)	62, 144, 260
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	2 cut(s)	75, 165
BsmFI	GGGAC	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	612
BsnI	GGCC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	4 cut(s)	137, 308, 353, 588
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	3 cut(s)	37, 97, 406
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	587
BspPI	GGATC	2 cut(s)	35, 48
BspTI	CTTAAG	1 cut(s)	434
BsrDI	GCAATG	2 cut(s)	244, 449
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	90, 374
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	40
BssSI	CACGAG	1 cut(s)	500
BssT1I	CCWWGG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	123, 413
Bst6I	CTCTTC	4 cut(s)	217, 348, 473, 556
BstAFI	CTTAAG	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	533
BstDEI	CTNAG	3 cut(s)	45, 105, 393
BstF5I	GGATG	3 cut(s)	31, 490, 614
BstFNI	CGCG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	2 cut(s)	75, 165
BstMBI	GATC	1 cut(s)	40
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 227
BstSFI	CTRYAG	1 cut(s)	583
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	4 cut(s)	45, 522, 569, 597
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BstZI	CGGCCG	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	647
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	31, 490, 614
BtsIMutI	CAGTG	2 cut(s)	128, 381
Cac8I	GCNNGC	1 cut(s)	533
CfoI	GCGC	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	80, 270
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	8 cut(s)	49, 58, 127, 147, 263, 322, 535, 582
CviKI_1	RGCY	8 cut(s)	49, 58, 127, 147, 263, 322, 535, 582
CviQI	GTAC	2 cut(s)	80, 270
DdeI	CTNAG	3 cut(s)	45, 105, 393
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DraIII	CACNNNGTG	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	4 cut(s)	217, 348, 473, 556
EarI	CTCTTC	4 cut(s)	217, 348, 473, 556
Ecl136II	GAGCTC	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	413
Eco52I	CGGCCG	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	614
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	1 cut(s)	256
FaiI	YATR	5 cut(s)	8, 254, 529, 606, 642
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	581
Fnu4HI	GCNGC	4 cut(s)	59, 536, 583, 586
FokI	GGATG	3 cut(s)	38, 497, 621
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	4 cut(s)	59, 536, 583, 586
FspBI	CTAG	4 cut(s)	164, 330, 453, 579
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	4 cut(s)	59, 536, 583, 586
GsaI	CCCAGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	3 cut(s)	62, 144, 260
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	3 cut(s)	62, 144, 260
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	4 cut(s)	117, 272, 371, 416
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	2 cut(s)	44, 453
Hpy8I	GTNNAC	4 cut(s)	117, 272, 371, 416
HpyAV	CCTTC	2 cut(s)	258, 345
HpyCH4III	ACNGT	2 cut(s)	123, 413
HpyCH4V	TGCA	7 cut(s)	176, 221, 493, 499, 531, 585, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 227
HpyF3I	CTNAG	3 cut(s)	45, 105, 393
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	234, 439
Lsp1109I	GCAGC	4 cut(s)	45, 522, 569, 597
LweI	GCATC	2 cut(s)	163, 599
MaeI	CTAG	4 cut(s)	164, 330, 453, 579
MaeIII	GTNAC	3 cut(s)	243, 514, 595
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	6 cut(s)	204, 330, 335, 337, 460, 543
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	4 cut(s)	65, 186, 359, 456
MnlI	CCTC	7 cut(s)	100, 285, 307, 402, 476, 569, 594
Mph1103I	ATGCAT	1 cut(s)	614
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	4 cut(s)	84, 435, 507, 673
MspA1I	CMGCKG	2 cut(s)	58, 588
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	3 cut(s)	62, 144, 260
Mva1269I	GAATGC	1 cut(s)	612
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	55, 227
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	595
NsiI	ATGCAT	1 cut(s)	614
PctI	GAATGC	1 cut(s)	612
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	60, 537, 584, 587
Psp124BI	GAGCTC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	2 cut(s)	81, 271
RsaNI	GTAC	2 cut(s)	80, 270
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	4 cut(s)	84, 435, 507, 673
SatI	GCNGC	4 cut(s)	59, 536, 583, 586
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	9 cut(s)	51, 60, 250, 277, 324, 468, 537, 584, 605
SfaNI	GCATC	2 cut(s)	163, 599
SfcI	CTRYAG	1 cut(s)	583
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	4 cut(s)	65, 186, 359, 456
SsiI	CCGC	4 cut(s)	137, 308, 353, 588
SspI	AATATT	2 cut(s)	624, 670
SspMI	CTAG	4 cut(s)	164, 330, 453, 579
SstI	GAGCTC	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	123, 413
TaqI	TCGA	1 cut(s)	631
TasI	AATT	4 cut(s)	65, 186, 359, 456
TatI	WGTACW	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	4 cut(s)	84, 435, 507, 673
Tru9I	TTAA	4 cut(s)	84, 435, 507, 673
TscAI	CASTG	2 cut(s)	128, 381
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	4 cut(s)	58, 535, 582, 585
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	2 cut(s)	460, 605
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	2 cut(s)	128, 381
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	186
XbaI	TCTAGA	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	4 cut(s)	164, 330, 453, 579
Zsp2I	ATGCAT	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.