Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004287

Physical Location & Seq

Genomic Coordinates Reverse (-)

49371825 .. 49378242

Gene Structure 6418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGATGGATTGCAAGTGCAGGAGTTTAAGAAGGTTACAAAGGAAGTGTGCAAGCTACCGACATTTTTATCTTCTGCTCTCTTTAGAAAGATAGATACTGGCTGCAGTGGGATAGTGACCAGGGATGCATTCATCAGATATTGGGTTGATGGCAATATGATGACAATGGATACGGCAACTCAAGTATTTAAAATTTTAAAGCAGTCTGATTGCAATTACCTTACTCAGGTAGACTTCAAACCTGTACTTCTAGAGCTTGTGGCAACCCATCCAGGACTGGAATTTTTACATGGAACTCCTGAATTTCAAGAAAGATATGCTGAAACTGTCATTTACAGAATATTTTACTACATCAGTAGATCGGGAACTGGCCGTCTTACCCTTAGGGAGCTGAAACGAGGAAATCTTATTGCTGCTATGCAACATGCAGATGAGGAAGAGGATATTAATAAAGTTCTGAGGTACTTCTCTTATGAACATTTTTATGTAATATACTGCAAGTTTTGGGAGCTGGATACAGACCATGACTTCTTCATTGACAAAGAGAACCTCATTAGATATGGTAACCATGCCCTTACCTACAGGATCGTTGATAGAATATTTTCACAGGTTCCGAGGAAGTTTACTAGCAAGATCGAAGGGAAGATGGGTTATGAAGATTTTGTGTACTTCATGCTGTCAGAGGAGGATAAGTCATGTGAACCTAGCCTTGAGTATTGGTTCAAATGTATAGATTTGGATGGAAATGGAGTCCTTACACGGAATGAGTTGCAGTTCTTTTATGAGGAGCAGTTGCATCGTATGGAATGCATGGCCCAAGAACCTGTTCTATTCGAGGATATTTTATGCCAAATAGTCGACATGATTGGACCTGAGAAGGAAGATTATTTCACACTAAAGGACTTGAAAGGTTGCAAACTTTCTGGAAATTTCTTTAACATCCTTTTCAACCTCAATAAGTTCATAGCGTTTGAAAGTCGTGATCCATTTCTTATTCGTCAGGAACGCGAGGATCCAAGTTTGACAGAGTGGGATCGCTTTGCACACAGAGAGTATATAAGGCTTTCAATGGAAGAAGATGGTGAGAATGCCTCTAATGGAAGTGTAGAAGTTTGGGATGAATCATTGGAGGCTCCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

EF-hand_7 EF-hand_8

Protein Analysis

380

Amino Acids

44.96

Weight (kDa)

4.86

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_13	PF17958	57 - 146	2.6e-32	EF-hand domain
EF-hand_7	PF13499	162 - 261	2.7e-10	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03960 AT1G03960 AT1G03960 AT1G03960 AT1G03960 AT1G03960 AT1G03960 AT5G44090 AT5G44090
fragaria_vesca	FvH4_2g21130 FvH4_2g21130 FvH4_2g21130 FvH4_2g21130 FvH4_2g21130
malus_domestica	MD05G1194000.v1.1 MD10G1180700.v1.1
prunus_persica	Prupe.8G220600_v2.0.a1 Prupe.8G220600_v2.0.a1 Prupe.8G220600_v2.0.a1
pyrus_communis	pycom05g18130
rosa_chinensis	RchiOBHm_Chr6g0287621
rosa_laevigata	RLG00000012479
rosa_multiflora	Rmu_sc0004974.1_g000003 Rmu_sc0007029.1_g000005
rosa_roxburghii	Rroxscaffold_7G00181000 Rroxscaffold_7G00181340
rosa_rugosa	Rorug06G0190100 Rorug06G0190200
rosa_samantha	Rh6AG300700 Rh6BG306200 Rh6DG298100
rosa_wichuraiana	Rw6G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	231, 858
AccII	CGCG	1 cut(s)	1008
AclWI	GGATC	5 cut(s)	593, 977, 1007, 1020, 1041
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	4 cut(s)	192, 281, 302, 928
AfaI	GTAC	3 cut(s)	246, 464, 668
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	7 cut(s)	238, 308, 724, 907, 949, 974, 1068
AjnI	CCWGG	2 cut(s)	119, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	810, 842
AluBI	AGCT	4 cut(s)	55, 256, 391, 511
AluI	AGCT	4 cut(s)	55, 256, 391, 511
AlwI	GGATC	5 cut(s)	593, 977, 1007, 1020, 1041
AoxI	GGCC	2 cut(s)	370, 813
ApeKI	GCWGC	2 cut(s)	102, 413
ApoI	RAATTY	4 cut(s)	192, 281, 302, 928
AseI	ATTAAT	1 cut(s)	447
Asp700I	GAANNNNTTC	2 cut(s)	601, 825
AspS9I	GGNCC	2 cut(s)	814, 869
AsuHPI	GGTGA	1 cut(s)	1094
AvaII	GGWCC	1 cut(s)	869
AxyI	CCTNAGG	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	1012
BbvI	GCAGC	2 cut(s)	89, 400
BccI	CCATC	5 cut(s)	143, 276, 640, 734, 1073
BceAI	ACGGC	2 cut(s)	189, 357
BcgI	CGANNNNNNTGC	2 cut(s)	779, 813
BciT130I	CCWGG	2 cut(s)	121, 273
BciVI	GTATCC	2 cut(s)	163, 508
BfaI	CTAG	3 cut(s)	251, 627, 705
BfmI	CTRYAG	2 cut(s)	103, 580
BfuI	GTATCC	2 cut(s)	163, 508
BisI	GCNGC	2 cut(s)	103, 414
BlsI	GCNGC	2 cut(s)	104, 415
Bme1390I	CCNGG	2 cut(s)	121, 273
Bme18I	GGWCC	1 cut(s)	869
BmgT120I	GGNCC	2 cut(s)	814, 869
BmiI	GGNNCC	3 cut(s)	612, 1014, 1134
BmrFI	CCNGG	2 cut(s)	121, 273
BmsI	GCATC	2 cut(s)	115, 805
BplI	GAGNNNNNCTC	2 cut(s)	1076, 1108
BpuEI	CTTGAG	2 cut(s)	165, 731
BsaJI	CCNNGG	2 cut(s)	120, 614
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	3 cut(s)	103, 282, 373
Bse21I	CCTNAGG	1 cut(s)	383
BseBI	CCWGG	2 cut(s)	121, 273
BseDI	CCNNGG	2 cut(s)	120, 614
BseGI	GGATG	6 cut(s)	10, 130, 268, 745, 939, 1123
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	3 cut(s)	239, 449, 864
BseNI	ACTGG	3 cut(s)	103, 282, 373
BseRI	GAGGAG	2 cut(s)	698, 800
BseXI	GCAGC	2 cut(s)	89, 400
BsgI	GTGCAG	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	1008
BshFI	GGCC	2 cut(s)	372, 815
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmI	GAATGC	3 cut(s)	128, 812, 1093
BsnI	GGCC	2 cut(s)	372, 815
Bsp143I	GATC	6 cut(s)	359, 585, 633, 982, 1012, 1033
BspANI	GGCC	2 cut(s)	372, 815
BspCNI	CTCAG	3 cut(s)	238, 450, 865
BspFNI	CGCG	1 cut(s)	1008
BspLI	GGNNCC	3 cut(s)	612, 1014, 1134
BspMAI	CTGCAG	1 cut(s)	107
BspPI	GGATC	5 cut(s)	593, 977, 1007, 1020, 1041
BsrI	ACTGG	3 cut(s)	103, 282, 373
BssECI	CCNNGG	2 cut(s)	120, 614
BssMI	GATC	6 cut(s)	359, 585, 633, 982, 1012, 1033
Bst2UI	CCWGG	2 cut(s)	121, 273
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	4 cut(s)	225, 383, 458, 873
BstEII	GGTNACC	1 cut(s)	563
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	6 cut(s)	10, 130, 268, 745, 939, 1123
BstFNI	CGCG	1 cut(s)	1008
BstKTI	GATC	6 cut(s)	362, 588, 636, 985, 1015, 1036
BstMBI	GATC	6 cut(s)	359, 585, 633, 982, 1012, 1033
BstNI	CCWGG	2 cut(s)	121, 273
BstNSI	RCATGY	1 cut(s)	428
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	119, 271
BstSFI	CTRYAG	2 cut(s)	103, 580
BstUI	CGCG	1 cut(s)	1008
BstV1I	GCAGC	2 cut(s)	89, 400
BstX2I	RGATCY	1 cut(s)	1012
BstYI	RGATCY	1 cut(s)	1012
Bsu36I	CCTNAGG	1 cut(s)	383
BsuI	GTATCC	2 cut(s)	163, 508
BsuRI	GGCC	2 cut(s)	372, 815
BtsCI	GGATG	6 cut(s)	10, 130, 268, 745, 939, 1123
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	814, 869
Csp6I	GTAC	3 cut(s)	245, 463, 667
CviAII	CATG	8 cut(s)	290, 425, 524, 569, 673, 696, 811, 862
CviQI	GTAC	3 cut(s)	245, 463, 667
DdeI	CTNAG	4 cut(s)	225, 383, 458, 873
DpnI	GATC	6 cut(s)	361, 587, 635, 984, 1014, 1035
DpnII	GATC	6 cut(s)	359, 585, 633, 982, 1012, 1033
DraI	TTTAAA	2 cut(s)	190, 198
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	869
Eco81I	CCTNAGG	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	563
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	119, 271
EcoT22I	ATGCAT	2 cut(s)	130, 812
FaeI	CATG	8 cut(s)	293, 428, 527, 572, 676, 699, 814, 865
FatI	CATG	8 cut(s)	289, 424, 523, 568, 672, 695, 810, 861
FblI	GTMKAC	2 cut(s)	231, 858
Fnu4HI	GCNGC	2 cut(s)	103, 414
FokI	GGATG	6 cut(s)	17, 137, 255, 752, 926, 1130
Fsp4HI	GCNGC	2 cut(s)	103, 414
FspBI	CTAG	3 cut(s)	251, 627, 705
GluI	GCNGC	2 cut(s)	103, 414
HaeIII	GGCC	2 cut(s)	372, 815
Hin1II	CATG	8 cut(s)	293, 428, 527, 572, 676, 699, 814, 865
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HinfI	GANTC	2 cut(s)	750, 1121
HphI	GGTGA	1 cut(s)	1094
Hpy166II	GTNNAC	5 cut(s)	232, 624, 667, 701, 859
Hpy188I	TCNGA	5 cut(s)	137, 208, 459, 615, 682
Hpy188III	TCNNGA	7 cut(s)	251, 299, 308, 363, 924, 980, 1001
Hpy8I	GTNNAC	5 cut(s)	232, 624, 667, 701, 859
HpyAV	CCTTC	3 cut(s)	25, 632, 871
HpyCH4III	ACNGT	1 cut(s)	328
HpyF3I	CTNAG	4 cut(s)	225, 383, 458, 873
Hsp92II	CATG	8 cut(s)	293, 428, 527, 572, 676, 699, 814, 865
Kzo9I	GATC	6 cut(s)	359, 585, 633, 982, 1012, 1033
LmnI	GCTCC	4 cut(s)	388, 508, 787, 1138
Lsp1109I	GCAGC	2 cut(s)	89, 400
LweI	GCATC	2 cut(s)	115, 805
MaeI	CTAG	3 cut(s)	251, 627, 705
MaeIII	GTNAC	3 cut(s)	34, 115, 563
MalI	GATC	6 cut(s)	361, 587, 635, 984, 1014, 1035
MboI	GATC	6 cut(s)	359, 585, 633, 982, 1012, 1033
MboII	GAAGA	8 cut(s)	63, 449, 523, 655, 668, 893, 1085, 1088
MflI	RGATCY	1 cut(s)	1012
MluCI	AATT	5 cut(s)	192, 214, 281, 302, 928
MlyI	GAGTC	1 cut(s)	759
Mph1103I	ATGCAT	2 cut(s)	130, 812
MroXI	GAANNNNTTC	2 cut(s)	601, 825
MseI	TTAA	6 cut(s)	27, 189, 197, 447, 936, 1141
MslI	CAYNNNNRTG	2 cut(s)	429, 483
MspR9I	CCNGG	2 cut(s)	121, 273
Mva1269I	GAATGC	3 cut(s)	128, 812, 1093
MvaI	CCWGG	2 cut(s)	121, 273
MvnI	CGCG	1 cut(s)	1008
NdeII	GATC	6 cut(s)	359, 585, 633, 982, 1012, 1033
NlaIII	CATG	8 cut(s)	293, 428, 527, 572, 676, 699, 814, 865
NlaIV	GGNNCC	3 cut(s)	612, 1014, 1134
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	2 cut(s)	130, 812
NspI	RCATGY	1 cut(s)	428
PctI	GAATGC	3 cut(s)	128, 812, 1093
PdmI	GAANNNNTTC	2 cut(s)	601, 825
PfeI	GAWTC	1 cut(s)	1121
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	104, 415
PleI	GAGTC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	758
PshBI	ATTAAT	1 cut(s)	447
Psp6I	CCWGG	2 cut(s)	119, 271
PspEI	GGTNACC	1 cut(s)	563
PspGI	CCWGG	2 cut(s)	119, 271
PspN4I	GGNNCC	3 cut(s)	612, 1014, 1134
PspPI	GGNCC	2 cut(s)	814, 869
PstI	CTGCAG	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	1012
RsaI	GTAC	3 cut(s)	246, 464, 668
RsaNI	GTAC	3 cut(s)	245, 463, 667
RseI	CAYNNNNRTG	2 cut(s)	429, 483
SalI	GTCGAC	1 cut(s)	857
SaqAI	TTAA	6 cut(s)	27, 189, 197, 447, 936, 1141
SatI	GCNGC	2 cut(s)	103, 414
Sau3AI	GATC	6 cut(s)	359, 585, 633, 982, 1012, 1033
Sau96I	GGNCC	2 cut(s)	814, 869
SchI	GAGTC	1 cut(s)	759
ScrFI	CCNGG	2 cut(s)	121, 273
SfaNI	GCATC	2 cut(s)	115, 805
SfcI	CTRYAG	2 cut(s)	103, 580
SinI	GGWCC	1 cut(s)	869
SmiMI	CAYNNNNRTG	2 cut(s)	429, 483
SmlI	CTYRAG	2 cut(s)	180, 710
SmoI	CTYRAG	2 cut(s)	180, 710
Sse9I	AATT	5 cut(s)	192, 214, 281, 302, 928
SspI	AATATT	2 cut(s)	342, 600
SspMI	CTAG	3 cut(s)	251, 627, 705
StyD4I	CCNGG	2 cut(s)	119, 271
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	3 cut(s)	636, 834, 858
TasI	AATT	5 cut(s)	192, 214, 281, 302, 928
TatI	WGTACW	2 cut(s)	244, 666
TfiI	GAWTC	1 cut(s)	1121
Tru1I	TTAA	6 cut(s)	27, 189, 197, 447, 936, 1141
Tru9I	TTAA	6 cut(s)	27, 189, 197, 447, 936, 1141
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	102, 413
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	7 cut(s)	121, 489, 523, 661, 669, 952, 1134
TspGWI	ACGGA	1 cut(s)	775
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	869
VspI	ATTAAT	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	224
XapI	RAATTY	4 cut(s)	192, 281, 302, 928
XbaI	TCTAGA	1 cut(s)	250
XceI	RCATGY	1 cut(s)	428
XmiI	GTMKAC	2 cut(s)	231, 858
XmnI	GAANNNNTTC	2 cut(s)	601, 825
XspI	CTAG	3 cut(s)	251, 627, 705
Zsp2I	ATGCAT	2 cut(s)	130, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.