Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Forward (+)

30517740 .. 30521833

Gene Structure 4094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0190100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGTGTTTTGGGAAGGGTATGTGAGTGATGAGGCAATGGGGACGTTTGCACCAATTGTGGTTTACTGGTTGTATGCGGGGTTTTACCAGTTGTTGCCGCCGTTGGACAGTTACCGGTTGCACACTCGAAAAGAGGAGGACGAGAAGAACTCGGTGCCCCTTCCCTCTGTTGTAAAGGGTGTTTTGCTTCAACAGCTCGCTCAGGCCACCGTCGCTCAGGGGCTCTTTGTGTTAACCAAAAAGGCCAATACATCTGGTGTCACAATTCAGCCATCCATTCTTGTCCAGATTGTGCAGATTGTTGTTGCAATGCTAGTCATGGACACATGGCAATACTTTGTGCACCGCTACATGCATCAGAACAAGTTCTTGTACCGCCATGTCCACTCTCAGCACCACAGACTTGTTGTTCCCTACGCAATTGGAGCCCTTTATAACCACCCACTTGAGGGTCTCTTACTTGACACTTTCGGCGGGGCTATCTCTTTTCTAGTCTCGGGAATGACTGCACGGACGGCTGTTATATTCTTCTGCTTTGCTGTGATTAAAACAGTAGATGATCACTGTGGACTTTGGTTGCCTGGTAACATCTTCCACATTTTCTTCCAGAACAATACTGCTTATCATGACATTCATCATCAACTTCAGGGCTTGAAGTATAACTATTCTCAGCCATTCTTCCCGATATGGGATAAATTTTTTGGAACTTACATGCCTTACAGTCTTGTAAAGAGACCTGAGGGGGGTTTTGAAGCGAAGGCAATGAAAGCAATGAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

EF-hand_7 EF-hand_8

Protein Analysis

260

Amino Acids

29.82

Weight (kDa)

8.4

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	101 - 236	1.7e-26	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	154
AciI	CCGC	5 cut(s)	77, 98, 346, 376, 474
AcsI	RAATTY	1 cut(s)	695
AcuI	CTGAAG	1 cut(s)	629
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	4 cut(s)	448, 449, 688, 743
AgeI	ACCGGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	191, 655, 752
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	3 cut(s)	458, 499, 727
Alw44I	GTGCAC	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	496
AoxI	GGCC	2 cut(s)	204, 243
ApaLI	GTGCAC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	695
AsiGI	ACCGGT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	496
AxyI	CCTNAGG	1 cut(s)	738
BaeGI	GKGCMC	2 cut(s)	159, 345
BanI	GGYRCC	1 cut(s)	154
BanII	GRGCYC	2 cut(s)	225, 430
Bbv12I	GWGCWC	1 cut(s)	345
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	2 cut(s)	85, 531
BciT130I	CCWGG	1 cut(s)	582
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	3 cut(s)	458, 499, 727
BfaI	CTAG	3 cut(s)	314, 491, 781
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	582
BmeT110I	CYCGRG	1 cut(s)	496
BmiI	GGNNCC	2 cut(s)	156, 427
BmrFI	CCNGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	364
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
Bpu10I	CCTNAGC	2 cut(s)	201, 216
BpuEI	CTTGAG	1 cut(s)	467
BsaI	GGTCTC	2 cut(s)	458, 727
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	4 cut(s)	448, 449, 688, 743
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	71, 88
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	4 cut(s)	42, 315, 768, 777
BseBI	CCWGG	1 cut(s)	582
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	4 cut(s)	448, 449, 688, 743
BseMI	GCAATG	4 cut(s)	42, 315, 768, 777
BseMII	CTCAG	5 cut(s)	215, 230, 404, 683, 729
BseNI	ACTGG	2 cut(s)	71, 88
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	2 cut(s)	159, 345
BsgI	GTGCAG	2 cut(s)	314, 492
BshFI	GGCC	2 cut(s)	206, 245
BshNI	GGYRCC	1 cut(s)	154
BshTI	ACCGGT	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	448, 449, 688, 743
BsmAI	GTCTC	3 cut(s)	458, 499, 727
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	206, 245
Bso31I	GGTCTC	2 cut(s)	458, 727
BsoBI	CYCGRG	1 cut(s)	496
Bsp1286I	GDGCHC	4 cut(s)	159, 225, 345, 430
Bsp143I	GATC	1 cut(s)	559
BspACI	CCGC	5 cut(s)	77, 98, 346, 376, 474
BspANI	GGCC	2 cut(s)	206, 245
BspCNI	CTCAG	5 cut(s)	214, 229, 403, 682, 730
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	156, 427
BspT107I	GGYRCC	1 cut(s)	154
BspTNI	GGTCTC	2 cut(s)	458, 727
BsrDI	GCAATG	4 cut(s)	42, 315, 768, 777
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	71, 88
BssAI	RCCGGY	1 cut(s)	114
BssMI	GATC	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	5 cut(s)	110, 211, 553, 566, 722
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	5 cut(s)	201, 216, 390, 669, 738
BstF5I	GGATG	1 cut(s)	272
BstKTI	GATC	1 cut(s)	562
BstMAI	GTCTC	3 cut(s)	458, 499, 727
BstMBI	GATC	1 cut(s)	559
BstMWI	GCNNNNNNNGC	5 cut(s)	193, 212, 425, 515, 767
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	2 cut(s)	355, 715
BstSCI	CCNGG	1 cut(s)	580
BstSLI	GKGCMC	2 cut(s)	159, 345
Bsu36I	CCTNAGG	1 cut(s)	738
BsuRI	GGCC	2 cut(s)	206, 245
BtsCI	GGATG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	562
Cac8I	GCNNGC	1 cut(s)	198
CciI	TCATGA	1 cut(s)	625
Cfr10I	RCCGGY	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	373
CspAI	ACCGGT	1 cut(s)	114
CviAII	CATG	6 cut(s)	319, 327, 352, 380, 626, 712
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	5 cut(s)	201, 216, 390, 669, 738
DpnI	GATC	1 cut(s)	561
DpnII	GATC	1 cut(s)	559
Eco24I	GRGCYC	2 cut(s)	225, 430
Eco31I	GGTCTC	2 cut(s)	458, 727
Eco57I	CTGAAG	1 cut(s)	629
Eco81I	CCTNAGG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	580
EcoT22I	ATGCAT	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	225, 430
FaeI	CATG	6 cut(s)	322, 330, 355, 383, 629, 715
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	6 cut(s)	318, 326, 351, 379, 625, 711
FauI	CCCGC	2 cut(s)	70, 467
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	259
FriOI	GRGCYC	2 cut(s)	225, 430
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	3 cut(s)	314, 491, 781
GluI	GCNGC	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	206, 245
HapII	CCGG	1 cut(s)	115
Hin1II	CATG	6 cut(s)	322, 330, 355, 383, 629, 715
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HpaI	GTTAAC	1 cut(s)	234
HpaII	CCGG	1 cut(s)	115
Hpy166II	GTNNAC	5 cut(s)	64, 234, 343, 385, 569
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	5 cut(s)	286, 498, 607, 626, 682
Hpy8I	GTNNAC	5 cut(s)	64, 234, 343, 385, 569
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	8, 170, 751
HpyCH4III	ACNGT	5 cut(s)	110, 211, 553, 566, 722
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	7 cut(s)	50, 121, 295, 308, 343, 355, 509
HpyF10VI	GCNNNNNNNGC	5 cut(s)	193, 212, 425, 515, 767
HpyF3I	CTNAG	5 cut(s)	201, 216, 390, 669, 738
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	6 cut(s)	322, 330, 355, 383, 629, 715
Ksp22I	TGATCA	1 cut(s)	559
KspAI	GTTAAC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	559
LmnI	GCTCC	1 cut(s)	425
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	3 cut(s)	314, 491, 781
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	3 cut(s)	110, 259, 584
MalI	GATC	1 cut(s)	561
MboI	GATC	1 cut(s)	559
MboII	GAAGA	5 cut(s)	157, 520, 583, 595, 670
MfeI	CAATTG	2 cut(s)	54, 420
MhlI	GDGCHC	4 cut(s)	159, 225, 345, 430
MluCI	AATT	4 cut(s)	54, 264, 420, 695
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	6 cut(s)	25, 127, 130, 175, 442, 733
Mph1103I	ATGCAT	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	2 cut(s)	233, 546
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	582
MunI	CAATTG	2 cut(s)	54, 420
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	5 cut(s)	193, 212, 425, 515, 767
NdeII	GATC	1 cut(s)	559
NlaIII	CATG	6 cut(s)	322, 330, 355, 383, 629, 715
NlaIV	GGNNCC	2 cut(s)	156, 427
NmuCI	GTSAC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	357
NspI	RCATGY	2 cut(s)	355, 715
PagI	TCATGA	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	365
PinAI	ACCGGT	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	156, 427
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	233, 546
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	4 cut(s)	159, 225, 345, 430
SetI	ASST	3 cut(s)	47, 198, 739
SfaNI	GCATC	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	4 cut(s)	54, 264, 420, 695
SsiI	CCGC	5 cut(s)	77, 98, 346, 376, 474
SspMI	CTAG	3 cut(s)	314, 491, 781
StyD4I	CCNGG	1 cut(s)	580
TaaI	ACNGT	5 cut(s)	110, 211, 553, 566, 722
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	127
TasI	AATT	4 cut(s)	54, 264, 420, 695
TauI	GCSGC	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	233, 546
Tru9I	TTAA	2 cut(s)	233, 546
TscAI	CASTG	1 cut(s)	569
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	623, 779
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	1 cut(s)	569
VneI	GTGCAC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	695
XceI	RCATGY	2 cut(s)	355, 715
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	3 cut(s)	314, 491, 781
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.