Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Forward (+)

22449301 .. 22451386

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1223200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCTTTCAAGAGGTACGTTGAGATCGGAAGGGTGGCTCTCGTCAACTACGGCGAGGACTATGGGAAGCTCGTCGTCATCGTCGACGTCCTTGACCAGAACAGGGCTCTGGTTGATGCCCCTGATATGGTGAGGTCCCAAATGAATTTCAAGAGACTTTCTCTGACTGACATCAAAATCGAGATCAAGAGGGTCCCCAAGAAGAAGGAACTGCTTGCTGCCATGGAGACTGCTGATGTGAAGAAGAAGTGGGAGAACAGCTCGTGGGGTAGAAAACTGGTTGTTCAGAAGAGAAGGGCGGCTCTTAATGACTTTGATCGGTTCAAGCTCATGCTGGCTAAGATTAAGAAAGCTGGGCTTGTCAGAAATGAACTTGCAAAACTGAAGAAGCAGAGTGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

135

Amino Acids

15.45

Weight (kDa)

10.18

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14e	PF01929	45 - 117	3.1e-25	Ribosomal protein L14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	103, 127
AgsI	TTSAA	3 cut(s)	10, 151, 325
AluBI	AGCT	5 cut(s)	70, 261, 328, 353, 401
AluI	AGCT	5 cut(s)	70, 261, 328, 353, 401
Alw26I	GTCTC	2 cut(s)	148, 221
ApeKI	GCWGC	2 cut(s)	218, 398
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	135, 193
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	135, 193
BanII	GRGCYC	1 cut(s)	109
BauI	CACGAG	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	148, 221
BisI	GCNGC	3 cut(s)	219, 300, 399
BlsI	GCNGC	3 cut(s)	220, 301, 400
Bme18I	GGWCC	2 cut(s)	135, 193
BmgT120I	GGNCC	2 cut(s)	135, 193
BmiI	GGNNCC	3 cut(s)	137, 194, 195
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	4 cut(s)	145, 177, 245, 277
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 127
Bse1I	ACTGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	103, 127
BseNI	ACTGG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	353
BslFI	GGGAC	2 cut(s)	121, 179
BslI	CCNNNNNNNGG	2 cut(s)	103, 127
BsmAI	GTCTC	2 cut(s)	148, 221
BsmFI	GGGAC	2 cut(s)	121, 179
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	24, 183, 316
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	299
BspLI	GGNNCC	3 cut(s)	137, 194, 195
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	24, 183, 316
BssNI	GRCGYC	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	216, 336
BstDEI	CTNAG	2 cut(s)	339, 402
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	3 cut(s)	27, 186, 319
BstMAI	GTCTC	2 cut(s)	148, 221
BstMBI	GATC	3 cut(s)	24, 183, 316
BstV1I	GCAGC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	216, 336
Cfr13I	GGNCC	2 cut(s)	135, 193
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	223, 331
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	339, 402
DpnI	GATC	3 cut(s)	26, 185, 318
DpnII	GATC	3 cut(s)	24, 183, 316
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	135, 193
Eco57I	CTGAAG	1 cut(s)	404
EcoO109I	RGGNCCY	2 cut(s)	135, 193
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	226, 334
FaiI	YATR	4 cut(s)	63, 128, 224, 332
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	2 cut(s)	121, 179
FatI	CATG	2 cut(s)	222, 330
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	219, 300, 399
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	3 cut(s)	219, 300, 399
GluI	GCNGC	3 cut(s)	219, 300, 399
GsaI	CCCAGC	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	226, 334
HincII	GTYRAC	2 cut(s)	46, 85
HindII	GTYRAC	2 cut(s)	46, 85
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	46, 85
Hpy188I	TCNGA	4 cut(s)	29, 165, 288, 365
Hpy188III	TCNNGA	4 cut(s)	10, 151, 181, 187
Hpy8I	GTNNAC	2 cut(s)	46, 85
Hpy99I	CGWCG	3 cut(s)	77, 86, 89
HpyAV	CCTTC	3 cut(s)	24, 199, 288
HpyCH4IV	ACGT	2 cut(s)	18, 87
HpyCH4V	TGCA	2 cut(s)	377, 398
HpyF3I	CTNAG	2 cut(s)	339, 402
HpySE526I	ACGT	2 cut(s)	18, 87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	226, 334
KflI	GGGWCCC	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	24, 183, 316
LpnPI	CCDG	7 cut(s)	88, 95, 110, 135, 263, 320, 339
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	2 cut(s)	18, 87
MalI	GATC	3 cut(s)	26, 185, 318
MboI	GATC	3 cut(s)	24, 183, 316
MboII	GAAGA	5 cut(s)	214, 253, 256, 301, 397
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	4 cut(s)	6, 49, 126, 183
MseI	TTAA	2 cut(s)	306, 345
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	3 cut(s)	24, 183, 316
NlaIII	CATG	2 cut(s)	226, 334
NlaIV	GGNNCC	3 cut(s)	137, 194, 195
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 81
PkrI	GCNGC	3 cut(s)	220, 301, 400
PpuMI	RGGWCCY	2 cut(s)	135, 193
Psp5II	RGGWCCY	2 cut(s)	135, 193
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	3 cut(s)	137, 194, 195
PspPI	GGNCC	2 cut(s)	135, 193
PspPPI	RGGWCCY	2 cut(s)	135, 193
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	306, 345
SatI	GCNGC	3 cut(s)	219, 300, 399
Sau3AI	GATC	3 cut(s)	24, 183, 316
Sau96I	GGNCC	2 cut(s)	135, 193
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	9 cut(s)	17, 21, 72, 90, 137, 263, 330, 355, 403
SfaNI	GCATC	1 cut(s)	106
SgrDI	CGTCGACG	1 cut(s)	83
SinI	GGWCC	2 cut(s)	135, 193
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	2 cut(s)	21, 90
TaqI	TCGA	2 cut(s)	84, 180
TasI	AATT	1 cut(s)	145
TauI	GCSGC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	306, 345
Tru9I	TTAA	2 cut(s)	306, 345
TseI	GCWGC	2 cut(s)	218, 398
TspDTI	ATGAA	2 cut(s)	158, 384
VpaK11BI	GGWCC	2 cut(s)	135, 193
XapI	RAATTY	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	84
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.