Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Forward (+)

3197296 .. 3199496

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G044700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCTTTCAAGAGATACGTCGAGATCGGGAGGGTGGCTCTCGTTAACTACGGCGAGGACTATGGGAAACTCGTCGTCATTGTCGACGTCCTTGACCAGAACCGAGCTCTTGTTGATGCCCCTGATATGGTGAGATCCCAAATGAATTTCAAGAGACTTTCCCTAACTGACATCAAAATTGACATCAAAAGGGTCCCCAAGAAGAAGGAACTGCTTGCTGCCATGGAGGCTGCTGATGTGAAGAAGAAGTGGGAGAATAGCTCTTGGGGTAGGAAGCTGATTGTTCAGAAGAGAAGGGCAGCTCTTAATGACTTTGATCGATTCAAGCTCATGCTCGCTAAGATTAAGAGAGCTGGGCTGGTGAGAACCGAGCTTGCAAAACTGAAGAAGGAGAGTGCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

135

Amino Acids

15.45

Weight (kDa)

10.15

Isoelectric Point (pI)

26.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	10, 151, 325
AluBI	AGCT	7 cut(s)	107, 261, 277, 302, 328, 353, 373
AluI	AGCT	7 cut(s)	107, 261, 277, 302, 328, 353, 373
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	129
ApeKI	GCWGC	3 cut(s)	218, 230, 299
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	142, 373
AvaII	GGWCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	205, 217, 311
BceAI	ACGGC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	3 cut(s)	219, 231, 300
BlsI	GCNGC	3 cut(s)	220, 232, 301
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	194, 195
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	4 cut(s)	22, 54, 245, 277
Bsa29I	ATCGAT	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	205, 217, 311
BseYI	CCCAGC	1 cut(s)	353
BshVI	ATCGAT	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	24, 134, 316
Bsp19I	CCATGG	1 cut(s)	222
BspDI	ATCGAT	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	194, 195
BspPI	GGATC	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	24, 134, 316
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	216, 336, 375
BstDEI	CTNAG	2 cut(s)	339, 402
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	3 cut(s)	27, 137, 319
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	3 cut(s)	24, 134, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	205, 217, 311
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	319
BsuTUI	ATCGAT	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	216, 336, 375
Cfr13I	GGNCC	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	319
CviAII	CATG	2 cut(s)	223, 331
DdeI	CTNAG	2 cut(s)	339, 402
DpnI	GATC	3 cut(s)	26, 136, 318
DpnII	GATC	3 cut(s)	24, 134, 316
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	226, 334
FaiI	YATR	4 cut(s)	63, 128, 224, 332
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	222, 330
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	219, 231, 300
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	3 cut(s)	219, 231, 300
GluI	GCNGC	3 cut(s)	219, 231, 300
GsaI	CCCAGC	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	226, 334
HincII	GTYRAC	2 cut(s)	46, 85
HindII	GTYRAC	2 cut(s)	46, 85
HinfI	GANTC	1 cut(s)	321
HpaI	GTTAAC	1 cut(s)	46
HphI	GGTGA	2 cut(s)	142, 373
Hpy166II	GTNNAC	2 cut(s)	46, 85
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	4 cut(s)	10, 22, 28, 151
Hpy8I	GTNNAC	2 cut(s)	46, 85
Hpy99I	CGWCG	3 cut(s)	23, 77, 89
HpyAV	CCTTC	3 cut(s)	199, 288, 382
HpyCH4IV	ACGT	2 cut(s)	18, 87
HpyCH4V	TGCA	2 cut(s)	377, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	339, 402
HpySE526I	ACGT	2 cut(s)	18, 87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	226, 334
KflI	GGGWCCC	1 cut(s)	193
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	24, 134, 316
LpnPI	CCDG	4 cut(s)	110, 135, 339, 344
Lsp1109I	GCAGC	3 cut(s)	205, 217, 311
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	2 cut(s)	18, 87
MalI	GATC	3 cut(s)	26, 136, 318
MboI	GATC	3 cut(s)	24, 134, 316
MboII	GAAGA	5 cut(s)	214, 253, 256, 301, 397
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	2 cut(s)	145, 177
MnlI	CCTC	3 cut(s)	24, 49, 220
MseI	TTAA	3 cut(s)	45, 306, 345
MwoI	GCNNNNNNNGC	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	3 cut(s)	24, 134, 316
NlaIII	CATG	2 cut(s)	226, 334
NlaIV	GGNNCC	2 cut(s)	194, 195
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	3 cut(s)	220, 232, 301
PpuMI	RGGWCCY	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	194, 195
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	45, 306, 345
SatI	GCNGC	3 cut(s)	219, 231, 300
Sau3AI	GATC	3 cut(s)	24, 134, 316
Sau96I	GGNCC	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	9 cut(s)	21, 90, 109, 263, 279, 304, 330, 355, 375
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	193
Sse9I	AATT	2 cut(s)	145, 177
SstI	GAGCTC	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	2 cut(s)	21, 90
TaqI	TCGA	3 cut(s)	21, 84, 319
TasI	AATT	2 cut(s)	145, 177
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	3 cut(s)	45, 306, 345
Tru9I	TTAA	3 cut(s)	45, 306, 345
TseI	GCWGC	3 cut(s)	218, 230, 299
TspDTI	ATGAA	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	84
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.