Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Forward (+)

20907232 .. 20916762

Gene Structure 9531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1218000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCTTTCAAGAGGTACGTCGAGATCGGAAGGGTGGCTCTCGTCAACTACGAAGAGGACTACGGGAAGCTCGTCGTCATCGTCGATGTCCTTGACCAGAACAGGGCTCTGGTTGATGCCCCTGATATGGTGAGGTCCCAAATGAATTTCAAGAGACTTTCTCTCACTGACATCAAAATCGACATCAAGAGGGTCCCCAAGAAGAAGGAACTGGTTGCTGCCATGGAGGCCGCTGATATGAAGAAGAAGTGGGAGAACAGTTCGTGGGGTAGAAAACTGATTGTTCAGAAGAGAAGGGCGGCTCTTGATGACTTTGATCGGTTCAAGCTCATGCTGGCTAAGATTAAGAAAGTTGGGCTTGTCAGGAATGAGCTTGCGAAACTGAAGAAGCAGAGTGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

135

Amino Acids

15.53

Weight (kDa)

10.03

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14e	PF01929	45 - 117	1.4e-24	Ribosomal protein L14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	231, 299
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	103, 127
AgsI	TTSAA	3 cut(s)	10, 151, 325
AluBI	AGCT	4 cut(s)	70, 328, 373, 401
AluI	AGCT	4 cut(s)	70, 328, 373, 401
Alw26I	GTCTC	1 cut(s)	148
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	218, 398
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	135, 193
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	135, 193
BanII	GRGCYC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	4 cut(s)	219, 231, 300, 399
BlsI	GCNGC	4 cut(s)	220, 232, 301, 400
Bme18I	GGWCC	2 cut(s)	135, 193
BmgT120I	GGNCC	2 cut(s)	135, 193
BmiI	GGNNCC	3 cut(s)	137, 194, 195
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 127
Bse1I	ACTGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	103, 127
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	230
BslFI	GGGAC	2 cut(s)	121, 179
BslI	CCNNNNNNNGG	2 cut(s)	103, 127
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	121, 179
BsnI	GGCC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	24, 316
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	2 cut(s)	231, 299
BspANI	GGCC	1 cut(s)	230
BspLI	GGNNCC	3 cut(s)	137, 194, 195
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	24, 316
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	2 cut(s)	48, 284
BstC8I	GCNNGC	2 cut(s)	336, 375
BstDEI	CTNAG	2 cut(s)	339, 402
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	27, 319
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	2 cut(s)	24, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	336, 375
Cfr13I	GGNCC	2 cut(s)	135, 193
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	223, 331
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	339, 402
DpnI	GATC	2 cut(s)	26, 318
DpnII	GATC	2 cut(s)	24, 316
Eam1104I	CTCTTC	2 cut(s)	48, 284
EarI	CTCTTC	2 cut(s)	48, 284
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	135, 193
Eco57I	CTGAAG	1 cut(s)	404
EcoO109I	RGGNCCY	2 cut(s)	135, 193
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	226, 334
FaiI	YATR	4 cut(s)	128, 224, 239, 332
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	2 cut(s)	121, 179
FatI	CATG	2 cut(s)	222, 330
Fnu4HI	GCNGC	4 cut(s)	219, 231, 300, 399
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	4 cut(s)	219, 231, 300, 399
GluI	GCNGC	4 cut(s)	219, 231, 300, 399
HaeIII	GGCC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	226, 334
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	29, 288
Hpy188III	TCNNGA	6 cut(s)	10, 22, 151, 187, 305, 364
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	3 cut(s)	23, 77, 86
HpyAV	CCTTC	3 cut(s)	24, 199, 288
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	339, 402
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	226, 334
KflI	GGGWCCC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	24, 316
LpnPI	CCDG	7 cut(s)	88, 95, 110, 135, 197, 320, 349
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	18
MalI	GATC	2 cut(s)	26, 318
MboI	GATC	2 cut(s)	24, 316
MboII	GAAGA	6 cut(s)	65, 214, 253, 256, 301, 397
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	5 cut(s)	6, 49, 126, 183, 220
MseI	TTAA	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	24, 316
NlaIII	CATG	2 cut(s)	226, 334
NlaIV	GGNNCC	3 cut(s)	137, 194, 195
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 69, 78, 81
PkrI	GCNGC	4 cut(s)	220, 232, 301, 400
PpuMI	RGGWCCY	2 cut(s)	135, 193
Psp5II	RGGWCCY	2 cut(s)	135, 193
PspN4I	GGNNCC	3 cut(s)	137, 194, 195
PspPI	GGNCC	2 cut(s)	135, 193
PspPPI	RGGWCCY	2 cut(s)	135, 193
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	4 cut(s)	219, 231, 300, 399
Sau3AI	GATC	2 cut(s)	24, 316
Sau96I	GGNCC	2 cut(s)	135, 193
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	7 cut(s)	17, 21, 72, 137, 330, 375, 403
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	2 cut(s)	135, 193
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	2 cut(s)	231, 299
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	21, 84, 180
TasI	AATT	1 cut(s)	145
TauI	GCSGC	2 cut(s)	233, 302
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	2 cut(s)	218, 398
TspDTI	ATGAA	2 cut(s)	158, 254
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	135, 193
XapI	RAATTY	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.