Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Forward (+)

20443889 .. 20445691

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1215500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCCTTTCAAGAGGTACGTCGAGATCGGAAGGGTGGCTCTGGTCAACTACGGAGAGGACTACGGGAAGCTCGTCGTCATCGTCGACGTCCTTGACCAGAACAGGGCTCTTGTCGATGCTCCTGATATGGTGAGGTCCCAAATGAACTTCAAGAGGCTTTCTCTCACCGACATCAAGATTGATATCAAGAGGGTCCCCAAGAAGAAGGAATTGCTTGCCGCAATGGAAGCTGCTGATGTGAAGAAGAAGTGGGAGAACAGCTCATGGGGTAGGAAACTGATTGTTCAGAAGAGAAGAGCAGCTCTCAACGACTTTGACCGATTCAAGCTCATGTTGGCTAAGATTAAGAGGGCTGGACTGGTAAGGAGCGAGCTTGCAAAATTGAAAAAGTCCACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

134

Amino Acids

15.32

Weight (kDa)

10.23

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14e	PF01929	45 - 117	2.6e-26	Ribosomal protein L14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	10, 151, 325, 385
AluBI	AGCT	7 cut(s)	70, 230, 261, 302, 328, 373, 398
AluI	AGCT	7 cut(s)	70, 230, 261, 302, 328, 373, 398
ApeKI	GCWGC	2 cut(s)	230, 299
AspS9I	GGNCC	2 cut(s)	135, 193
AsuHPI	GGTGA	2 cut(s)	142, 157
AvaII	GGWCC	2 cut(s)	135, 193
BanII	GRGCYC	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	217, 311
BisI	GCNGC	3 cut(s)	219, 231, 300
BlsI	GCNGC	3 cut(s)	220, 232, 301
Bme18I	GGWCC	2 cut(s)	135, 193
BmgT120I	GGNCC	2 cut(s)	135, 193
BmiI	GGNNCC	3 cut(s)	137, 194, 195
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	6 cut(s)	145, 177, 245, 277, 288, 320
BsaBI	GATNNNNATC	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	182
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	217, 311
BslFI	GGGAC	2 cut(s)	121, 179
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	121, 179
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	137, 194, 195
BspQI	GCTCTTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	87
Bst6I	CTCTTC	2 cut(s)	284, 289
BstACI	GRCGYC	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	216, 371, 375
BstDEI	CTNAG	1 cut(s)	339
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	217, 311
Cac8I	GCNNGC	3 cut(s)	216, 371, 375
Cfr13I	GGNCC	2 cut(s)	135, 193
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	264, 331
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eam1104I	CTCTTC	2 cut(s)	284, 289
EarI	CTCTTC	2 cut(s)	284, 289
Eco24I	GRGCYC	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	135, 193
EcoO109I	RGGNCCY	2 cut(s)	135, 193
EcoRV	GATATC	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	2 cut(s)	267, 334
FaiI	YATR	3 cut(s)	128, 265, 332
FaqI	GGGAC	2 cut(s)	121, 179
FatI	CATG	2 cut(s)	263, 330
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	219, 231, 300
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	3 cut(s)	219, 231, 300
GluI	GCNGC	3 cut(s)	219, 231, 300
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	267, 334
HincII	GTYRAC	2 cut(s)	46, 85
HindII	GTYRAC	2 cut(s)	46, 85
HinfI	GANTC	1 cut(s)	321
HphI	GGTGA	2 cut(s)	142, 157
Hpy166II	GTNNAC	3 cut(s)	46, 85, 393
Hpy188I	TCNGA	2 cut(s)	29, 288
Hpy188III	TCNNGA	6 cut(s)	10, 22, 122, 151, 175, 187
Hpy8I	GTNNAC	3 cut(s)	46, 85, 393
Hpy99I	CGWCG	4 cut(s)	23, 77, 86, 89
HpyAV	CCTTC	2 cut(s)	24, 199
HpyCH4IV	ACGT	2 cut(s)	18, 87
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	2 cut(s)	18, 87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	267, 334
KflI	GGGWCCC	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	24
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	124, 366
LpnPI	CCDG	6 cut(s)	26, 88, 110, 135, 339, 344
Lsp1109I	GCAGC	2 cut(s)	217, 311
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	2 cut(s)	18, 87
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	5 cut(s)	214, 253, 256, 301, 306
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	2 cut(s)	209, 380
MnlI	CCTC	6 cut(s)	6, 49, 126, 147, 183, 342
MseI	TTAA	2 cut(s)	345, 400
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	2 cut(s)	267, 334
NlaIV	GGNNCC	3 cut(s)	137, 194, 195
PciSI	GCTCTTC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 78, 81
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	3 cut(s)	220, 232, 301
PpuMI	RGGWCCY	2 cut(s)	135, 193
Psp5II	RGGWCCY	2 cut(s)	135, 193
PspN4I	GGNNCC	3 cut(s)	137, 194, 195
PspPI	GGNCC	2 cut(s)	135, 193
PspPPI	RGGWCCY	2 cut(s)	135, 193
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SalI	GTCGAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	345, 400
SatI	GCNGC	3 cut(s)	219, 231, 300
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	2 cut(s)	135, 193
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	1 cut(s)	106
SgrDI	CGTCGACG	1 cut(s)	83
SinI	GGWCC	2 cut(s)	135, 193
Sse9I	AATT	2 cut(s)	209, 380
SsiI	CCGC	1 cut(s)	219
TaiI	ACGT	2 cut(s)	21, 90
TaqI	TCGA	3 cut(s)	21, 84, 114
TaqII	GACCGA	1 cut(s)	333
TasI	AATT	2 cut(s)	209, 380
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	2 cut(s)	345, 400
Tru9I	TTAA	2 cut(s)	345, 400
TseI	GCWGC	2 cut(s)	230, 299
TspDTI	ATGAA	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	66
VpaK11BI	GGWCC	2 cut(s)	135, 193
XmiI	GTMKAC	1 cut(s)	84
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.