Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Reverse (-)

32183081 .. 32184819

Gene Structure 1739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1194100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCGTTCAAGAGATACGTGGAGATTGGACGAGTTGCTCTCGTCAACTACGGCAAAGACTACGGCAAGCTCGTCGTTATCGTCGATGTCATCGACCAAAACAGGGCTCTGGTTGATGCACCTGACATGGTGAGGACCCAATTGAACTTCAAAAGGCTATCGCTCACCGATATCAAAATCGACATCAAAAGGGTTCCGAACAAGAAGACTCTGATTGCTGCAATGGAGGCTGCTGACGTAAAGAACAAATGGGAGAAGAGCTCGTGGGGCAGGAAGCTGATAGTGCAGAAGAGAAGAGCTGCACTCAACGATTTTGATAGGTTCAAGCTTATGTTGGCAAAGATCAAGAGGGCTGGAATCATCAGGCAGGAGCTAACGAAGCTCAAAAAGGAGAGTGCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

135

Amino Acids

15.48

Weight (kDa)

10.31

Isoelectric Point (pI)

23.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14e	PF01929	45 - 117	2.1e-26	Ribosomal protein L14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	10, 145, 151, 325
AluBI	AGCT	7 cut(s)	70, 261, 277, 299, 328, 373, 382
AluI	AGCT	7 cut(s)	70, 261, 277, 299, 328, 373, 382
Alw21I	GWGCWC	1 cut(s)	263
ApeKI	GCWGC	3 cut(s)	218, 230, 299
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	142, 157
AvaII	GGWCC	1 cut(s)	135
BanII	GRGCYC	2 cut(s)	109, 263
BauI	CACGAG	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	3 cut(s)	205, 217, 286
BceAI	ACGGC	2 cut(s)	67, 79
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BisI	GCNGC	3 cut(s)	219, 231, 300
BlsI	GCNGC	3 cut(s)	220, 232, 301
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	137, 195
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	212
BplI	GAGNNNNNCTC	6 cut(s)	24, 56, 245, 277, 288, 320
BsaAI	YACGTR	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	228
BseXI	GCAGC	3 cut(s)	205, 217, 286
BsgI	GTGCAG	2 cut(s)	285, 305
BsiHKAI	GWGCWC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	109, 263
Bsp143I	GATC	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	137, 195
BspQI	GCTCTTC	2 cut(s)	251, 289
BsrDI	GCAATG	1 cut(s)	228
BssMI	GATC	1 cut(s)	342
BssSI	CACGAG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	262
Bst6I	CTCTTC	3 cut(s)	251, 284, 289
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 267, 283, 379
BstV1I	GCAGC	3 cut(s)	205, 217, 286
BstV2I	GAAGAC	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	135
CviAII	CATG	1 cut(s)	127
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
Eam1104I	CTCTTC	3 cut(s)	251, 284, 289
EarI	CTCTTC	3 cut(s)	251, 284, 289
Ecl136II	GAGCTC	1 cut(s)	261
Eco24I	GRGCYC	2 cut(s)	109, 263
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	172
EcoT38I	GRGCYC	2 cut(s)	109, 263
FaeI	CATG	1 cut(s)	130
FaiI	YATR	2 cut(s)	128, 332
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	219, 231, 300
FriOI	GRGCYC	2 cut(s)	109, 263
Fsp4HI	GCNGC	3 cut(s)	219, 231, 300
GluI	GCNGC	3 cut(s)	219, 231, 300
Hin1II	CATG	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	2 cut(s)	208, 357
HphI	GGTGA	2 cut(s)	142, 157
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	3 cut(s)	198, 213, 404
Hpy188III	TCNNGA	2 cut(s)	10, 346
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	2 cut(s)	77, 86
HpyCH4IV	ACGT	2 cut(s)	18, 237
HpyCH4V	TGCA	5 cut(s)	119, 221, 286, 302, 398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 267, 283, 379
HpySE526I	ACGT	2 cut(s)	18, 237
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	342
LguI	GCTCTTC	2 cut(s)	251, 289
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	7 cut(s)	88, 95, 135, 256, 339, 349, 353
Lsp1109I	GCAGC	3 cut(s)	205, 217, 286
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	2 cut(s)	18, 237
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	4 cut(s)	217, 268, 301, 306
MfeI	CAATTG	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	109, 263
MluCI	AATT	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	3 cut(s)	126, 220, 342
MunI	CAATTG	1 cut(s)	140
MwoI	GCNNNNNNNGC	4 cut(s)	227, 267, 283, 379
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	2 cut(s)	137, 195
PciSI	GCTCTTC	2 cut(s)	251, 289
PcsI	WCGNNNNNNNCGW	4 cut(s)	69, 78, 81, 90
PfeI	GAWTC	1 cut(s)	357
PkrI	GCNGC	3 cut(s)	220, 232, 301
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	137, 195
PspPI	GGNCC	1 cut(s)	135
PspPPI	RGGWCCY	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	263
SapI	GCTCTTC	2 cut(s)	251, 289
SatI	GCNGC	3 cut(s)	219, 231, 300
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	1 cut(s)	202
SduI	GDGCHC	2 cut(s)	109, 263
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	135
Sse9I	AATT	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	263
TaiI	ACGT	2 cut(s)	21, 240
TaqI	TCGA	3 cut(s)	84, 93, 180
TasI	AATT	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	357
TseI	GCWGC	3 cut(s)	218, 230, 299
VpaK11BI	GGWCC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.