Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Reverse (-)

31656963 .. 31657367

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG279400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCTTTCAAGAGGTACGTGGAGACCGGACGGGTGGCTCTAGTCAAGTACGGGCCGGACTACGGTAGGCTTGTCGTAATGGTCGATGTTATCGACCAGAATCGGGCTTTGGTTGATGCACCTGATATGGTGAGGACCCAGATGAACTTCAAGAGGCTATCACTTGCTGATATCAAGATTGAGATCCCCAGGGTTCCAAAGAAGAAGACTCTAATTACTGCCATGGAGGCTGGTGATGTTAAGAACAACTGGGAACAGAGTTCATGGGGAAGGAAGCTGATAGTACAGAAGAGAAGAGCGTCGCTTAATGATTTCAATAGGTTCAAGCTCATGGTGGCCACGATCAAGAAAACTGGAATCGTTAGGCAGGAGCTAACGAAGCTGAAGAAATCAAGTGCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

134

Amino Acids

15.41

Weight (kDa)

10.41

Isoelectric Point (pI)

22.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14e	PF01929	45 - 116	2e-23	Ribosomal protein L14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	3 cut(s)	17, 50, 285
AfiI	CCNNNNNNNGG	2 cut(s)	62, 103
AgsI	TTSAA	4 cut(s)	10, 151, 316, 325
AjnI	CCWGG	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	4 cut(s)	277, 328, 373, 382
AluI	AGCT	4 cut(s)	277, 328, 373, 382
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	2 cut(s)	53, 336
AspS9I	GGNCC	2 cut(s)	53, 135
AsuHPI	GGTGA	2 cut(s)	142, 245
AvaII	GGWCC	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	53, 135
BmiI	GGNNCC	2 cut(s)	137, 195
BmrFI	CCNGG	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	188, 189, 222
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 103
Bse1I	ACTGG	2 cut(s)	254, 358
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	188, 189, 222
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	2 cut(s)	62, 103
BseNI	ACTGG	2 cut(s)	254, 358
BshFI	GGCC	2 cut(s)	55, 338
BsiSI	CCGG	2 cut(s)	27, 56
BslI	CCNNNNNNNGG	2 cut(s)	62, 103
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	2 cut(s)	55, 338
Bso31I	GGTCTC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	183, 342
Bsp19I	CCATGG	1 cut(s)	222
BspANI	GGCC	2 cut(s)	55, 338
BspLI	GGNNCC	2 cut(s)	137, 195
BspPI	GGATC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	254, 358
BssECI	CCNNGG	3 cut(s)	188, 189, 222
BssMI	GATC	2 cut(s)	183, 342
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	2 cut(s)	284, 289
BstBAI	YACGTR	1 cut(s)	19
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	186, 345
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	183, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 379
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	55, 338
BtgI	CCRYGG	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	53, 135
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	3 cut(s)	16, 49, 284
CviAII	CATG	3 cut(s)	223, 264, 331
CviQI	GTAC	3 cut(s)	16, 49, 284
DpnI	GATC	2 cut(s)	185, 344
DpnII	GATC	2 cut(s)	183, 342
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	284, 289
EarI	CTCTTC	2 cut(s)	284, 289
Eco130I	CCWWGG	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	226, 267, 334
FaiI	YATR	4 cut(s)	128, 224, 265, 332
FatI	CATG	3 cut(s)	222, 263, 330
FspBI	CTAG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	55, 338
HapII	CCGG	2 cut(s)	27, 56
HgaI	GACGC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	226, 267, 334
HinfI	GANTC	3 cut(s)	100, 208, 357
HpaII	CCGG	2 cut(s)	27, 56
HphI	GGTGA	2 cut(s)	142, 245
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	4 cut(s)	10, 151, 175, 346
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	119, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 379
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	226, 267, 334
Kzo9I	GATC	2 cut(s)	183, 342
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	370
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	18
MalI	GATC	2 cut(s)	185, 344
MboI	GATC	2 cut(s)	183, 342
MboII	GAAGA	5 cut(s)	214, 217, 301, 306, 397
MflI	RGATCY	1 cut(s)	183
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	1 cut(s)	213
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	6, 126, 147, 220
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	2 cut(s)	240, 306
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	2 cut(s)	27, 56
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	227, 379
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	183, 342
NlaIII	CATG	3 cut(s)	226, 267, 334
NlaIV	GGNNCC	2 cut(s)	137, 195
PasI	CCCWGGG	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 90
PfeI	GAWTC	2 cut(s)	100, 357
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	137, 195
PspPI	GGNCC	2 cut(s)	53, 135
PspPPI	RGGWCCY	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	3 cut(s)	17, 50, 285
RsaNI	GTAC	3 cut(s)	16, 49, 284
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	240, 306
Sau3AI	GATC	2 cut(s)	183, 342
Sau96I	GGNCC	2 cut(s)	53, 135
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	8 cut(s)	17, 21, 124, 279, 323, 330, 375, 384
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	135
Sse9I	AATT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	84, 93
TasI	AATT	1 cut(s)	213
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	100, 357
Tru1I	TTAA	2 cut(s)	240, 306
Tru9I	TTAA	2 cut(s)	240, 306
TspDTI	ATGAA	2 cut(s)	158, 252
VpaK11BI	GGWCC	1 cut(s)	135
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.