Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Forward (+)

8050900 .. 8052680

Gene Structure 1781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCTTTCAAGAGGTACGTTGAGATCGGAAGGGTGGCCCTCGTCAACTACGGCGAGGACTACGGCAAGCTCGTCGTCATCGTCGACGTCATCGACCAGAACAGAGCTCTTGTGGATGCGCCTGATATGGTGAGGTCCCAAATGAATTTCAAGAGACTTTCCCTCACTGACATCAAGATTGACATCAAGAGGGTCCCGAAGAAGAAGGAACTGCTTGCTGCAATGGAGGCTGCTGATGTGAAGAAGAAGTGGGAAAGCAGCTCTTGGGGTAGGAAACTGATTGTTCAGAAGAGAAGGGCATCTCTTAATGACTTTGATCGATTCAAGCTCATGTTGGCTAAGATTAAGAGGGCTGGGCTGGTGAAGAACGAGCTTTCTAAACTGAAGAAGGAGGTTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

134

Amino Acids

15.43

Weight (kDa)

10.1

Isoelectric Point (pI)

25.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14e	PF01929	45 - 117	3e-26	Ribosomal protein L14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	3 cut(s)	10, 151, 325
AluBI	AGCT	6 cut(s)	70, 107, 261, 328, 373, 401
AluI	AGCT	6 cut(s)	70, 107, 261, 328, 373, 401
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	148
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	4 cut(s)	218, 230, 258, 398
ApoI	RAATTY	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	3 cut(s)	37, 135, 193
AsuHPI	GGTGA	2 cut(s)	142, 373
AvaII	GGWCC	2 cut(s)	135, 193
BanII	GRGCYC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	205, 217, 270
BceAI	ACGGC	2 cut(s)	67, 79
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BcoDI	GTCTC	1 cut(s)	148
BisI	GCNGC	4 cut(s)	219, 231, 259, 399
BlsI	GCNGC	4 cut(s)	220, 232, 260, 400
Bme18I	GGWCC	2 cut(s)	135, 193
BmgT120I	GGNCC	3 cut(s)	37, 135, 193
BmiI	GGNNCC	3 cut(s)	137, 194, 195
BmsI	GCATC	2 cut(s)	106, 308
Bsa29I	ATCGAT	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	319
BseGI	GGATG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	228
BseXI	GCAGC	3 cut(s)	205, 217, 270
BseYI	CCCAGC	1 cut(s)	353
BshFI	GGCC	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	109
BslFI	GGGAC	2 cut(s)	121, 179
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	121, 179
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	24, 316
BspANI	GGCC	1 cut(s)	38
BspDI	ATCGAT	1 cut(s)	319
BspLI	GGNNCC	3 cut(s)	137, 194, 195
BsrDI	GCAATG	1 cut(s)	228
BssMI	GATC	2 cut(s)	24, 316
BssNI	GRCGYC	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	68, 216
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	27, 319
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	2 cut(s)	24, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	205, 217, 270
Bsu15I	ATCGAT	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	68, 216
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	37, 135, 193
ClaI	ATCGAT	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	2 cut(s)	26, 318
DpnII	GATC	2 cut(s)	24, 316
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	135, 193
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	107
EcoO109I	RGGNCCY	2 cut(s)	135, 193
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	1 cut(s)	334
FaiI	YATR	2 cut(s)	128, 332
FalI	AAGNNNNNCTT	2 cut(s)	247, 279
FaqI	GGGAC	2 cut(s)	121, 179
FatI	CATG	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	219, 231, 259, 399
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	4 cut(s)	219, 231, 259, 399
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	219, 231, 259, 399
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	2 cut(s)	46, 85
HindII	GTYRAC	2 cut(s)	46, 85
HinfI	GANTC	1 cut(s)	321
HphI	GGTGA	2 cut(s)	142, 373
Hpy166II	GTNNAC	2 cut(s)	46, 85
Hpy188I	TCNGA	2 cut(s)	29, 288
Hpy188III	TCNNGA	5 cut(s)	10, 151, 175, 187, 196
Hpy8I	GTNNAC	2 cut(s)	46, 85
Hpy99I	CGWCG	3 cut(s)	77, 86, 89
HpyAV	CCTTC	4 cut(s)	24, 199, 288, 382
HpyCH4IV	ACGT	2 cut(s)	18, 87
HpyCH4V	TGCA	2 cut(s)	221, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	2 cut(s)	18, 87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	1 cut(s)	119
KflI	GGGWCCC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	24, 316
LpnPI	CCDG	4 cut(s)	110, 135, 339, 344
Lsp1109I	GCAGC	3 cut(s)	205, 217, 270
LweI	GCATC	2 cut(s)	106, 308
MaeII	ACGT	2 cut(s)	18, 87
MalI	GATC	2 cut(s)	26, 318
MboI	GATC	2 cut(s)	24, 316
MboII	GAAGA	7 cut(s)	211, 214, 253, 256, 301, 376, 397
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	9 cut(s)	6, 49, 50, 126, 173, 183, 220, 342, 385
MseI	TTAA	3 cut(s)	306, 345, 403
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	2 cut(s)	24, 316
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	3 cut(s)	137, 194, 195
PcsI	WCGNNNNNNNCGW	4 cut(s)	69, 78, 81, 90
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	4 cut(s)	220, 232, 260, 400
PpuMI	RGGWCCY	2 cut(s)	135, 193
Psp124BI	GAGCTC	1 cut(s)	109
Psp5II	RGGWCCY	2 cut(s)	135, 193
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	3 cut(s)	137, 194, 195
PspPI	GGNCC	3 cut(s)	37, 135, 193
PspPPI	RGGWCCY	2 cut(s)	135, 193
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	306, 345, 403
SatI	GCNGC	4 cut(s)	219, 231, 259, 399
Sau3AI	GATC	2 cut(s)	24, 316
Sau96I	GGNCC	3 cut(s)	37, 135, 193
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	2 cut(s)	106, 308
SgrDI	CGTCGACG	1 cut(s)	83
SinI	GGWCC	2 cut(s)	135, 193
Sse9I	AATT	1 cut(s)	145
SstI	GAGCTC	1 cut(s)	109
TaiI	ACGT	2 cut(s)	21, 90
TaqI	TCGA	3 cut(s)	84, 93, 319
TasI	AATT	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	3 cut(s)	306, 345, 403
Tru9I	TTAA	3 cut(s)	306, 345, 403
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	4 cut(s)	218, 230, 258, 398
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	135, 193
XapI	RAATTY	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	84
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.