Prupe.1G041500_v2.0.a1

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001563
Physical Location & Seq
Reverse (-)
2967909 .. 2970182
2274 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G041500.1

Sequence Viewer

Length: 405 bp
ATGCCTTTCAAGAGGTACGTTGAGATCGGAAGGGTGGCTCTCGTCAACTACGGCGAGGACTATGGGAAGCTTGTTGTCATCGTCGACGTCCTTGACCAGAACAGGGCTCTTGTCGATTCTCCTGATATGGTCAGATCCCAAATGAATTTCAAGAGACTTTCACTCACTGACATCAAAATTGATATCAAGAGGGTTCCTAAGAAGAAGGAATTGCTTGCTGCAATGGAAGCTGCTGATGTGAAGAAGAAGTGGGAGAACAGCTCTTGGGGTAGGAAACTTATTGTTCAGAAGAGGAGAGCATCTCTTAACGACTTTGATCGATTCAAGCTCATGTTGGCTAAGATTAAGAGGGCTGGCTTGGTCAAGAGTGAGCTTGCAAAACTGAAAAAGGAGACATCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14e

Protein Analysis

135

Amino Acids

15.47

Weight (kDa)

10.1

Isoelectric Point (pI)

29.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 84
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 3 cut(s) 10, 151, 325
AluBI AGCT 5 cut(s) 70, 230, 261, 328, 373
AluI AGCT 5 cut(s) 70, 230, 261, 328, 373
Alw26I GTCTC 2 cut(s) 148, 386
AlwI GGATC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 218, 230
ApoI RAATTY 1 cut(s) 145
BanII GRGCYC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 205, 217
BceAI ACGGC 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 148, 386
BisI GCNGC 2 cut(s) 219, 231
BlsI GCNGC 2 cut(s) 220, 232
BmiI GGNNCC 1 cut(s) 195
BmsI GCATC 1 cut(s) 308
BplI GAGNNNNNCTC 4 cut(s) 245, 277, 286, 318
Bsa29I ATCGAT 1 cut(s) 319
BsaHI GRCGYC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 2 cut(s) 205, 217
BshVI ATCGAT 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 2 cut(s) 148, 386
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 3 cut(s) 24, 134, 316
BspDI ATCGAT 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 228
BssMI GATC 3 cut(s) 24, 134, 316
BssNI GRCGYC 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 216, 355, 375
BstDEI CTNAG 2 cut(s) 198, 339
BstKTI GATC 3 cut(s) 27, 137, 319
BstMAI GTCTC 2 cut(s) 148, 386
BstMBI GATC 3 cut(s) 24, 134, 316
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 205, 217
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
Bsu15I ATCGAT 1 cut(s) 319
BsuTUI ATCGAT 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 3 cut(s) 216, 355, 375
ClaI ATCGAT 1 cut(s) 319
Csp6I GTAC 1 cut(s) 16
CviAII CATG 1 cut(s) 331
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 2 cut(s) 198, 339
DpnI GATC 3 cut(s) 26, 136, 318
DpnII GATC 3 cut(s) 24, 134, 316
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 109
Eco32I GATATC 1 cut(s) 184
EcoRV GATATC 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 109
FaeI CATG 1 cut(s) 334
FaiI YATR 3 cut(s) 63, 128, 332
FatI CATG 1 cut(s) 330
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 219, 231
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 2 cut(s) 219, 231
GluI GCNGC 2 cut(s) 219, 231
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 334
HincII GTYRAC 2 cut(s) 46, 85
HindII GTYRAC 2 cut(s) 46, 85
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 116, 321
Hpy166II GTNNAC 2 cut(s) 46, 85
Hpy188I TCNGA 3 cut(s) 29, 134, 288
Hpy188III TCNNGA 5 cut(s) 10, 122, 151, 187, 364
Hpy8I GTNNAC 2 cut(s) 46, 85
Hpy99I CGWCG 2 cut(s) 86, 89
HpyAV CCTTC 2 cut(s) 24, 199
HpyCH4IV ACGT 2 cut(s) 18, 87
HpyCH4V TGCA 2 cut(s) 221, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 198, 339
HpySE526I ACGT 2 cut(s) 18, 87
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 334
Kzo9I GATC 3 cut(s) 24, 134, 316
LpnPI CCDG 4 cut(s) 88, 110, 135, 339
Lsp1109I GCAGC 2 cut(s) 205, 217
LweI GCATC 1 cut(s) 308
MaeII ACGT 2 cut(s) 18, 87
MalI GATC 3 cut(s) 26, 136, 318
MboI GATC 3 cut(s) 24, 134, 316
MboII GAAGA 4 cut(s) 214, 253, 256, 301
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 3 cut(s) 145, 177, 209
MnlI CCTC 5 cut(s) 6, 49, 183, 285, 342
MseI TTAA 3 cut(s) 306, 345, 403
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 3 cut(s) 24, 134, 316
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 116, 321
PkrI GCNGC 2 cut(s) 220, 232
PspN4I GGNNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 3 cut(s) 306, 345, 403
SatI GCNGC 2 cut(s) 219, 231
Sau3AI GATC 3 cut(s) 24, 134, 316
SduI GDGCHC 1 cut(s) 109
SetI ASST 8 cut(s) 17, 21, 72, 90, 232, 263, 330, 375
SfaNI GCATC 1 cut(s) 308
SgrDI CGTCGACG 1 cut(s) 83
Sse9I AATT 3 cut(s) 145, 177, 209
TaiI ACGT 2 cut(s) 21, 90
TaqI TCGA 3 cut(s) 84, 114, 319
TasI AATT 3 cut(s) 145, 177, 209
TfiI GAWTC 2 cut(s) 116, 321
Tru1I TTAA 3 cut(s) 306, 345, 403
Tru9I TTAA 3 cut(s) 306, 345, 403
TscAI CASTG 1 cut(s) 172
TseI GCWGC 2 cut(s) 218, 230
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 172
XapI RAATTY 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 84
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.