Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Reverse (-)

8647132 .. 8648939

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG047400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCTTTCAAGAGGTACGTGGAGATCGGAAGGGTGGCTCTCGTCAACTACGGCGAGGACTACGGCAAGCTCGTCGTCATCGTCGACGTCATCGACCAGAACAGAGCTCTTGTTGATGCCCCTGATATGGTGAGATCTCAAATGAATTTCAAGAGGCTTTCTCTCACTGACATCAAAATTGACATCAAGAGGGTCCCCAAGAAGAAGGAATTGCTTGCCGCAATGGAGGCTGCTGATGTTAAGAAGAAGTGGGAAAGTAGCTCTTGGGGTAGGAAGCTTATTGTTCAGAAGCGAAGGGCCAATCTTAACGACTTTGATCGCTTCAAGCTTATGTTGGCCAAGATCAAGGTTAGTTTGTTTGTGTTTTTTAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

125

Amino Acids

14.66

Weight (kDa)

10.03

Isoelectric Point (pI)

24.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14e	PF01929	45 - 116	3.7e-26	Ribosomal protein L14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	10, 151, 325
AluBI	AGCT	5 cut(s)	70, 107, 261, 277, 328
AluI	AGCT	5 cut(s)	70, 107, 261, 277, 328
Alw21I	GWGCWC	1 cut(s)	109
AoxI	GGCC	2 cut(s)	297, 336
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	193, 297
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	217
BceAI	ACGGC	2 cut(s)	67, 79
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	2 cut(s)	219, 231
BlsI	GCNGC	2 cut(s)	220, 232
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	193, 297
BmiI	GGNNCC	2 cut(s)	194, 195
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BsaAI	YACGTR	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	2 cut(s)	299, 338
BsiHKAI	GWGCWC	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	299, 338
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	4 cut(s)	24, 134, 316, 342
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	2 cut(s)	299, 338
BspLI	GGNNCC	2 cut(s)	194, 195
BsrDI	GCAATG	1 cut(s)	228
BssMI	GATC	4 cut(s)	24, 134, 316, 342
BssNI	GRCGYC	1 cut(s)	87
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	68, 216
BstKTI	GATC	4 cut(s)	27, 137, 319, 345
BstMBI	GATC	4 cut(s)	24, 134, 316, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	299, 338
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	68, 216
Cfr13I	GGNCC	2 cut(s)	193, 297
Csp6I	GTAC	1 cut(s)	16
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	4 cut(s)	26, 136, 318, 344
DpnII	GATC	4 cut(s)	24, 134, 316, 342
EaeI	YGGCCR	1 cut(s)	336
Ecl136II	GAGCTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	109
FaiI	YATR	2 cut(s)	128, 332
FalI	AAGNNNNNCTT	2 cut(s)	247, 279
FaqI	GGGAC	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	219, 231
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	219, 231
GluI	GCNGC	2 cut(s)	219, 231
HaeIII	GGCC	2 cut(s)	299, 338
Hin1I	GRCGYC	1 cut(s)	87
HincII	GTYRAC	2 cut(s)	46, 85
HindII	GTYRAC	2 cut(s)	46, 85
HindIII	AAGCTT	2 cut(s)	275, 326
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	46, 85
Hpy188I	TCNGA	2 cut(s)	29, 288
Hpy188III	TCNNGA	3 cut(s)	10, 151, 187
Hpy8I	GTNNAC	2 cut(s)	46, 85
Hpy99I	CGWCG	3 cut(s)	77, 86, 89
HpyAV	CCTTC	3 cut(s)	24, 199, 288
HpyCH4IV	ACGT	2 cut(s)	18, 87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpySE526I	ACGT	2 cut(s)	18, 87
Hsp92I	GRCGYC	1 cut(s)	87
KflI	GGGWCCC	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	24, 134, 316, 342
LpnPI	CCDG	2 cut(s)	110, 135
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	2 cut(s)	18, 87
MalI	GATC	4 cut(s)	26, 136, 318, 344
MboI	GATC	4 cut(s)	24, 134, 316, 342
MboII	GAAGA	2 cut(s)	214, 256
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	3 cut(s)	145, 177, 209
MluNI	TGGCCA	1 cut(s)	338
MnlI	CCTC	5 cut(s)	6, 49, 147, 183, 220
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	3 cut(s)	240, 306, 369
Msp20I	TGGCCA	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	4 cut(s)	24, 134, 316, 342
NlaIV	GGNNCC	2 cut(s)	194, 195
PcsI	WCGNNNNNNNCGW	4 cut(s)	69, 78, 81, 90
PkrI	GCNGC	2 cut(s)	220, 232
Ppu21I	YACGTR	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	194, 195
PspPI	GGNCC	2 cut(s)	193, 297
PspPPI	RGGWCCY	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	240, 306, 369
SatI	GCNGC	2 cut(s)	219, 231
Sau3AI	GATC	4 cut(s)	24, 134, 316, 342
Sau96I	GGNCC	2 cut(s)	193, 297
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	9 cut(s)	17, 21, 72, 90, 109, 263, 279, 330, 351
SfaNI	GCATC	1 cut(s)	106
SgrDI	CGTCGACG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	193
Sse9I	AATT	3 cut(s)	145, 177, 209
SsiI	CCGC	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	109
TaiI	ACGT	2 cut(s)	21, 90
TaqI	TCGA	2 cut(s)	84, 93
TasI	AATT	3 cut(s)	145, 177, 209
TauI	GCSGC	1 cut(s)	221
Tru1I	TTAA	3 cut(s)	240, 306, 369
Tru9I	TTAA	3 cut(s)	240, 306, 369
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	84
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.