Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Forward (+)

49966286 .. 49967474

Gene Structure 1189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG298000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCGTTCAAGAGGTACGTGGAGATTGGACGGGTGGCTCTGGTCAACTACGGGCCGGACTACGGTAGGCTCGTCGTGATTGTCGATGTCATCGACCAGAATCGGGCTCTGGTTGATGCACCTGATATGGTGAGGACTCAGATGAACTTCAAGAGGCTATCGCTTACTGATATCAAGATTGAGATCCCCAGGGTTCCGAAGAAGAAGACTCTGATTGCTGCCATGGAGGCTGGTGATGTTAAGAACAAATGGGAACAGAGTTCATGGGGAAGGAAGCTGATAGTGCAGAAGAGAAGAGCGTCACTTAATGATTTCGATAGGTTCAAGCTCATGTTAGCCAAGATCAAGAAAGCTGGAATCGTCAGGCAGGAGCTAACAAAGCTGAAGAAATCAAGTGCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

134

Amino Acids

15.41

Weight (kDa)

10.34

Isoelectric Point (pI)

27.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14e	PF01929	45 - 117	4.2e-27	Ribosomal protein L14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	62, 103
AgsI	TTSAA	3 cut(s)	10, 151, 325
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	5 cut(s)	277, 328, 353, 373, 382
AluI	AGCT	5 cut(s)	277, 328, 353, 373, 382
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	142, 245
BanII	GRGCYC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	190
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	188, 189, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 103
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	188, 189, 222
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	2 cut(s)	62, 103
BseMII	CTCAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	62, 103
BsnI	GGCC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	183, 342
Bsp19I	CCATGG	1 cut(s)	222
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	289
BssECI	CCNNGG	3 cut(s)	188, 189, 222
BssMI	GATC	2 cut(s)	183, 342
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	2 cut(s)	284, 289
BstBAI	YACGTR	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	186, 345
BstMBI	GATC	2 cut(s)	183, 342
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 283, 379
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	3 cut(s)	223, 264, 331
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	185, 344
DpnII	GATC	2 cut(s)	183, 342
Eam1104I	CTCTTC	2 cut(s)	284, 289
EarI	CTCTTC	2 cut(s)	284, 289
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	226, 267, 334
FaiI	YATR	4 cut(s)	128, 224, 265, 332
FatI	CATG	3 cut(s)	222, 263, 330
Fnu4HI	GCNGC	1 cut(s)	219
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	226, 267, 334
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	4 cut(s)	100, 136, 208, 357
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	2 cut(s)	142, 245
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	4 cut(s)	141, 198, 213, 404
Hpy188III	TCNNGA	5 cut(s)	10, 76, 151, 175, 346
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	119, 286, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 283, 379
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	226, 267, 334
Kzo9I	GATC	2 cut(s)	183, 342
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	300
MalI	GATC	2 cut(s)	185, 344
MboI	GATC	2 cut(s)	183, 342
MboII	GAAGA	6 cut(s)	211, 214, 217, 301, 306, 397
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	109
MlyI	GAGTC	2 cut(s)	130, 202
MnlI	CCTC	4 cut(s)	6, 126, 147, 220
MseI	TTAA	2 cut(s)	240, 306
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	3 cut(s)	227, 283, 379
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	183, 342
NlaIII	CATG	3 cut(s)	226, 267, 334
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	300
PasI	CCCWGGG	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 81, 90
PfeI	GAWTC	2 cut(s)	100, 357
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	2 cut(s)	130, 202
PpsI	GAGTC	2 cut(s)	130, 202
Ppu21I	YACGTR	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	240, 306
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	2 cut(s)	183, 342
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	130, 202
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	9 cut(s)	17, 21, 124, 279, 323, 330, 355, 375, 384
SfaNI	GCATC	1 cut(s)	106
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	84, 93, 315
TfiI	GAWTC	2 cut(s)	100, 357
Tru1I	TTAA	2 cut(s)	240, 306
Tru9I	TTAA	2 cut(s)	240, 306
TseFI	GTSAC	1 cut(s)	300
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	300
TspDTI	ATGAA	2 cut(s)	158, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.