FvH4_4g03940

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001563
Physical Location & Seq
Reverse (-)
3424124 .. 3425814
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03940.t1

Sequence Viewer

Length: 402 bp
ATGCCTTTCAAGAGGTACGTCGAGATCGGAAGGGTGGCTCTCGTCAACTACGGCGAGGACTACGGCAAGCTCGTCGTCATCGTCGACGTCATCGACCAGAACAGAGCCCTTGTTGATGCCCCTGATATGGTGAGATCTCAGATGAATTTCAAGAGGCTTTCTCTCACTGACATCAAAATTGACATCAAGAGGGTCCCCAAGAAGAAGGAATTGCTGGCTGCAATGGAGGCTGCTGATGTGAAGAAGAAGTGGGAAAGTAGCTCTTGGGGCAGGAAGCTTATTGTTCAGAAGCGAAGGGCTAATCTTAATGACTTTGATCGCTTCAAGCTTATGTTGGCTAAGATCAAGAGGGCTGGCTTGGTCAAGAGCGAGCTTGCAAAACTGAAGAAGCAGAGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14e

Protein Analysis

134

Amino Acids

15.33

Weight (kDa)

10.18

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14e PF01929 45 - 117 2.1e-26 Ribosomal protein L14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 3 cut(s) 10, 151, 325
AluBI AGCT 5 cut(s) 70, 261, 277, 328, 373
AluI AGCT 5 cut(s) 70, 261, 277, 328, 373
ApeKI GCWGC 2 cut(s) 218, 230
ApoI RAATTY 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 205, 217
BceAI ACGGC 2 cut(s) 67, 79
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BglII AGATCT 1 cut(s) 134
BisI GCNGC 2 cut(s) 219, 231
BlsI GCNGC 2 cut(s) 220, 232
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 2 cut(s) 194, 195
BmsI GCATC 1 cut(s) 106
BplI GAGNNNNNCTC 2 cut(s) 145, 177
BsaHI GRCGYC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 205, 217
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 4 cut(s) 24, 134, 316, 342
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 194, 195
BsrDI GCAATG 1 cut(s) 228
BssMI GATC 4 cut(s) 24, 134, 316, 342
BssNI GRCGYC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 5 cut(s) 68, 216, 355, 371, 375
BstDEI CTNAG 3 cut(s) 138, 339, 399
BstKTI GATC 4 cut(s) 27, 137, 319, 345
BstMBI GATC 4 cut(s) 24, 134, 316, 342
BstMWI GCNNNNNNNGC 2 cut(s) 227, 267
BstV1I GCAGC 2 cut(s) 205, 217
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 5 cut(s) 68, 216, 355, 371, 375
Cfr13I GGNCC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 16
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 3 cut(s) 138, 339, 399
DpnI GATC 4 cut(s) 26, 136, 318, 344
DpnII GATC 4 cut(s) 24, 134, 316, 342
Eco24I GRGCYC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 109
FaiI YATR 2 cut(s) 128, 332
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FaqI GGGAC 1 cut(s) 179
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 219, 231
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 2 cut(s) 219, 231
GluI GCNGC 2 cut(s) 219, 231
Hin1I GRCGYC 1 cut(s) 87
HincII GTYRAC 2 cut(s) 46, 85
HindII GTYRAC 2 cut(s) 46, 85
HindIII AAGCTT 2 cut(s) 275, 326
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 46, 85
Hpy188I TCNGA 3 cut(s) 29, 141, 288
Hpy188III TCNNGA 6 cut(s) 10, 22, 151, 187, 346, 364
Hpy8I GTNNAC 2 cut(s) 46, 85
Hpy99I CGWCG 4 cut(s) 23, 77, 86, 89
HpyAV CCTTC 3 cut(s) 24, 199, 288
HpyCH4IV ACGT 2 cut(s) 18, 87
HpyCH4V TGCA 2 cut(s) 221, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 267
HpyF3I CTNAG 3 cut(s) 138, 339, 399
HpySE526I ACGT 2 cut(s) 18, 87
Hsp92I GRCGYC 1 cut(s) 87
KflI GGGWCCC 1 cut(s) 193
Kzo9I GATC 4 cut(s) 24, 134, 316, 342
LpnPI CCDG 5 cut(s) 110, 135, 200, 256, 339
Lsp1109I GCAGC 2 cut(s) 205, 217
LweI GCATC 1 cut(s) 106
MaeII ACGT 2 cut(s) 18, 87
MalI GATC 4 cut(s) 26, 136, 318, 344
MboI GATC 4 cut(s) 24, 134, 316, 342
MboII GAAGA 4 cut(s) 214, 253, 256, 397
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 3 cut(s) 145, 177, 209
MnlI CCTC 6 cut(s) 6, 49, 147, 183, 220, 342
MseI TTAA 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 227, 267
NdeII GATC 4 cut(s) 24, 134, 316, 342
NlaIV GGNNCC 2 cut(s) 194, 195
PcsI WCGNNNNNNNCGW 4 cut(s) 69, 78, 81, 90
PkrI GCNGC 2 cut(s) 220, 232
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 194, 195
PspPI GGNCC 1 cut(s) 193
PspPPI RGGWCCY 1 cut(s) 193
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 2 cut(s) 219, 231
Sau3AI GATC 4 cut(s) 24, 134, 316, 342
Sau96I GGNCC 1 cut(s) 193
SduI GDGCHC 1 cut(s) 109
SetI ASST 8 cut(s) 17, 21, 72, 90, 263, 279, 330, 375
SfaNI GCATC 1 cut(s) 106
SgrDI CGTCGACG 1 cut(s) 83
SinI GGWCC 1 cut(s) 193
Sse9I AATT 3 cut(s) 145, 177, 209
TaiI ACGT 2 cut(s) 21, 90
TaqI TCGA 3 cut(s) 21, 84, 93
TasI AATT 3 cut(s) 145, 177, 209
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 172
TseI GCWGC 2 cut(s) 218, 230
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 84
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.