Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Reverse (-)

20039320 .. 20041241

Gene Structure 1922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G220700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCCGTTCAAGAGATACGTTGAGATCGGACGAGTGGCTCTCGTCAACTACGGGAAAGACTACGGCAGGCTCGTCGTGATCGTCGATGTCCTCGACCAAAACAGGGCTCTTGTTGATGCCCCTGACATGGTGAGGACCCAATTGAATTTCAAGAGGCTTACACTCACTGATATTACCATTGACATCAAAAGGGTTCCTAAGAAGAAGACTCTGCTTGCTGCCATGGAGGCTGCTGACGTAAAGAACAAATGGGAAAACAGCTCGTGGGGCAGGAAGCTGATAGTGCAGAAGAGAAGAGCTGCACTAAATGATTTTGATAGGTTTAAGCTCATGTTGGCAAAGATCAAGGGCGGGAATCATCAGGCAGGAGCTAACGAAACTCAAAAAGGAGAGTGCAGCCTGAGTCTTGAATCTGTACTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

142

Amino Acids

16.03

Weight (kDa)

9.91

Isoelectric Point (pI)

20.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	145
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	2 cut(s)	103, 127
AgsI	TTSAA	4 cut(s)	10, 145, 151, 410
AluBI	AGCT	5 cut(s)	261, 277, 299, 328, 371
AluI	AGCT	5 cut(s)	261, 277, 299, 328, 371
ApeKI	GCWGC	4 cut(s)	218, 230, 299, 396
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	109
BauI	CACGAG	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	4 cut(s)	205, 217, 286, 408
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	4 cut(s)	219, 231, 300, 397
BlsI	GCNGC	4 cut(s)	220, 232, 301, 398
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	137, 195
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 127
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	103, 127
BseMII	CTCAG	1 cut(s)	392
BseXI	GCAGC	4 cut(s)	205, 217, 286, 408
BsgI	GTGCAG	3 cut(s)	285, 305, 415
BslI	CCNNNNNNNGG	2 cut(s)	103, 127
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	24, 78, 342
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	137, 195
BspQI	GCTCTTC	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	24, 78, 342
BssSI	CACGAG	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	284, 289
BstC8I	GCNNGC	2 cut(s)	68, 216
BstDEI	CTNAG	2 cut(s)	198, 401
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	3 cut(s)	27, 81, 345
BstMBI	GATC	3 cut(s)	24, 78, 342
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 267, 283
BstV1I	GCAGC	4 cut(s)	205, 217, 286, 408
BstV2I	GAAGAC	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	68, 216
Cfr13I	GGNCC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	3 cut(s)	127, 223, 331
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	2 cut(s)	198, 401
DpnI	GATC	3 cut(s)	26, 80, 344
DpnII	GATC	3 cut(s)	24, 78, 342
Eam1104I	CTCTTC	2 cut(s)	284, 289
EarI	CTCTTC	2 cut(s)	284, 289
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	130, 226, 334
FaiI	YATR	3 cut(s)	128, 224, 332
FatI	CATG	3 cut(s)	126, 222, 330
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	4 cut(s)	219, 231, 300, 397
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	4 cut(s)	219, 231, 300, 397
GluI	GCNGC	4 cut(s)	219, 231, 300, 397
Hin1II	CATG	3 cut(s)	130, 226, 334
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	4 cut(s)	208, 355, 403, 410
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	4 cut(s)	10, 76, 151, 407
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	2 cut(s)	77, 86
HpyCH4IV	ACGT	2 cut(s)	18, 237
HpyCH4V	TGCA	3 cut(s)	286, 302, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 267, 283
HpyF3I	CTNAG	2 cut(s)	198, 401
HpySE526I	ACGT	2 cut(s)	18, 237
Hsp92II	CATG	3 cut(s)	130, 226, 334
Kzo9I	GATC	3 cut(s)	24, 78, 342
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	7 cut(s)	52, 88, 135, 256, 347, 351, 413
Lsp1109I	GCAGC	4 cut(s)	205, 217, 286, 408
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	2 cut(s)	18, 237
MalI	GATC	3 cut(s)	26, 80, 344
MboI	GATC	3 cut(s)	24, 78, 342
MboII	GAAGA	4 cut(s)	214, 217, 301, 306
MfeI	CAATTG	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	2 cut(s)	140, 145
MlyI	GAGTC	2 cut(s)	202, 412
MnlI	CCTC	4 cut(s)	101, 126, 147, 220
MseI	TTAA	1 cut(s)	324
MunI	CAATTG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	227, 267, 283
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	3 cut(s)	24, 78, 342
NlaIII	CATG	3 cut(s)	130, 226, 334
NlaIV	GGNNCC	2 cut(s)	137, 195
PciSI	GCTCTTC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	4 cut(s)	69, 78, 81, 90
PfeI	GAWTC	2 cut(s)	355, 410
PkrI	GCNGC	4 cut(s)	220, 232, 301, 398
PleI	GAGTC	2 cut(s)	202, 411
PpsI	GAGTC	2 cut(s)	202, 411
PpuMI	RGGWCCY	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	137, 195
PspPI	GGNCC	1 cut(s)	135
PspPPI	RGGWCCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	4 cut(s)	219, 231, 300, 397
Sau3AI	GATC	3 cut(s)	24, 78, 342
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	2 cut(s)	202, 412
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	8 cut(s)	21, 240, 263, 279, 301, 323, 330, 373
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	135
Sse9I	AATT	2 cut(s)	140, 145
SsiI	CCGC	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	2 cut(s)	21, 240
TaqI	TCGA	2 cut(s)	84, 93
TasI	AATT	2 cut(s)	140, 145
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	2 cut(s)	355, 410
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	4 cut(s)	218, 230, 299, 396
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.