Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001563

Physical Location & Seq

Genomic Coordinates Forward (+)

8813832 .. 8815379

Gene Structure 1548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTTTTAAGAGATTCGTGGAGATTGGGAGAGTGGCGCTCGTTAACTACGGCGAGGATTATGGAAAGCTCGTGGTTATCGTCGATGTAGTCGACCAAAACAGGGCACTTGTGGATGCCCCTGACATGGAGAGAATCCAGATGAATTTGAAGAGGTTGTCTCTTACTGACATCGTCATTGATATCAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

134

Amino Acids

15.51

Weight (kDa)

10.12

Isoelectric Point (pI)

23.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14e	PF01929	45 - 117	2.3e-27	Ribosomal protein L14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20450 AT4G27090
fragaria_vesca	FvH4_2g21110 FvH4_4g03940 FvH4_4g04140
malus_domestica	MD05G1194100.v1.1 MD10G1180800.v1.1 MD13G1215500.v1.1 MD13G1218000.v1.1 MD16G1221000.v1.1 MD16G1223200.v1.1
prunus_persica	Prupe.1G041500_v2.0.a1 Prupe.1G041500_v2.0.a1 Prupe.1G044700_v2.0.a1 Prupe.8G220700_v2.0.a1
pyrus_communis	pycom05g18140 pycom10g15660 pycom16g18700
rosa_chinensis	RchiOBHm_Chr2g0117921 RchiOBHm_Chr4g0394171 RchiOBHm_Chr4g0394561 RchiOBHm_Chr6g0287611
rosa_laevigata	RLG00000009690 RLG00000009717 RLG00000012480
rosa_multiflora	Rmu_sc0004553.1_g000005 Rmu_sc0004974.1_g000004 Rmu_sc0005424.1_g000019 Rmu_sc0007029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00339160 Rroxscaffold_5G00339600 Rroxscaffold_7G00180990 Rroxscaffold_7G00181350
rosa_rugosa	Rorug03G0364500.1 Rorug03G0369400.1 Rorug06G0190100
rosa_samantha	Rh2DG279400 Rh2DG297200 Rh4AG052900 Rh4BG047400 Rh4BG050800 Rh6AG300600 Rh6BG306100 Rh6DG298000
rosa_wichuraiana	Rw0G014610 Rw2G019010 Rw2G021470 Rw4G004010 Rw4G004260 Rw6G025930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	103, 127
AgsI	TTSAA	2 cut(s)	151, 325
AluBI	AGCT	4 cut(s)	70, 299, 373, 382
AluI	AGCT	4 cut(s)	70, 299, 373, 382
Alw26I	GTCTC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	299, 398
ApoI	RAATTY	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	338
BauI	CACGAG	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	286, 385
BceAI	ACGGC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	2 cut(s)	300, 399
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	2 cut(s)	301, 400
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	6 cut(s)	24, 56, 145, 177, 288, 320
Bpu1102I	GCTNAGC	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 127
Bse3DI	GCAATG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	103, 127
BseMI	GCAATG	1 cut(s)	228
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	286, 385
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	103, 127
BsmAI	GTCTC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	327, 393
Bsp1720I	GCTNAGC	1 cut(s)	378
BspANI	GGCC	1 cut(s)	338
BspQI	GCTCTTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	228
BssMI	GATC	2 cut(s)	327, 393
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst6I	CTCTTC	4 cut(s)	146, 251, 284, 289
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	330, 396
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	2 cut(s)	327, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	286, 385
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	375
CfoI	GCGC	1 cut(s)	40
CviAII	CATG	3 cut(s)	127, 264, 331
CviJI	RGCY	7 cut(s)	70, 233, 299, 338, 353, 373, 382
CviKI_1	RGCY	7 cut(s)	70, 233, 299, 338, 353, 373, 382
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	2 cut(s)	329, 395
DpnII	GATC	2 cut(s)	327, 393
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	4 cut(s)	146, 251, 284, 289
EarI	CTCTTC	4 cut(s)	146, 251, 284, 289
Eco32I	GATATC	1 cut(s)	184
EcoRV	GATATC	1 cut(s)	184
FaeI	CATG	3 cut(s)	130, 267, 334
FaiI	YATR	4 cut(s)	63, 128, 265, 332
FatI	CATG	3 cut(s)	126, 263, 330
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	300, 399
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	300, 399
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	300, 399
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	130, 267, 334
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	2 cut(s)	46, 94
HindII	GTYRAC	2 cut(s)	46, 94
HinfI	GANTC	2 cut(s)	15, 135
HpaI	GTTAAC	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	46, 94
Hpy188III	TCNNGA	3 cut(s)	139, 325, 346
Hpy8I	GTNNAC	2 cut(s)	46, 94
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	199, 223
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	130, 267, 334
HspAI	GCGC	1 cut(s)	38
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	327, 393
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	6 cut(s)	88, 135, 152, 304, 339, 353
Lsp1109I	GCAGC	2 cut(s)	286, 385
LweI	GCATC	1 cut(s)	106
MalI	GATC	2 cut(s)	329, 395
MboI	GATC	2 cut(s)	327, 393
MboII	GAAGA	6 cut(s)	163, 214, 253, 268, 301, 306
MhlI	GDGCHC	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	1 cut(s)	145
MluNI	TGGCCA	1 cut(s)	338
MnlI	CCTC	6 cut(s)	49, 147, 211, 314, 342, 357
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	2 cut(s)	9, 45
Msp20I	TGGCCA	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	379
NdeII	GATC	2 cut(s)	327, 393
NlaIII	CATG	3 cut(s)	130, 267, 334
PciSI	GCTCTTC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 90
PfeI	GAWTC	2 cut(s)	15, 135
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	301, 400
PsyI	GACNNNGTC	1 cut(s)	173
SalI	GTCGAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	9, 45
SatI	GCNGC	2 cut(s)	300, 399
Sau3AI	GATC	2 cut(s)	327, 393
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	7 cut(s)	72, 158, 210, 301, 323, 375, 384
SfaNI	GCATC	1 cut(s)	106
Sse9I	AATT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	84, 93
TasI	AATT	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	15, 135
Tru1I	TTAA	2 cut(s)	9, 45
Tru9I	TTAA	2 cut(s)	9, 45
TseI	GCWGC	2 cut(s)	299, 398
TspDTI	ATGAA	2 cut(s)	158, 252
Tth111I	GACNNNGTC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.