MD10G1180700.v1.1

serine threonine protein phosphatase 2A regulatory subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
27393118 .. 27399176
6059 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1180700.v1.1.491

Sequence Viewer

Length: 1515 bp
ATGGATATAGACACAGTAGCAGGGGATGTTGGTTCTTTGGATCCTGAGCTTTTACAGCTGCCGGAATTGTCACCGTTTGCACTTAAAACCAGTCCTCAAATTGCTGAGGATTTGTTTGCTCAGTGGCTTTCGCTCCCGCAGACCCGTCGTTTGGTGAAGTCTCTAGTAGATGATGCAATAGCCGGAATTCCTATCACTGCACCTGGGAGCACGTCAAGTGCAAATACTGCTGGGAGCAATGTGTTACCTTCCATGTTTCCGGCTGGAAGTACACCTCCACTTTCACCAAGAAGTTCCCCTGGTTCTCCGCGTTTTTCAAAGCCGAAGACTAGTCCTTCTTCTCTTCGCTCTCCACTAAAATTGGCTAGCGAACCAGTGCGAGAAGCCATTCCTCAGTTCTATTTTCATAATGGTCCACCACCACCAAAGGAACTTAAGGAGCAATGTCTTTCTAGAATTGATGACCTTTTCAGTGGTCAGATGGATGGATTGCAACTGCACGAGTTTAAGTTGGTTACAAAGGAGTTATGCAAGCTGCCAACATTTGTCTCTTCTGCCATCTTTAGAAAGATTGATGCTAGCTGCAGCGGGATAGTGACCAGGGATGCATTCATCAAATATTGGGTTGATGGAAACATGCTCACAATGGATACAGCAACTCAAATATTTAAAATTTTAAAGCAGTCTGATCGTAATTACCTTACTCAGGTAGACTTCAAACCCATTCTTCTAGAGCTTGTGGCAACTCATCCAGGGTTGGAATTTTTACATGGAACTCCTGAATTTCAAGAAAGATATGCTGAAACTGTAATATACAGAATATTTTACTACATAAACAGATCAGGAAATGGTCGCCTTACCCTTAGGGAGCTAAAACGAGGAAATCTAATTGCTGCCATGCAACATGCAGATGAGGAAGAGGACATTAACAAAGTTCTAAGGTACTTCTCATATGAACATTTTTATGTCATATACTGCAAATTTTGGGAGCTGGACACAGACCACGATTTCTTGATCGACAAAGAGAATCTTATTAGATATGGTAATCATGCCCTTACCTACAGGATCGTTGATAGAATATTTTCACAGATTCCGAGGAAATTTACTAGCAAGGTTGAAGGGAAGATGGGTTATGAAGATTTTGCTTACTTCATGTTGTCAGAGGAGGATAAGTCGTGTGAGCCTAGCCTTGAGTATTGGTTCAGATGTATAGATCTGGATGGAAATGGAGTTCTTACACCCAATGAGTTGCAGTTTTTTTATGAGGAGCAGCTGCATCGTATGGAATGCATGGCCCAAGAGCCTGTTCTATTTGAGGATATTTTGTGCCAAATAGTTGACATGATTGCACCAGAGAGGGAAGATTATATCACTCTAGCTGACTTGAAAGGTTGCAAACTTTCAGGAAATGTCTTCAATATCCTTTTCAACCTTAATAAATTCATAGCTTTTGAAAGTCGCGATCCATTTCTTATTCGTCAGGTATTTTTGCACGGGTTACATATGAGAAATTGA

Protein Analysis

505

Amino Acids

57.65

Weight (kDa)

5.32

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_13 PF17958 217 - 306 1.1e-33 EF-hand domain
EF-hand_7 PF13499 322 - 421 1.4e-08 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 711
AccII CGCG 2 cut(s) 310, 1461
AciI CCGC 3 cut(s) 137, 308, 588
AclWI GGATC 4 cut(s) 35, 48, 1073, 1457
AcsI RAATTY 7 cut(s) 186, 672, 761, 782, 980, 1100, 1439
AfaI GTAC 2 cut(s) 271, 944
AfiI CCNNNNNNNGG 2 cut(s) 151, 706
AflII CTTAAG 1 cut(s) 434
AgsI TTSAA 8 cut(s) 318, 718, 788, 1118, 1387, 1417, 1429, 1454
AhlI ACTAGT 1 cut(s) 329
AjiI CACGTC 1 cut(s) 213
AjnI CCWGG 4 cut(s) 202, 298, 599, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 1290, 1322
AloI GAACNNNNNNTCC 2 cut(s) 1215, 1247
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 2 cut(s) 165, 553
AlwI GGATC 4 cut(s) 35, 48, 1073, 1457
AoxI GGCC 1 cut(s) 1293
ApeKI GCWGC 7 cut(s) 58, 535, 582, 585, 893, 1270, 1273
ApoI RAATTY 7 cut(s) 186, 672, 761, 782, 980, 1100, 1439
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
Asp700I GAANNNNTTC 2 cut(s) 387, 1081
AspS9I GGNCC 2 cut(s) 413, 1294
AsuHPI GGTGA 3 cut(s) 63, 166, 276
AsuNHI GCTAGC 2 cut(s) 365, 578
AvaII GGWCC 1 cut(s) 413
AxyI CCTNAGG 1 cut(s) 863
BamHI GGATCC 1 cut(s) 40
BauI CACGAG 1 cut(s) 500
BbsI GAAGAC 2 cut(s) 332, 1405
Bbv12I GWGCWC 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 7 cut(s) 45, 522, 569, 597, 880, 1260, 1282
BccI CCATC 6 cut(s) 475, 479, 566, 623, 1120, 1214
BcgI CGANNNNNNTGC 6 cut(s) 128, 162, 671, 705, 1259, 1293
BciT130I CCWGG 4 cut(s) 204, 300, 601, 753
BciVI GTATCC 1 cut(s) 643
BcoDI GTCTC 2 cut(s) 165, 553
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 9 cut(s) 164, 330, 366, 453, 579, 731, 1107, 1185, 1376
BfmI CTRYAG 2 cut(s) 583, 1060
BfrI CTTAAG 1 cut(s) 434
BfuI GTATCC 1 cut(s) 643
BglII AGATCT 1 cut(s) 1213
BisI GCNGC 7 cut(s) 59, 536, 583, 586, 894, 1271, 1274
BlsI GCNGC 7 cut(s) 60, 537, 584, 587, 895, 1272, 1275
Bme1390I CCNGG 4 cut(s) 204, 300, 601, 753
Bme18I GGWCC 1 cut(s) 413
BmgBI CACGTC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 413, 1294
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 4 cut(s) 204, 300, 601, 753
BmsI GCATC 4 cut(s) 163, 565, 595, 1285
BmtI GCTAGC 2 cut(s) 369, 582
BpiI GAAGAC 2 cut(s) 332, 1405
Bpu10I CCTNAGC 2 cut(s) 45, 105
BpuEI CTTGAG 1 cut(s) 1211
BsaJI CCNNGG 5 cut(s) 203, 298, 600, 752, 1094
BsaXI ACNNNNNCTCC 2 cut(s) 1157, 1187
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 706
Bse1I ACTGG 2 cut(s) 90, 374
Bse21I CCTNAGG 1 cut(s) 863
Bse3DI GCAATG 2 cut(s) 244, 449
BseBI CCWGG 4 cut(s) 204, 300, 601, 753
BseDI CCNNGG 5 cut(s) 203, 298, 600, 752, 1094
BseGI GGATG 5 cut(s) 31, 490, 610, 748, 1225
BseLI CCNNNNNNNGG 2 cut(s) 151, 706
BseMI GCAATG 2 cut(s) 244, 449
BseMII CTCAG 5 cut(s) 36, 96, 134, 407, 719
BseNI ACTGG 2 cut(s) 90, 374
BseRI GAGGAG 2 cut(s) 1178, 1280
BseXI GCAGC 7 cut(s) 45, 522, 569, 597, 880, 1260, 1282
BseYI CCCAGC 1 cut(s) 230
BsgI GTGCAG 2 cut(s) 183, 482
Bsh1236I CGCG 2 cut(s) 310, 1461
BshFI GGCC 1 cut(s) 1295
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 3 cut(s) 62, 183, 260
BslI CCNNNNNNNGG 2 cut(s) 151, 706
BsmAI GTCTC 2 cut(s) 165, 553
BsmI GAATGC 2 cut(s) 608, 1292
BsnI GGCC 1 cut(s) 1295
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 7 cut(s) 40, 688, 839, 1014, 1065, 1213, 1462
Bsp68I TCGCGA 1 cut(s) 1461
BspACI CCGC 3 cut(s) 137, 308, 588
BspANI GGCC 1 cut(s) 1295
BspCNI CTCAG 5 cut(s) 37, 97, 133, 406, 718
BspFNI CGCG 2 cut(s) 310, 1461
BspLI GGNNCC 1 cut(s) 42
BspMAI CTGCAG 1 cut(s) 587
BspOI GCTAGC 2 cut(s) 369, 582
BspPI GGATC 4 cut(s) 35, 48, 1073, 1457
BspTI CTTAAG 1 cut(s) 434
BsrDI GCAATG 2 cut(s) 244, 449
BsrI ACTGG 2 cut(s) 90, 374
BssECI CCNNGG 5 cut(s) 203, 298, 600, 752, 1094
BssMI GATC 7 cut(s) 40, 688, 839, 1014, 1065, 1213, 1462
BssSI CACGAG 1 cut(s) 500
Bst2BI CACGAG 1 cut(s) 500
Bst2UI CCWGG 4 cut(s) 204, 300, 601, 753
Bst4CI ACNGT 3 cut(s) 16, 75, 808
Bst6I CTCTTC 3 cut(s) 348, 556, 912
BstAFI CTTAAG 1 cut(s) 434
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 3 cut(s) 367, 533, 580
BstDEI CTNAG 7 cut(s) 45, 105, 120, 393, 705, 863, 938
BstENI CCTNNNNNAGG 1 cut(s) 704
BstF5I GGATG 5 cut(s) 31, 490, 610, 748, 1225
BstFNI CGCG 2 cut(s) 310, 1461
BstKTI GATC 7 cut(s) 43, 691, 842, 1017, 1068, 1216, 1465
BstMAI GTCTC 2 cut(s) 165, 553
BstMBI GATC 7 cut(s) 40, 688, 839, 1014, 1065, 1213, 1462
BstMWI GCNNNNNNNGC 2 cut(s) 55, 227
BstNI CCWGG 4 cut(s) 204, 300, 601, 753
BstNSI RCATGY 2 cut(s) 640, 908
BstSCI CCNGG 4 cut(s) 202, 298, 599, 751
BstSFI CTRYAG 2 cut(s) 583, 1060
BstUI CGCG 2 cut(s) 310, 1461
BstV1I GCAGC 7 cut(s) 45, 522, 569, 597, 880, 1260, 1282
BstV2I GAAGAC 2 cut(s) 332, 1405
BstX2I RGATCY 2 cut(s) 40, 1213
BstYI RGATCY 2 cut(s) 40, 1213
Bsu36I CCTNAGG 1 cut(s) 863
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 1 cut(s) 1295
BtrI CACGTC 1 cut(s) 213
BtsCI GGATG 5 cut(s) 31, 490, 610, 748, 1225
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 4 cut(s) 128, 195, 381, 478
BtuMI TCGCGA 1 cut(s) 1461
Cac8I GCNNGC 3 cut(s) 367, 533, 580
Cfr13I GGNCC 2 cut(s) 413, 1294
Csp6I GTAC 2 cut(s) 270, 943
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 9 cut(s) 253, 637, 770, 898, 905, 1049, 1153, 1291, 1342
CviQI GTAC 2 cut(s) 270, 943
DdeI CTNAG 7 cut(s) 45, 105, 120, 393, 705, 863, 938
DpnI GATC 7 cut(s) 42, 690, 841, 1016, 1067, 1215, 1464
DpnII GATC 7 cut(s) 40, 688, 839, 1014, 1065, 1213, 1462
DraI TTTAAA 2 cut(s) 670, 678
Eam1104I CTCTTC 3 cut(s) 348, 556, 912
EarI CTCTTC 3 cut(s) 348, 556, 912
Eco47I GGWCC 1 cut(s) 413
Eco81I CCTNAGG 1 cut(s) 863
EcoNI CCTNNNNNAGG 1 cut(s) 704
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 4 cut(s) 202, 298, 599, 751
EcoT22I ATGCAT 2 cut(s) 610, 1292
FaeI CATG 9 cut(s) 256, 640, 773, 901, 908, 1052, 1156, 1294, 1345
FalI AAGNNNNNCTT 2 cut(s) 1014, 1046
FatI CATG 9 cut(s) 252, 636, 769, 897, 904, 1048, 1152, 1290, 1341
FauI CCCGC 2 cut(s) 144, 581
FauNDI CATATG 2 cut(s) 952, 1503
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 7 cut(s) 59, 536, 583, 586, 894, 1271, 1274
FokI GGATG 5 cut(s) 38, 497, 617, 735, 1232
Fsp4HI GCNGC 7 cut(s) 59, 536, 583, 586, 894, 1271, 1274
FspBI CTAG 9 cut(s) 164, 330, 366, 453, 579, 731, 1107, 1185, 1376
GluI GCNGC 7 cut(s) 59, 536, 583, 586, 894, 1271, 1274
GsaI CCCAGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 1295
HapII CCGG 3 cut(s) 62, 183, 260
Hin1II CATG 9 cut(s) 256, 640, 773, 901, 908, 1052, 1156, 1294, 1345
HincII GTYRAC 1 cut(s) 1339
HindII GTYRAC 1 cut(s) 1339
HinfI GANTC 2 cut(s) 1027, 1090
HpaII CCGG 3 cut(s) 62, 183, 260
HphI GGTGA 3 cut(s) 63, 166, 276
Hpy166II GTNNAC 4 cut(s) 272, 416, 712, 1339
Hpy188I TCNGA 5 cut(s) 480, 688, 1095, 1162, 1205
Hpy8I GTNNAC 4 cut(s) 272, 416, 712, 1339
Hpy99I CGWCG 1 cut(s) 150
HpyAV CCTTC 3 cut(s) 258, 345, 1112
HpyCH4III ACNGT 3 cut(s) 16, 75, 808
HpyCH4IV ACGT 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 227
HpyF3I CTNAG 7 cut(s) 45, 105, 120, 393, 705, 863, 938
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 9 cut(s) 256, 640, 773, 901, 908, 1052, 1156, 1294, 1345
Kzo9I GATC 7 cut(s) 40, 688, 839, 1014, 1065, 1213, 1462
LmnI GCTCC 7 cut(s) 138, 207, 234, 439, 868, 988, 1267
Lsp1109I GCAGC 7 cut(s) 45, 522, 569, 597, 880, 1260, 1282
LweI GCATC 4 cut(s) 163, 565, 595, 1285
MaeI CTAG 9 cut(s) 164, 330, 366, 453, 579, 731, 1107, 1185, 1376
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 5 cut(s) 69, 243, 514, 595, 1497
MalI GATC 7 cut(s) 42, 690, 841, 1016, 1067, 1215, 1464
MboI GATC 7 cut(s) 40, 688, 839, 1014, 1065, 1213, 1462
MflI RGATCY 2 cut(s) 40, 1213
MhlI GDGCHC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 738
Mph1103I ATGCAT 2 cut(s) 610, 1292
MroXI GAANNNNTTC 2 cut(s) 387, 1081
MseI TTAA 7 cut(s) 84, 435, 507, 669, 677, 927, 1434
MslI CAYNNNNRTG 2 cut(s) 909, 963
MspA1I CMGCKG 3 cut(s) 58, 588, 1273
MspCI CTTAAG 1 cut(s) 434
MspI CCGG 3 cut(s) 62, 183, 260
MspR9I CCNGG 4 cut(s) 204, 300, 601, 753
Mva1269I GAATGC 2 cut(s) 608, 1292
MvaI CCWGG 4 cut(s) 204, 300, 601, 753
MvnI CGCG 2 cut(s) 310, 1461
MwoI GCNNNNNNNGC 2 cut(s) 55, 227
NdeI CATATG 2 cut(s) 952, 1503
NdeII GATC 7 cut(s) 40, 688, 839, 1014, 1065, 1213, 1462
NheI GCTAGC 2 cut(s) 365, 578
NlaIII CATG 9 cut(s) 256, 640, 773, 901, 908, 1052, 1156, 1294, 1345
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 2 cut(s) 69, 595
NruI TCGCGA 1 cut(s) 1461
NsiI ATGCAT 2 cut(s) 610, 1292
NspI RCATGY 2 cut(s) 640, 908
PctI GAATGC 2 cut(s) 608, 1292
PdmI GAANNNNTTC 2 cut(s) 387, 1081
PfeI GAWTC 2 cut(s) 1027, 1090
PkrI GCNGC 7 cut(s) 60, 537, 584, 587, 895, 1272, 1275
Psp6I CCWGG 4 cut(s) 202, 298, 599, 751
PspFI CCCAGC 1 cut(s) 230
PspGI CCWGG 4 cut(s) 202, 298, 599, 751
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 2 cut(s) 413, 1294
PstI CTGCAG 1 cut(s) 587
PsuI RGATCY 2 cut(s) 40, 1213
PvuII CAGCTG 2 cut(s) 58, 1273
RruI TCGCGA 1 cut(s) 1461
RsaI GTAC 2 cut(s) 271, 944
RsaNI GTAC 2 cut(s) 270, 943
RseI CAYNNNNRTG 2 cut(s) 909, 963
SaqAI TTAA 7 cut(s) 84, 435, 507, 669, 677, 927, 1434
SatI GCNGC 7 cut(s) 59, 536, 583, 586, 894, 1271, 1274
Sau3AI GATC 7 cut(s) 40, 688, 839, 1014, 1065, 1213, 1462
Sau96I GGNCC 2 cut(s) 413, 1294
ScrFI CCNGG 4 cut(s) 204, 300, 601, 753
SduI GDGCHC 1 cut(s) 212
SfaNI GCATC 4 cut(s) 163, 565, 595, 1285
SfcI CTRYAG 2 cut(s) 583, 1060
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 2 cut(s) 909, 963
SmlI CTYRAG 2 cut(s) 434, 1190
SmoI CTYRAG 2 cut(s) 434, 1190
SpeI ACTAGT 1 cut(s) 329
SsiI CCGC 3 cut(s) 137, 308, 588
SspI AATATT 4 cut(s) 620, 666, 822, 1080
SspMI CTAG 9 cut(s) 164, 330, 366, 453, 579, 731, 1107, 1185, 1376
StyD4I CCNGG 4 cut(s) 202, 298, 599, 751
TaaI ACNGT 3 cut(s) 16, 75, 808
TaiI ACGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 1017
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 2 cut(s) 1027, 1090
Tru1I TTAA 7 cut(s) 84, 435, 507, 669, 677, 927, 1434
Tru9I TTAA 7 cut(s) 84, 435, 507, 669, 677, 927, 1434
TscAI CASTG 4 cut(s) 128, 202, 381, 478
TseFI GTSAC 2 cut(s) 69, 595
TseI GCWGC 7 cut(s) 58, 535, 582, 585, 893, 1270, 1273
Tsp45I GTSAC 2 cut(s) 69, 595
TspDTI ATGAA 6 cut(s) 395, 601, 969, 1141, 1149, 1432
TspRI CASTG 4 cut(s) 128, 202, 381, 478
Vha464I CTTAAG 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 413
XagI CCTNNNNNAGG 1 cut(s) 704
XapI RAATTY 7 cut(s) 186, 672, 761, 782, 980, 1100, 1439
XbaI TCTAGA 2 cut(s) 452, 730
XceI RCATGY 2 cut(s) 640, 908
XmiI GTMKAC 1 cut(s) 711
XmnI GAANNNNTTC 2 cut(s) 387, 1081
XspI CTAG 9 cut(s) 164, 330, 366, 453, 579, 731, 1107, 1185, 1376
Zsp2I ATGCAT 2 cut(s) 610, 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.