AT1G04110

PA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016576
Physical Location & Seq
Reverse (-)
1061297 .. 1063809
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04110.1

Sequence Viewer

Length: 2328 bp
ATGGAACCCAAACCTTTCTTTCTCTGCATTATCTTTCTTCTATTTTGTTCTTCTTCGTCAGAGATCCTGCAGAAGCAGACTTACATTGTTCAGCTTCATCCTAATAGCGAAACCGCTAAAACCTTTGCCTCAAAGTTTGATTGGCATCTTTCTTTTCTCCAAGAAGCGGTTTTAGGTGTTGAAGAAGAAGAGGAAGAGCCTTCTTCTCGACTTCTCTACTCCTATGGCTCTGCGATTGAAGGATTTGCTGCTCAGTTGACTGAATCAGAAGCCGAGATACTGAGATATTCACCTGAAGTTGTTGCAGTGAGACCTGACCATGTTCTTCAGGTTCAAACCACTTACTCTTACAAGTTCTTGGGACTCGACGGTTTTGGAAACTCCGGTGTATGGTCTAAATCTCGGTTTGGTCAAGGCACAATTATCGGCGTGCTTGATACTGGAGTTTGGCCTGAAAGTCCTAGCTTTGACGATACCGGAATGCCTTCGATTCCACGGAAATGGAAAGGGATTTGCCAAGAAGGAGAAAGTTTCAGTTCTTCGAGCTGTAACCGGAAGCTAATCGGTGCTAGATTCTTCATCAGAGGACACCGTGTCGCTAATTCACCAGAGGAATCACCAAACATGCCTCGTGAATACATTTCCGCAAGAGATTCAACGGGACACGGGACTCACACCGCCTCAACAGTTGGTGGATCCTCTGTTTCGATGGCGAATGTTCTTGGCAATGGAGCTGGTGTGGCTCGTGGGATGGCTCCTGGAGCTCACATTGCAGTCTATAAAGTCTGTTGGTTCAATGGTTGTTACAGCTCTGACATTCTAGCAGCTATAGATGTAGCGATTCAAGATAAAGTCGATGTTCTTTCGCTTTCCCTTGGCGGTTTCCCTATTCCTTTGTATGATGACACAATCGCCATTGGAACATTCCGAGCCATGGAACGCGGTATATCTGTAATCTGTGCAGCTGGTAACAACGGTCCAATCGAAAGCTCTGTTGCAAACACAGCTCCTTGGGTCTCAACCATTGGCGCAGGCACGCTTGATCGAAGATTTCCCGCTGTGGTCAGATTAGCCAACGGAAAGCTTCTCTATGGAGAGTCATTGTATCCGGGAAAAGGTATAAAGAATGCCGGGAGAGAGGTTGAGGTGATTTACGTCACAGGAGGAGATAAAGGAAGTGAGTTCTGTTTGAGAGGGTCACTTCCAAGAGAAGAAATCCGAGGCAAAATGGTGATTTGTGATCGCGGAGTCAATGGAAGATCGGAGAAAGGAGAAGCGGTTAAAGAAGCTGGAGGAGTTGCAATGATCTTAGCCAATACAGAGATCAACCAAGAAGAAGATTCTATTGACGTTCATCTCTTACCAGCTACATTGATTGGTTACACTGAGTCAGTCCTTCTGAAGGCTTATGTTAATGCCACGGTGAAACCAAAGGCGCGGATAATTTTTGGTGGTACGGTGATTGGGAGGTCACGAGCACCGGAGGTGGCTCAGTTTTCAGCTCGAGGACCGAGTTTAGCCAATCCTTCGATACTAAAACCGGATATGATTGCTCCGGGAGTCAATATCATTGCGGCTTGGCCTCAAAATCTAGGACCAACCGGACTTCCTTATGATTCAAGAAGAGTTAACTTCACTGTAATGTCAGGAACTTCAATGTCTTGTCCACATGTTAGCGGAATCACTGCTCTTATCCGGTCTGCATACCCGAACTGGTCTCCAGCTGCAATCAAATCCGCATTGATGACAACAGCGGATTTGTACGATCGTCAAGGGAAAGCGATAAAGGATGGTAACAAACCAGCCGGTGTGTTTGCGATTGGAGCAGGGCATGTGAATCCGCAAAAGGCGATAAACCCGGGATTGGTTTACAACATTCAACCAGTGGATTACATAACTTACCTCTGCACTCTTGGATTCACAAGATCAGATATTTTAGCAATCACTCATAAGAACGTGAGCTGCAATGGAATATTGCGGAAAAACCCGGGTTTTAGTCTCAATTACCCGTCGATAGCCGTGATTTTCAAACGTGGCAAGACTACGGAGATGATCACAAGGCGTGTCACTAACGTTGGGAGTCCTAACTCGATATACTCAGTGAATGTCAAGGCTCCAGAGGGGATCAAAGTTATTGTCAATCCTAAGAGACTTGTGTTCAAACACGTGGATCAGACGCTGAGCTATAGAGTATGGTTTGTATTGAAGAAGAAAAACAGAGGAGGGAAGGTGGCTAGCTTTGCACAAGGGCAGTTGACTTGGGTCAACTCTCATAATCTGATGCAGCGAGTTAGAAGTCCAATCTCTGTAACCTTGAAGACTAACTGA

Protein Analysis

775

Amino Acids

83.77

Weight (kDa)

9.15

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 27 - 111 4.4e-20 Peptidase inhibitor I9
Peptidase_S8 PF00082 137 - 596 2.7e-51 Subtilase family
PA PF02225 402 - 463 3.9e-10 PA domain
fn3_6 PF17766 667 - 770 2e-25 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016576)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04110
fragaria_vesca FvH4_2g20460
malus_domestica MD05G1188400.v1.1 MD10G1175900.v1.1
prunus_persica Prupe.8G214900_v2.0.a1
pyrus_communis pycom10g15150
rosa_chinensis RchiOBHm_Chr6g0286551
rosa_laevigata RLG00000012558
rosa_multiflora Rmu_sc0004628.1_g000013
rosa_roxburghii Rroxscaffold_7G00182190
rosa_rugosa Rorug06G0181100
rosa_samantha Rh6AG293900 Rh6BG297000
rosa_wichuraiana Rw6G025300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 942, 1245, 1438
AclI AACGTT 1 cut(s) 2073
AclWI GGATC 5 cut(s) 58, 690, 703, 2132, 2178
AcuI CTGAAG 3 cut(s) 311, 315, 1421
AcvI CACGTG 1 cut(s) 2167
AfaI GTAC 2 cut(s) 1456, 1763
AfiI CCNNNNNNNGG 6 cut(s) 166, 390, 934, 1115, 1402, 1864
AflIII ACRYGT 2 cut(s) 1669, 2164
AhdI GACNNNNNGTC 1 cut(s) 593
AjnI CCWGG 1 cut(s) 757
Alw21I GWGCWC 2 cut(s) 766, 1480
Alw26I GTCTC 5 cut(s) 304, 1021, 1722, 2003, 2143
AlwI GGATC 5 cut(s) 58, 690, 703, 2132, 2178
AlwNI CAGNNNCTG 1 cut(s) 2179
Ama87I CYCGRG 3 cut(s) 1503, 1858, 1987
AoxI GGCC 2 cut(s) 449, 1580
ApeKI GCWGC 6 cut(s) 248, 824, 962, 1724, 1962, 2284
ArsI GACNNNNNNTTYG 2 cut(s) 2121, 2153
Asp700I GAANNNNTTC 1 cut(s) 484
AspLEI GCGC 2 cut(s) 1031, 1438
AspS9I GGNCC 3 cut(s) 977, 1508, 1595
AsuC2I CCSGG 7 cut(s) 1110, 1132, 1557, 1859, 1860, 1988, 1989
AsuHPI GGTGA 7 cut(s) 282, 597, 609, 1159, 1243, 1435, 1471
AsuNHI GCTAGC 1 cut(s) 2234
AvaI CYCGRG 3 cut(s) 1503, 1858, 1987
AvaII GGWCC 3 cut(s) 977, 1508, 1595
BaeI ACNNNNGTAYC 2 cut(s) 429, 462
BamHI GGATCC 1 cut(s) 695
BanII GRGCYC 1 cut(s) 766
BarI GAAGNNNNNNTAC 4 cut(s) 65, 97, 261, 293
BauI CACGAG 3 cut(s) 630, 744, 1473
BbrPI CACGTG 1 cut(s) 2167
BbsI GAAGAC 1 cut(s) 2324
Bbv12I GWGCWC 2 cut(s) 766, 1480
BbvI GCAGC 6 cut(s) 235, 836, 974, 1711, 1949, 2296
BccI CCATC 3 cut(s) 703, 745, 1784
BceAI ACGGC 1 cut(s) 2003
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 1 cut(s) 759
BciVI GTATCC 1 cut(s) 1116
BclI TGATCA 1 cut(s) 2052
BcnI CCSGG 7 cut(s) 1110, 1132, 1557, 1859, 1860, 1988, 1989
BcoDI GTCTC 5 cut(s) 304, 1021, 1722, 2003, 2143
BfaI CTAG 5 cut(s) 462, 570, 821, 1592, 2235
BfmI CTRYAG 3 cut(s) 68, 828, 2185
BfuI GTATCC 1 cut(s) 1116
BisI GCNGC 7 cut(s) 249, 825, 963, 1575, 1725, 1963, 2285
BlpI GCTNAGC 1 cut(s) 2180
BlsI GCNGC 7 cut(s) 250, 826, 964, 1576, 1726, 1964, 2286
Bme1390I CCNGG 8 cut(s) 759, 1110, 1132, 1557, 1859, 1860, 1988, 1989
Bme18I GGWCC 3 cut(s) 977, 1508, 1595
BmeRI GACNNNNNGTC 1 cut(s) 593
BmeT110I CYCGRG 3 cut(s) 1503, 1858, 1987
BmgT120I GGNCC 3 cut(s) 977, 1508, 1595
BmiI GGNNCC 4 cut(s) 6, 697, 756, 2115
BmrFI CCNGG 8 cut(s) 759, 1110, 1132, 1557, 1859, 1860, 1988, 1989
BmsI GCATC 2 cut(s) 154, 2271
BmtI GCTAGC 1 cut(s) 2238
BoxI GACNNNNGTC 1 cut(s) 2261
BpiI GAAGAC 1 cut(s) 2324
BpmI CTGGAG 5 cut(s) 462, 780, 1311, 1704, 2100
Bpu1102I GCTNAGC 1 cut(s) 2180
BpuMI CCSGG 7 cut(s) 1110, 1132, 1557, 1859, 1860, 1988, 1989
BsaAI YACGTR 1 cut(s) 2167
BsaBI GATNNNNATC 1 cut(s) 144
BsaI GGTCTC 3 cut(s) 304, 1021, 1722
BsaJI CCNNGG 8 cut(s) 494, 874, 933, 1010, 1219, 1419, 1858, 1987
BsaWI WCCGGW 7 cut(s) 383, 476, 552, 1480, 1540, 1601, 1695
BsaXI ACNNNNNCTCC 6 cut(s) 723, 753, 1263, 1293, 2214, 2244
Bsc4I CCNNNNNNNGG 6 cut(s) 166, 390, 934, 1115, 1402, 1864
Bse118I RCCGGY 1 cut(s) 1805
Bse1I ACTGG 3 cut(s) 445, 1718, 1883
Bse3DI GCAATG 5 cut(s) 733, 768, 1308, 1569, 1972
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 8 cut(s) 494, 874, 933, 1010, 1219, 1419, 1858, 1987
BseGI GGATG 3 cut(s) 97, 756, 1795
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 6 cut(s) 166, 390, 934, 1115, 1402, 1864
BseMI GCAATG 5 cut(s) 733, 768, 1308, 1569, 1972
BseMII CTCAG 6 cut(s) 266, 272, 1377, 1505, 2112, 2171
BseNI ACTGG 3 cut(s) 445, 1718, 1883
BseRI GAGGAG 3 cut(s) 1179, 1308, 2235
BseXI GCAGC 6 cut(s) 235, 836, 974, 1711, 1949, 2296
BsgI GTGCAG 2 cut(s) 981, 1891
Bsh1236I CGCG 3 cut(s) 942, 1245, 1438
Bsh1285I CGRYCG 1 cut(s) 1768
BshFI GGCC 2 cut(s) 451, 1582
BsiEI CGRYCG 1 cut(s) 1768
BsiHKAI GWGCWC 2 cut(s) 766, 1480
BsiHKCI CYCGRG 3 cut(s) 1503, 1858, 1987
BslFI GGGAC 3 cut(s) 375, 675, 682
BslI CCNNNNNNNGG 6 cut(s) 166, 390, 934, 1115, 1402, 1864
BsmAI GTCTC 5 cut(s) 304, 1021, 1722, 2003, 2143
BsmFI GGGAC 3 cut(s) 375, 675, 682
BsmI GAATGC 2 cut(s) 486, 1132
BsnI GGCC 2 cut(s) 451, 1582
Bso31I GGTCTC 3 cut(s) 304, 1021, 1722
BsoBI CYCGRG 3 cut(s) 1503, 1858, 1987
Bsp1286I GDGCHC 2 cut(s) 766, 1480
Bsp1720I GCTNAGC 1 cut(s) 2180
Bsp19I CCATGG 1 cut(s) 933
BspANI GGCC 2 cut(s) 451, 1582
BspCNI CTCAG 6 cut(s) 265, 273, 1378, 1504, 2111, 2172
BspFNI CGCG 3 cut(s) 942, 1245, 1438
BspLI GGNNCC 4 cut(s) 6, 697, 756, 2115
BspMAI CTGCAG 1 cut(s) 72
BspOI GCTAGC 1 cut(s) 2238
BspPI GGATC 5 cut(s) 58, 690, 703, 2132, 2178
BspQI GCTCTTC 1 cut(s) 189
BspTNI GGTCTC 3 cut(s) 304, 1021, 1722
BsrDI GCAATG 5 cut(s) 733, 768, 1308, 1569, 1972
BsrFI RCCGGY 1 cut(s) 1805
BsrI ACTGG 3 cut(s) 445, 1718, 1883
BssAI RCCGGY 1 cut(s) 1805
BssECI CCNNGG 8 cut(s) 494, 874, 933, 1010, 1219, 1419, 1858, 1987
BssSI CACGAG 3 cut(s) 630, 744, 1473
BssT1I CCWWGG 3 cut(s) 874, 933, 1010
Bst2BI CACGAG 3 cut(s) 630, 744, 1473
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 7 cut(s) 371, 593, 688, 977, 1423, 1459, 1639
Bst6I CTCTTC 3 cut(s) 183, 189, 1618
BstBAI YACGTR 1 cut(s) 2167
BstC8I GCNNGC 4 cut(s) 431, 1033, 1037, 2236
BstDEI CTNAG 8 cut(s) 252, 281, 1309, 1386, 1491, 2098, 2145, 2180
BstDSI CCRYGG 3 cut(s) 494, 933, 1419
BstENI CCTNNNNNAGG 1 cut(s) 1400
BstF5I GGATG 3 cut(s) 97, 756, 1795
BstFNI CGCG 3 cut(s) 942, 1245, 1438
BstHHI GCGC 2 cut(s) 1031, 1438
BstMAI GTCTC 5 cut(s) 304, 1021, 1722, 2003, 2143
BstMCI CGRYCG 1 cut(s) 1768
BstMWI GCNNNNNNNGC 6 cut(s) 740, 761, 770, 1004, 1823, 2240
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 3 cut(s) 628, 1673, 1835
BstPAI GACNNNNGTC 1 cut(s) 2261
BstSCI CCNGG 8 cut(s) 757, 1108, 1130, 1555, 1857, 1858, 1986, 1987
BstSFI CTRYAG 3 cut(s) 68, 828, 2185
BstUI CGCG 3 cut(s) 942, 1245, 1438
BstV1I GCAGC 6 cut(s) 235, 836, 974, 1711, 1949, 2296
BstV2I GAAGAC 1 cut(s) 2324
BstX2I RGATCY 2 cut(s) 63, 695
BstXI CCANNNNNNTGG 1 cut(s) 501
BstYI RGATCY 2 cut(s) 63, 695
BsuI GTATCC 1 cut(s) 1116
BsuRI GGCC 2 cut(s) 451, 1582
BtgI CCRYGG 3 cut(s) 494, 933, 1419
BtsCI GGATG 3 cut(s) 97, 756, 1795
BtsI GCAGTG 2 cut(s) 312, 1683
BtsIMutI CAGTG 6 cut(s) 312, 1383, 1635, 1683, 1890, 2106
Cac8I GCNNGC 4 cut(s) 431, 1033, 1037, 2236
CaiI CAGNNNCTG 1 cut(s) 2179
CfoI GCGC 2 cut(s) 1031, 1438
Cfr10I RCCGGY 1 cut(s) 1805
Cfr13I GGNCC 3 cut(s) 977, 1508, 1595
Cfr9I CCCGGG 2 cut(s) 1858, 1987
CseI GACGC 1 cut(s) 2185
Csp6I GTAC 2 cut(s) 1455, 1762
CviAII CATG 5 cut(s) 320, 625, 934, 1670, 1832
CviQI GTAC 2 cut(s) 1455, 1762
DdeI CTNAG 8 cut(s) 252, 281, 1309, 1386, 1491, 2098, 2145, 2180
DriI GACNNNNNGTC 1 cut(s) 593
Eam1104I CTCTTC 3 cut(s) 183, 189, 1618
Eam1105I GACNNNNNGTC 1 cut(s) 593
EarI CTCTTC 3 cut(s) 183, 189, 1618
Ecl136II GAGCTC 1 cut(s) 764
Eco130I CCWWGG 3 cut(s) 874, 933, 1010
Eco24I GRGCYC 1 cut(s) 766
Eco31I GGTCTC 3 cut(s) 304, 1021, 1722
Eco47I GGWCC 3 cut(s) 977, 1508, 1595
Eco53kI GAGCTC 1 cut(s) 764
Eco57I CTGAAG 3 cut(s) 311, 315, 1421
Eco72I CACGTG 1 cut(s) 2167
Eco88I CYCGRG 3 cut(s) 1503, 1858, 1987
EcoICRI GAGCTC 1 cut(s) 764
EcoNI CCTNNNNNAGG 1 cut(s) 1400
EcoRII CCWGG 1 cut(s) 757
EcoT14I CCWWGG 3 cut(s) 874, 933, 1010
EcoT38I GRGCYC 1 cut(s) 766
ErhI CCWWGG 3 cut(s) 874, 933, 1010
FaeI CATG 5 cut(s) 323, 628, 937, 1673, 1835
FaqI GGGAC 3 cut(s) 375, 675, 682
FatI CATG 5 cut(s) 319, 624, 933, 1669, 1831
FauI CCCGC 1 cut(s) 1063
FbaI TGATCA 1 cut(s) 2052
Fnu4HI GCNGC 7 cut(s) 249, 825, 963, 1575, 1725, 1963, 2285
FokI GGATG 3 cut(s) 84, 763, 1802
FriOI GRGCYC 1 cut(s) 766
Fsp4HI GCNGC 7 cut(s) 249, 825, 963, 1575, 1725, 1963, 2285
FspBI CTAG 5 cut(s) 462, 570, 821, 1592, 2235
GlaI GCGC 2 cut(s) 1030, 1437
GluI GCNGC 7 cut(s) 249, 825, 963, 1575, 1725, 1963, 2285
GsuI CTGGAG 5 cut(s) 462, 780, 1311, 1704, 2100
HaeIII GGCC 2 cut(s) 451, 1582
HgaI GACGC 1 cut(s) 2185
HhaI GCGC 2 cut(s) 1031, 1438
Hin1II CATG 5 cut(s) 323, 628, 937, 1673, 1835
Hin6I GCGC 2 cut(s) 1029, 1436
HinP1I GCGC 2 cut(s) 1029, 1436
HincII GTYRAC 4 cut(s) 258, 1630, 2256, 2266
HindII GTYRAC 4 cut(s) 258, 1630, 2256, 2266
HindIII AAGCTT 1 cut(s) 1082
HpaI GTTAAC 1 cut(s) 1630
HphI GGTGA 7 cut(s) 282, 597, 609, 1159, 1243, 1435, 1471
Hpy166II GTNNAC 6 cut(s) 258, 1630, 1667, 1870, 2256, 2266
Hpy188III TCNNGA 7 cut(s) 207, 632, 845, 1473, 1620, 1647, 2117
Hpy8I GTNNAC 6 cut(s) 258, 1630, 1667, 1870, 2256, 2266
Hpy99I CGWCG 2 cut(s) 371, 2014
HpyAV CCTTC 8 cut(s) 210, 233, 495, 515, 1396, 1406, 1536, 2221
HpyCH4III ACNGT 7 cut(s) 371, 593, 688, 977, 1423, 1459, 1639
HpyCH4IV ACGT 6 cut(s) 1155, 1350, 1956, 2032, 2073, 2166
HpyF10VI GCNNNNNNNGC 6 cut(s) 740, 761, 770, 1004, 1823, 2240
HpyF3I CTNAG 8 cut(s) 252, 281, 1309, 1386, 1491, 2098, 2145, 2180
HpySE526I ACGT 6 cut(s) 1155, 1350, 1956, 2032, 2073, 2166
Hsp92II CATG 5 cut(s) 323, 628, 937, 1673, 1835
HspAI GCGC 2 cut(s) 1029, 1436
Ksp22I TGATCA 1 cut(s) 2052
KspAI GTTAAC 1 cut(s) 1630
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 7 cut(s) 731, 760, 761, 1012, 1558, 1823, 2119
Lsp1109I GCAGC 6 cut(s) 235, 836, 974, 1711, 1949, 2296
LweI GCATC 2 cut(s) 154, 2271
MaeI CTAG 5 cut(s) 462, 570, 821, 1592, 2235
MaeII ACGT 6 cut(s) 1155, 1350, 1956, 2032, 2073, 2166
MflI RGATCY 2 cut(s) 63, 695
MhlI GDGCHC 2 cut(s) 766, 1480
MluCI AATT 4 cut(s) 420, 601, 1443, 2002
MlyI GAGTC 7 cut(s) 357, 664, 1106, 1257, 1397, 1569, 2089
MroXI GAANNNNTTC 1 cut(s) 484
MseI TTAA 3 cut(s) 1281, 1413, 1629
MslI CAYNNNNRTG 2 cut(s) 499, 1640
MspA1I CMGCKG 4 cut(s) 965, 1058, 1724, 1754
MspR9I CCNGG 8 cut(s) 759, 1110, 1132, 1557, 1859, 1860, 1988, 1989
Mva1269I GAATGC 2 cut(s) 486, 1132
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 3 cut(s) 942, 1245, 1438
MwoI GCNNNNNNNGC 6 cut(s) 740, 761, 770, 1004, 1823, 2240
NciI CCSGG 7 cut(s) 1110, 1132, 1557, 1859, 1860, 1988, 1989
NcoI CCATGG 1 cut(s) 933
NheI GCTAGC 1 cut(s) 2234
NlaIII CATG 5 cut(s) 323, 628, 937, 1673, 1835
NlaIV GGNNCC 4 cut(s) 6, 697, 756, 2115
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 4 cut(s) 1156, 1197, 1470, 2065
NspI RCATGY 3 cut(s) 628, 1673, 1835
PaeR7I CTCGAG 1 cut(s) 1503
PciI ACATGT 1 cut(s) 1669
PciSI GCTCTTC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 981
PctI GAATGC 2 cut(s) 486, 1132
PdmI GAANNNNTTC 1 cut(s) 484
PfoI TCCNGGA 3 cut(s) 757, 1108, 1555
PkrI GCNGC 7 cut(s) 250, 826, 964, 1576, 1726, 1964, 2286
Ple19I CGATCG 1 cut(s) 1768
PleI GAGTC 7 cut(s) 357, 664, 1105, 1256, 1396, 1568, 2088
PmaCI CACGTG 1 cut(s) 2167
PmlI CACGTG 1 cut(s) 2167
PpsI GAGTC 7 cut(s) 357, 664, 1105, 1256, 1396, 1568, 2088
Ppu21I YACGTR 1 cut(s) 2167
PscI ACATGT 1 cut(s) 1669
PshAI GACNNNNGTC 1 cut(s) 2261
Psp124BI GAGCTC 1 cut(s) 766
Psp1406I AACGTT 1 cut(s) 2073
Psp6I CCWGG 1 cut(s) 757
PspCI CACGTG 1 cut(s) 2167
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 4 cut(s) 6, 697, 756, 2115
PspPI GGNCC 3 cut(s) 977, 1508, 1595
PspXI VCTCGAGB 1 cut(s) 1503
PstI CTGCAG 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 2179
PsuI RGATCY 2 cut(s) 63, 695
PvuI CGATCG 1 cut(s) 1768
PvuII CAGCTG 2 cut(s) 965, 1724
RsaI GTAC 2 cut(s) 1456, 1763
RsaNI GTAC 2 cut(s) 1455, 1762
RseI CAYNNNNRTG 2 cut(s) 499, 1640
SacI GAGCTC 1 cut(s) 766
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 3 cut(s) 1281, 1413, 1629
SatI GCNGC 7 cut(s) 249, 825, 963, 1575, 1725, 1963, 2285
Sau96I GGNCC 3 cut(s) 977, 1508, 1595
SchI GAGTC 7 cut(s) 357, 664, 1106, 1257, 1397, 1569, 2089
ScrFI CCNGG 8 cut(s) 759, 1110, 1132, 1557, 1859, 1860, 1988, 1989
SduI GDGCHC 2 cut(s) 766, 1480
SfaNI GCATC 2 cut(s) 154, 2271
SfcI CTRYAG 3 cut(s) 68, 828, 2185
Sfr274I CTCGAG 1 cut(s) 1503
SinI GGWCC 3 cut(s) 977, 1508, 1595
SlaI CTCGAG 1 cut(s) 1503
SmaI CCCGGG 2 cut(s) 1860, 1989
SmiMI CAYNNNNRTG 2 cut(s) 499, 1640
SmlI CTYRAG 1 cut(s) 1503
SmoI CTYRAG 1 cut(s) 1503
Sse9I AATT 4 cut(s) 420, 601, 1443, 2002
SspI AATATT 1 cut(s) 1974
SspMI CTAG 5 cut(s) 462, 570, 821, 1592, 2235
SstI GAGCTC 1 cut(s) 766
StyD4I CCNGG 8 cut(s) 757, 1108, 1130, 1555, 1857, 1858, 1986, 1987
StyI CCWWGG 3 cut(s) 874, 933, 1010
TaaI ACNGT 7 cut(s) 371, 593, 688, 977, 1423, 1459, 1639
TaiI ACGT 6 cut(s) 1158, 1353, 1959, 2035, 2076, 2169
TaqII GACCGA 1 cut(s) 1525
TasI AATT 4 cut(s) 420, 601, 1443, 2002
TauI GCSGC 1 cut(s) 1577
Tru1I TTAA 3 cut(s) 1281, 1413, 1629
Tru9I TTAA 3 cut(s) 1281, 1413, 1629
TscAI CASTG 6 cut(s) 312, 1390, 1642, 1690, 1890, 2106
TseFI GTSAC 4 cut(s) 1156, 1197, 1470, 2065
TseI GCWGC 6 cut(s) 248, 824, 962, 1724, 1962, 2284
Tsp45I GTSAC 4 cut(s) 1156, 1197, 1470, 2065
TspDTI ATGAA 3 cut(s) 86, 568, 1343
TspGWI ACGGA 3 cut(s) 511, 1092, 2060
TspMI CCCGGG 2 cut(s) 1858, 1987
TspRI CASTG 6 cut(s) 312, 1390, 1642, 1690, 1890, 2106
VpaK11BI GGWCC 3 cut(s) 977, 1508, 1595
XagI CCTNNNNNAGG 1 cut(s) 1400
XceI RCATGY 3 cut(s) 628, 1673, 1835
XhoI CTCGAG 1 cut(s) 1503
XmaI CCCGGG 2 cut(s) 1858, 1987
XmnI GAANNNNTTC 1 cut(s) 484
XspI CTAG 5 cut(s) 462, 570, 821, 1592, 2235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.