Rh6BG297000

Subtilisin-like protease

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
52660901 .. 52662292
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG297000.1

Sequence Viewer

Length: 1392 bp
ATGGAGCATGGAATTTCAGTTGTATGTGCAGCAGGAAACAATGGTCCAATTGAAAGCTCAGTTGCCAATGAAGCTCCTTGGATTGCCACCATCGGCGCGAGCACATTAGACCGGAGATTCCCGGCCATAGTTCAAATGGGTGATGGAAAAGTCCTTTATGGAGAATCCATGTACCCAGGAAACCATTTGAAGAGAAGTACTGGAAAAGAGGTTGAAGTTGTTTATGTGACTGATGAAAATACAGGAAGTGAATTTTGCTTCAGGGGGTCTCTCCCAAGAGCAAAAGTACGCGGCAAGATAGTGGTCTGTGACCGTGGTGTCAATGGTAGGGCGGAGAAAGGTGAAGTGGTAAAAGAAGCTGGAGGAGCTGGAATGATTTTGGCCAATACAGAGGTAAACCTGGAGGAGGACTCTGTTGATGTCCATGTCTTGCCTGCGACTCTGATTGGCTACAAAGAGTCCATTCACTTGAAGGCTTACATAAACTCTACTAGGAGACCAATGGCTAGAATTGTGTTTGAAGGCACAGTTATAGGGAAGTCCAGAGCACCAGCAGTAGCTCAGTTCTCAGCTAGAGGACCCAGTTTTTCGAACCCTTCAATCCTCAAACCTGATGTGATTGCTCCGGGAGTCAACATCATTGCTGCTTGGCCTCAAAACATGGGTCCCACCGGCCTTCCAGAAGATTCTAGGAGAGTGAATTTCACTGTCATGTCAGGGACTTCAATGGCATGTCCTCATGCTAGTGGAATTGCTGCACTTGTACGCACAGCTCATCCGAAATGGAGCCCCGCAGCTGTCAAATCTGCTATTATGACAACTGCTGATGTAACTGATCATTCAGGGAATCCGATAATGGATGGAGGCAAACCAGCCGGAGTTTTTGCAATTGGTGCTGGACATGTAAACCCTGTGAGAGCTGTTGATCCGGGGTTGATCTACGACATCAGGCCGGAGGAGTATGTCACTCATTTGTGCACTCTTGGATACAAGAAATCGGATATCTTAACAATCACTCACAGGAATGTTAGCTGCCTTGAAATTTTGAAGATGAATAGGGGTTTCAGCCTCAATTACCCCTCCATTTCAGTAACTTTCAAACACGGCATGAGAAGTAAAATGATCAGAAGACGAGTAACAAACGTAGGGAATCCACATTCCACTTACTTGCTGGAAGTAATGGCACCTAAGGAAGTTAGAGTGAAAGTTAAGCCTCAGAGGTTAGTTTTCACAGGCATCAACCAGAGTTTGAGTTATAGGGTATGGTTTATATCGAGGAAGAGAATCAGAAAAGATAACATGAGTTTTGCACAAGGACATTTAGCATGGGTGAATTCTAACAATAGTAGCTTTCACAAGGTCAAAAGTCCCATCTCTGTGACTTGGAAGTAA

Protein Analysis

463

Amino Acids

50.34

Weight (kDa)

9.75

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 2 - 279 5.4e-26 Subtilase family
PA PF02225 72 - 153 1.4e-13 PA domain
fn3_6 PF17766 357 - 460 1.8e-24 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016576)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04110
fragaria_vesca FvH4_2g20460
malus_domestica MD05G1188400.v1.1 MD10G1175900.v1.1
prunus_persica Prupe.8G214900_v2.0.a1
pyrus_communis pycom10g15150
rosa_chinensis RchiOBHm_Chr6g0286551
rosa_laevigata RLG00000012558
rosa_multiflora Rmu_sc0004628.1_g000013
rosa_roxburghii Rroxscaffold_7G00182190
rosa_rugosa Rorug06G0181100
rosa_samantha Rh6AG293900 Rh6BG297000
rosa_wichuraiana Rw6G025300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 1183
AccII CGCG 2 cut(s) 98, 291
AciI CCGC 3 cut(s) 291, 332, 792
AclWI GGATC 1 cut(s) 920
AcoI YGGCCR 2 cut(s) 123, 381
AcsI RAATTY 5 cut(s) 12, 251, 700, 1041, 1333
AcuI CTGAAG 1 cut(s) 244
AfaI GTAC 4 cut(s) 173, 199, 288, 765
AfiI CCNNNNNNNGG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 901
AjnI CCWGG 2 cut(s) 175, 399
Alw21I GWGCWC 3 cut(s) 104, 550, 980
Alw26I GTCTC 2 cut(s) 273, 490
Alw44I GTGCAC 1 cut(s) 976
AlwI GGATC 1 cut(s) 920
AoxI GGCC 5 cut(s) 123, 381, 650, 673, 950
ApaLI GTGCAC 1 cut(s) 976
ApeKI GCWGC 5 cut(s) 29, 644, 755, 794, 1032
ApoI RAATTY 5 cut(s) 12, 251, 700, 1041, 1333
ArsI GACNNNNNNTTYG 2 cut(s) 649, 681
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 3 cut(s) 44, 578, 665
AsuC2I CCSGG 3 cut(s) 122, 627, 930
AsuHPI GGTGA 3 cut(s) 152, 353, 1342
AsuII TTCGAA 1 cut(s) 590
AvaII GGWCC 3 cut(s) 44, 578, 665
AxyI CCTNAGG 1 cut(s) 1188
BaeGI GKGCMC 1 cut(s) 980
BalI TGGCCA 1 cut(s) 383
BanI GGYRCC 1 cut(s) 1183
BanII GRGCYC 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 1135
Bbv12I GWGCWC 3 cut(s) 104, 550, 980
BbvI GCAGC 5 cut(s) 41, 631, 742, 806, 1019
BccI CCATC 4 cut(s) 98, 137, 854, 1379
BceAI ACGGC 1 cut(s) 1120
BciT130I CCWGG 2 cut(s) 177, 401
BciVI GTATCC 1 cut(s) 980
BclI TGATCA 2 cut(s) 835, 1122
BcnI CCSGG 3 cut(s) 122, 627, 930
BcoDI GTCTC 2 cut(s) 273, 490
BfaI CTAG 5 cut(s) 492, 507, 573, 690, 744
BfuI GTATCC 1 cut(s) 980
BisI GCNGC 6 cut(s) 30, 292, 645, 756, 795, 1033
BlsI GCNGC 6 cut(s) 31, 293, 646, 757, 796, 1034
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 5 cut(s) 122, 177, 401, 627, 930
Bme18I GGWCC 3 cut(s) 44, 578, 665
BmgT120I GGNCC 3 cut(s) 44, 578, 665
BmiI GGNNCC 5 cut(s) 580, 666, 667, 788, 1185
BmrFI CCNGG 5 cut(s) 122, 177, 401, 627, 930
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 1 cut(s) 1245
BmuI ACTGGG 1 cut(s) 576
BpiI GAAGAC 1 cut(s) 1135
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpmI CTGGAG 2 cut(s) 381, 422
Bpu14I TTCGAA 1 cut(s) 590
BpuMI CCSGG 3 cut(s) 122, 627, 930
BsaI GGTCTC 2 cut(s) 273, 490
BsaJI CCNNGG 4 cut(s) 77, 175, 313, 929
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse118I RCCGGY 1 cut(s) 671
Bse1I ACTGG 2 cut(s) 205, 582
Bse21I CCTNAGG 1 cut(s) 1188
Bse3DI GCAATG 1 cut(s) 639
BseBI CCWGG 2 cut(s) 177, 401
BseDI CCNNGG 4 cut(s) 77, 175, 313, 929
BseGI GGATG 2 cut(s) 775, 865
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 4 cut(s) 72, 575, 582, 1229
BseNI ACTGG 2 cut(s) 205, 582
BseRI GAGGAG 3 cut(s) 378, 419, 971
BseSI GKGCMC 1 cut(s) 980
BseXI GCAGC 5 cut(s) 41, 631, 742, 806, 1019
BsgI GTGCAG 2 cut(s) 48, 741
Bsh1236I CGCG 2 cut(s) 98, 291
BshFI GGCC 5 cut(s) 125, 383, 652, 675, 952
BshNI GGYRCC 1 cut(s) 1183
BsiHKAI GWGCWC 3 cut(s) 104, 550, 980
BsiSI CCGG 7 cut(s) 112, 122, 626, 672, 876, 929, 953
BslFI GGGAC 3 cut(s) 651, 733, 1353
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 2 cut(s) 273, 490
BsmFI GGGAC 3 cut(s) 651, 733, 1353
BsnI GGCC 5 cut(s) 125, 383, 652, 675, 952
Bso31I GGTCTC 2 cut(s) 273, 490
Bsp119I TTCGAA 1 cut(s) 590
Bsp1286I GDGCHC 4 cut(s) 104, 550, 791, 980
Bsp143I GATC 4 cut(s) 835, 925, 936, 1122
BspACI CCGC 3 cut(s) 291, 332, 792
BspANI GGCC 5 cut(s) 125, 383, 652, 675, 952
BspCNI CTCAG 4 cut(s) 71, 574, 581, 1228
BspFNI CGCG 2 cut(s) 98, 291
BspLI GGNNCC 5 cut(s) 580, 666, 667, 788, 1185
BspPI GGATC 1 cut(s) 920
BspT104I TTCGAA 1 cut(s) 590
BspT107I GGYRCC 1 cut(s) 1183
BspTNI GGTCTC 2 cut(s) 273, 490
BsrDI GCAATG 1 cut(s) 639
BsrFI RCCGGY 1 cut(s) 671
BsrI ACTGG 2 cut(s) 205, 582
BssAI RCCGGY 1 cut(s) 671
BssECI CCNNGG 4 cut(s) 77, 175, 313, 929
BssMI GATC 4 cut(s) 835, 925, 936, 1122
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 2 cut(s) 177, 401
Bst4CI ACNGT 3 cut(s) 314, 529, 709
Bst6I CTCTTC 2 cut(s) 185, 1274
BstAPI GCANNNNNTGC 1 cut(s) 893
BstBI TTCGAA 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 100, 435
BstDEI CTNAG 5 cut(s) 58, 561, 568, 1188, 1215
BstDSI CCRYGG 1 cut(s) 313
BstENI CCTNNNNNAGG 1 cut(s) 404
BstF5I GGATG 2 cut(s) 775, 865
BstFNI CGCG 2 cut(s) 98, 291
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 4 cut(s) 838, 928, 939, 1125
BstMAI GTCTC 2 cut(s) 273, 490
BstMBI GATC 4 cut(s) 835, 925, 936, 1122
BstMWI GCNNNNNNNGC 3 cut(s) 71, 365, 893
BstNI CCWGG 2 cut(s) 177, 401
BstNSI RCATGY 2 cut(s) 735, 905
BstSCI CCNGG 5 cut(s) 120, 175, 399, 625, 928
BstSLI GKGCMC 1 cut(s) 980
BstUI CGCG 2 cut(s) 98, 291
BstV1I GCAGC 5 cut(s) 41, 631, 742, 806, 1019
BstV2I GAAGAC 1 cut(s) 1135
Bsu36I CCTNAGG 1 cut(s) 1188
BsuI GTATCC 1 cut(s) 980
BsuRI GGCC 5 cut(s) 125, 383, 652, 675, 952
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 2 cut(s) 775, 865
BtsIMutI CAGTG 1 cut(s) 705
Cac8I GCNNGC 2 cut(s) 100, 435
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 671
Cfr13I GGNCC 3 cut(s) 44, 578, 665
Csp6I GTAC 4 cut(s) 172, 198, 287, 764
CviQI GTAC 4 cut(s) 172, 198, 287, 764
DdeI CTNAG 5 cut(s) 58, 561, 568, 1188, 1215
DpnI GATC 4 cut(s) 837, 927, 938, 1124
DpnII GATC 4 cut(s) 835, 925, 936, 1122
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 2 cut(s) 123, 381
Eam1104I CTCTTC 2 cut(s) 185, 1274
EarI CTCTTC 2 cut(s) 185, 1274
EciI GGCGGA 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 791
Eco31I GGTCTC 2 cut(s) 273, 490
Eco32I GATATC 1 cut(s) 1003
Eco47I GGWCC 3 cut(s) 44, 578, 665
Eco57I CTGAAG 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 1188
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoO109I RGGNCCY 2 cut(s) 578, 665
EcoRI GAATTC 1 cut(s) 1333
EcoRII CCWGG 2 cut(s) 175, 399
EcoRV GATATC 1 cut(s) 1003
EcoT14I CCWWGG 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 791
ErhI CCWWGG 1 cut(s) 77
FaqI GGGAC 3 cut(s) 651, 733, 1353
FauI CCCGC 1 cut(s) 799
FbaI TGATCA 2 cut(s) 835, 1122
Fnu4HI GCNGC 6 cut(s) 30, 292, 645, 756, 795, 1033
FokI GGATG 2 cut(s) 762, 872
FriOI GRGCYC 1 cut(s) 791
Fsp4HI GCNGC 6 cut(s) 30, 292, 645, 756, 795, 1033
FspBI CTAG 5 cut(s) 492, 507, 573, 690, 744
GlaI GCGC 1 cut(s) 97
GluI GCNGC 6 cut(s) 30, 292, 645, 756, 795, 1033
GsuI CTGGAG 2 cut(s) 381, 422
HaeIII GGCC 5 cut(s) 125, 383, 652, 675, 952
HapII CCGG 7 cut(s) 112, 122, 626, 672, 876, 929, 953
HhaI GCGC 1 cut(s) 98
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HpaII CCGG 7 cut(s) 112, 122, 626, 672, 876, 929, 953
HphI GGTGA 3 cut(s) 152, 353, 1342
Hpy166II GTNNAC 4 cut(s) 397, 634, 907, 978
Hpy188I TCNGA 7 cut(s) 444, 780, 852, 1000, 1127, 1218, 1289
Hpy188III TCNNGA 2 cut(s) 543, 680
Hpy8I GTNNAC 4 cut(s) 397, 634, 907, 978
HpyAV CCTTC 4 cut(s) 466, 515, 606, 686
HpyCH4III ACNGT 3 cut(s) 314, 529, 709
HpyCH4IV ACGT 1 cut(s) 1143
HpyCH4V TGCA 5 cut(s) 29, 758, 887, 978, 1310
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 365, 893
HpyF3I CTNAG 5 cut(s) 58, 561, 568, 1188, 1215
HpySE526I ACGT 1 cut(s) 1143
HspAI GCGC 1 cut(s) 96
KflI GGGWCCC 1 cut(s) 665
Ksp22I TGATCA 2 cut(s) 835, 1122
Kzo9I GATC 4 cut(s) 835, 925, 936, 1122
LmnI GCTCC 5 cut(s) 4, 79, 365, 628, 786
Lsp1109I GCAGC 5 cut(s) 41, 631, 742, 806, 1019
LweI GCATC 1 cut(s) 1245
MaeI CTAG 5 cut(s) 492, 507, 573, 690, 744
MaeII ACGT 1 cut(s) 1143
MaeIII GTNAC 7 cut(s) 226, 308, 829, 964, 1090, 1135, 1378
MalI GATC 4 cut(s) 837, 927, 938, 1124
MboI GATC 4 cut(s) 835, 925, 936, 1122
MboII GAAGA 5 cut(s) 202, 695, 1060, 1140, 1291
MfeI CAATTG 2 cut(s) 48, 888
MhlI GDGCHC 4 cut(s) 104, 550, 791, 980
MlsI TGGCCA 1 cut(s) 383
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 4 cut(s) 404, 433, 467, 639
Mox20I TGGCCA 1 cut(s) 383
MscI TGGCCA 1 cut(s) 383
MseI TTAA 2 cut(s) 1007, 1209
MslI CAYNNNNRTG 4 cut(s) 710, 744, 1023, 1376
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 797
MspI CCGG 7 cut(s) 112, 122, 626, 672, 876, 929, 953
MspR9I CCNGG 5 cut(s) 122, 177, 401, 627, 930
MunI CAATTG 2 cut(s) 48, 888
MvaI CCWGG 2 cut(s) 177, 401
MvnI CGCG 2 cut(s) 98, 291
MwoI GCNNNNNNNGC 3 cut(s) 71, 365, 893
NciI CCSGG 3 cut(s) 122, 627, 930
NdeII GATC 4 cut(s) 835, 925, 936, 1122
NlaIV GGNNCC 5 cut(s) 580, 666, 667, 788, 1185
NmuCI GTSAC 4 cut(s) 226, 308, 964, 1378
NspI RCATGY 2 cut(s) 735, 905
NspV TTCGAA 1 cut(s) 590
PciI ACATGT 1 cut(s) 901
PfeI GAWTC 6 cut(s) 117, 164, 686, 847, 1150, 1284
PfoI TCCNGGA 1 cut(s) 625
PkrI GCNGC 6 cut(s) 31, 293, 646, 757, 796, 1034
PleI GAGTC 4 cut(s) 404, 433, 466, 638
PpsI GAGTC 4 cut(s) 404, 433, 466, 638
PpuMI RGGWCCY 2 cut(s) 578, 665
PscI ACATGT 1 cut(s) 901
Psp5II RGGWCCY 2 cut(s) 578, 665
Psp6I CCWGG 2 cut(s) 175, 399
PspGI CCWGG 2 cut(s) 175, 399
PspN4I GGNNCC 5 cut(s) 580, 666, 667, 788, 1185
PspPI GGNCC 3 cut(s) 44, 578, 665
PspPPI RGGWCCY 2 cut(s) 578, 665
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 4 cut(s) 173, 199, 288, 765
RsaNI GTAC 4 cut(s) 172, 198, 287, 764
RseI CAYNNNNRTG 4 cut(s) 710, 744, 1023, 1376
SaqAI TTAA 2 cut(s) 1007, 1209
SatI GCNGC 6 cut(s) 30, 292, 645, 756, 795, 1033
Sau3AI GATC 4 cut(s) 835, 925, 936, 1122
Sau96I GGNCC 3 cut(s) 44, 578, 665
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 4 cut(s) 404, 433, 467, 639
ScrFI CCNGG 5 cut(s) 122, 177, 401, 627, 930
SduI GDGCHC 4 cut(s) 104, 550, 791, 980
SfaNI GCATC 1 cut(s) 1245
SfuI TTCGAA 1 cut(s) 590
SinI GGWCC 3 cut(s) 44, 578, 665
SmiMI CAYNNNNRTG 4 cut(s) 710, 744, 1023, 1376
SsiI CCGC 3 cut(s) 291, 332, 792
SspMI CTAG 5 cut(s) 492, 507, 573, 690, 744
StyD4I CCNGG 5 cut(s) 120, 175, 399, 625, 928
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 3 cut(s) 314, 529, 709
TaiI ACGT 1 cut(s) 1146
TaqI TCGA 2 cut(s) 590, 1274
TatI WGTACW 1 cut(s) 197
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 6 cut(s) 117, 164, 686, 847, 1150, 1284
Tru1I TTAA 2 cut(s) 1007, 1209
Tru9I TTAA 2 cut(s) 1007, 1209
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 4 cut(s) 226, 308, 964, 1378
TseI GCWGC 5 cut(s) 29, 644, 755, 794, 1032
Tsp45I GTSAC 4 cut(s) 226, 308, 964, 1378
TspDTI ATGAA 3 cut(s) 84, 249, 1067
TspRI CASTG 1 cut(s) 712
VneI GTGCAC 1 cut(s) 976
VpaK11BI GGWCC 3 cut(s) 44, 578, 665
XagI CCTNNNNNAGG 1 cut(s) 404
XapI RAATTY 5 cut(s) 12, 251, 700, 1041, 1333
XceI RCATGY 2 cut(s) 735, 905
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 1168
XspI CTAG 5 cut(s) 492, 507, 573, 690, 744
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.