Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016576

Physical Location & Seq

Genomic Coordinates Forward (+)

49079714 .. 49080970

Gene Structure 1257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG293900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGTGATGGAAAAGTCCTTTATGGAGAATCCATGTACCCAGGAAACCATTTGAAGAGAAGTACTGGAAAAGAGGTTGAAGTTGTTTATGTGACTGATGAAAATACAGGAAGTGAATTTTGCTTCAGGGGGTCTCTCCCAAGAGCAAAAGTACGCGGCAAGATAGTGGTCTGTGACCGTGGTGTCAATGGTAGGGCGGAGAAAGGTGAAGTGGTAAAAGAAGCTGGAGGAGCTGGAATGATTTTGGCCAATACAGAGATGAATAGGGGTTTCAGCCTCAATTACCCCTCCATTTCAGTAACTTTCAAACACGGCATGAGAAGTAAAATGATCAGAAGACGAGTAACAAACGTAGGGAATCCGCATTCCACTTACTTGCTGGACGTAATGGCACCTAAGGAAGTTAGAGTGAAAGTTAAGCCTCAGAGGTTAGTTTTCACAGGCATCAACCAGAGTTTGAGTTATAGGGTATGGTTTATATCGAGGAAGAGAATCAGAAAAGATAACATGAGTTTTGCACAAGGACATTTAGCATGGGTGAATTCTAACAATAGTAGCTTTCACAAGGTCAAAAGTCCCATCTCTGTGACTTGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009653 GO:0009791 GO:0009888 GO:0009897 GO:0009986 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0016787 GO:0017171 GO:0019538 GO:0032501 GO:0032502 GO:0042127 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0071944 GO:0090558 GO:0090626 GO:0090698 GO:0098552 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

199

Amino Acids

22.37

Weight (kDa)

10.34

Isoelectric Point (pI)

26.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	27 - 105	5.6e-12	PA domain
fn3_6	PF17766	93 - 196	4.2e-25	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04110
fragaria_vesca	FvH4_2g20460
malus_domestica	MD05G1188400.v1.1 MD10G1175900.v1.1
prunus_persica	Prupe.8G214900_v2.0.a1
pyrus_communis	pycom10g15150
rosa_chinensis	RchiOBHm_Chr6g0286551
rosa_laevigata	RLG00000012558
rosa_multiflora	Rmu_sc0004628.1_g000013
rosa_roxburghii	Rroxscaffold_7G00182190
rosa_rugosa	Rorug06G0181100
rosa_samantha	Rh6AG293900 Rh6BG297000
rosa_wichuraiana	Rw6G025300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	391
AccII	CGCG	1 cut(s)	156
AciI	CCGC	3 cut(s)	156, 197, 362
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	116, 541
AcuI	CTGAAG	1 cut(s)	109
AfaI	GTAC	3 cut(s)	38, 64, 153
AgsI	TTSAA	3 cut(s)	55, 80, 307
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	3 cut(s)	224, 233, 558
AluI	AGCT	3 cut(s)	224, 233, 558
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	246
ApoI	RAATTY	2 cut(s)	116, 541
AsuHPI	GGTGA	3 cut(s)	17, 218, 550
AxyI	CCTNAGG	1 cut(s)	396
BalI	TGGCCA	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	343
BccI	CCATC	2 cut(s)	2, 587
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	42
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	138
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	40, 178
Bse1I	ACTGG	1 cut(s)	70
Bse21I	CCTNAGG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	40, 178
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	561
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	561
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	248
Bso31I	GGTCTC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	3 cut(s)	156, 197, 362
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	436
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	40, 178
BssMI	GATC	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	50, 482
BstDEI	CTNAG	2 cut(s)	396, 423
BstDSI	CCRYGG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	343
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	178
Csp6I	GTAC	3 cut(s)	37, 63, 152
CviAII	CATG	4 cut(s)	34, 316, 508, 534
CviJI	RGCY	6 cut(s)	224, 233, 248, 276, 421, 558
CviKI_1	RGCY	6 cut(s)	224, 233, 248, 276, 421, 558
CviQI	GTAC	3 cut(s)	37, 63, 152
DdeI	CTNAG	2 cut(s)	396, 423
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	50, 482
EarI	CTCTTC	2 cut(s)	50, 482
EciI	GGCGGA	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	40
FaeI	CATG	4 cut(s)	37, 319, 511, 537
FaiI	YATR	9 cut(s)	24, 35, 90, 317, 465, 472, 479, 509, 535
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	4 cut(s)	33, 315, 507, 533
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	37, 319, 511, 537
HinfI	GANTC	3 cut(s)	29, 358, 492
HphI	GGTGA	3 cut(s)	17, 218, 550
Hpy188I	TCNGA	3 cut(s)	335, 426, 497
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	351, 384
HpyCH4V	TGCA	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	396, 423
HpySE526I	ACGT	2 cut(s)	351, 384
Hsp92II	CATG	4 cut(s)	37, 319, 511, 537
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	230
LweI	GCATC	1 cut(s)	453
MaeII	ACGT	2 cut(s)	351, 384
MaeIII	GTNAC	5 cut(s)	91, 173, 298, 343, 586
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	3 cut(s)	67, 348, 499
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	3 cut(s)	116, 280, 541
MluNI	TGGCCA	1 cut(s)	248
MnlI	CCTC	7 cut(s)	67, 221, 287, 298, 420, 432, 477
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	4 cut(s)	37, 319, 511, 537
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	3 cut(s)	91, 173, 586
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	3 cut(s)	29, 358, 492
PkrI	GCNGC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	393
RsaI	GTAC	3 cut(s)	38, 64, 153
RsaNI	GTAC	3 cut(s)	37, 63, 152
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	1 cut(s)	330
ScaI	AGTACT	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	3 cut(s)	116, 280, 541
SsiI	CCGC	3 cut(s)	156, 197, 362
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	2 cut(s)	354, 387
TaqI	TCGA	1 cut(s)	482
TasI	AATT	3 cut(s)	116, 280, 541
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	29, 358, 492
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	3 cut(s)	91, 173, 586
Tsp45I	GTSAC	3 cut(s)	91, 173, 586
TspDTI	ATGAA	2 cut(s)	114, 275
XapI	RAATTY	2 cut(s)	116, 541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.