AT1G04410

Malate dehydrogenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
1188995 .. 1191458
2464 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04410.1

Sequence Viewer

Length: 999 bp
ATGGCGAAAGAACCAGTTCGTGTGCTCGTTACTGGAGCTGCAGGACAAATCGGATATGCTCTTGTACCTATGATTGCAAGGGGTATCATGCTTGGTGCTGACCAACCTGTTATCCTCCACATGTTGGATATTCCTCCAGCTGCTGAAGCTTTGAACGGTGTTAAGATGGAGTTGATCGATGCTGCTTTCCCTCTTCTTAAAGGTGTTGTTGCTACAACTGATGCCGTTGAGGGATGTACTGGAGTCAATGTTGCTGTTATGGTTGGTGGTTTCCCGAGGAAAGAAGGTATGGAGAGGAAGGATGTGATGTCCAAGAATGTTTCCATCTACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAATTTGCACCATCAATCCCTGAAAAGAACATCTCTTGTTTGACAAGGCTTGACCACAACAGGGCTTTGGGACAGATCTCTGAGAGGTTGAGCGTGCCAGTGTCTGATGTTAAGAACGTGATCATCTGGGGAAACCACTCATCCTCACAGTACCCAGATGTCAACCATGCTAAAGTGCAGACCTCGTCTGGAGAGAAGCCTGTCCGTGAGCTCGTCAAGGACGATGCATGGTTGGACGGAGAATTTATCTCTACAGTTCAACAACGTGGAGCTGCAATCATCAAGGCGAGGAAGTTGTCTAGTGCGCTCTCTGCTGCTAGCTCTGCTTGTGACCACATCCGTGACTGGGTCCTTGGAACTCCAGAGGGTACGTTCGTTTCCATGGGAGTATACTCCGATGGCTCTTACAGCGTTCCATCAGGACTTATCTACTCCTTCCCTGTAACTTGTCGCAATGGAGACTGGAGTATTGTCCAAGGCCTTCCGATTGATGAAGTATCAAGGAAGAAGATGGATTTGACTGCAGAGGAGCTCAAGGAAGAGAAGGACTTGGCGTACTCATGCCTCTCTTAA

Protein Analysis

332

Amino Acids

35.57

Weight (kDa)

6.11

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ldh_1_N PF00056 6 - 153 9.7e-32 lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C PF02866 157 - 326 1.6e-45 lactate/malate dehydrogenase, alpha/beta C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04410 AT5G43330
fragaria_vesca FvH4_4g03630
malus_domestica MD13G1214000.v1.1 MD16G1219000.v1.1
prunus_persica Prupe.1G039300_v2.0.a1 Prupe.1G039300_v2.0.a1
pyrus_communis pycom13g18720 pycom16g18250
rosa_chinensis RchiOBHm_Chr4g0393011
rosa_laevigata RLG00000009775
rosa_multiflora Rmu_sc0008339.1_g000014
rosa_roxburghii Rroxscaffold_5G00338110
rosa_rugosa Rorug04G0003000
rosa_samantha Rh4BG041300 Rh4CG048900
rosa_wichuraiana Rw4G003570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 365
AccI GTMKAC 1 cut(s) 816
AciI CCGC 1 cut(s) 363
AclWI GGATC 1 cut(s) 412
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 2 cut(s) 428, 668
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 5 cut(s) 66, 238, 578, 796, 983
AfiI CCNNNNNNNGG 3 cut(s) 124, 487, 772
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 2 cut(s) 154, 686
AleI CACNNNNGTG 1 cut(s) 765
AluBI AGCT 7 cut(s) 38, 140, 149, 637, 698, 747, 958
AluI AGCT 7 cut(s) 38, 140, 149, 637, 698, 747, 958
Alw21I GWGCWC 3 cut(s) 27, 639, 960
Alw26I GTCTC 2 cut(s) 339, 879
AlwI GGATC 1 cut(s) 412
AlwNI CAGNNNCTG 2 cut(s) 143, 530
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 2 cut(s) 390, 904
ApeKI GCWGC 7 cut(s) 38, 140, 182, 341, 344, 698, 740
ApoI RAATTY 2 cut(s) 428, 668
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 1 cut(s) 775
AsuC2I CCSGG 1 cut(s) 398
AsuNHI GCTAGC 1 cut(s) 743
AvaI CYCGRG 1 cut(s) 274
AvaII GGWCC 1 cut(s) 775
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BalI TGGCCA 1 cut(s) 392
BanII GRGCYC 2 cut(s) 639, 960
Bbv12I GWGCWC 3 cut(s) 27, 639, 960
BbvI GCAGC 7 cut(s) 25, 127, 169, 328, 331, 685, 727
BccI CCATC 6 cut(s) 160, 332, 445, 818, 850, 931
BceAI ACGGC 1 cut(s) 209
BclI TGATCA 1 cut(s) 546
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 2 cut(s) 339, 879
BfaI CTAG 2 cut(s) 726, 744
BfmI CTRYAG 3 cut(s) 39, 678, 948
BglI GCCNNNNNGGC 1 cut(s) 398
BglII AGATCT 1 cut(s) 501
BisI GCNGC 8 cut(s) 39, 141, 183, 342, 345, 363, 699, 741
BlsI GCNGC 8 cut(s) 40, 142, 184, 343, 346, 364, 700, 742
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 775
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 775
BmiI GGNNCC 1 cut(s) 776
BmrFI CCNGG 1 cut(s) 398
BmrI ACTGGG 1 cut(s) 781
BmsI GCATC 3 cut(s) 169, 211, 640
BmtI GCTAGC 1 cut(s) 747
BmuI ACTGGG 1 cut(s) 781
BpmI CTGGAG 6 cut(s) 54, 120, 261, 636, 771, 910
BpuEI CTTGAG 2 cut(s) 407, 944
BpuMI CCSGG 1 cut(s) 398
Bsa29I ATCGAT 1 cut(s) 177
BsaJI CCNNGG 5 cut(s) 275, 348, 778, 807, 901
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 487, 772
Bse1I ACTGG 6 cut(s) 14, 37, 244, 524, 776, 893
Bse3DI GCAATG 1 cut(s) 886
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 5 cut(s) 275, 348, 778, 807, 901
BseGI GGATG 4 cut(s) 239, 307, 566, 762
BseLI CCNNNNNNNGG 3 cut(s) 124, 487, 772
BseMI GCAATG 1 cut(s) 886
BseMII CTCAG 2 cut(s) 350, 498
BseNI ACTGG 6 cut(s) 14, 37, 244, 524, 776, 893
BseRI GAGGAG 1 cut(s) 968
BseXI GCAGC 7 cut(s) 25, 127, 169, 328, 331, 685, 727
BsgI GTGCAG 1 cut(s) 623
BshFI GGCC 2 cut(s) 392, 906
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 3 cut(s) 27, 639, 960
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 398
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 3 cut(s) 124, 487, 772
BsmAI GTCTC 2 cut(s) 339, 879
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 2 cut(s) 392, 906
BsoBI CYCGRG 1 cut(s) 274
Bsp1286I GDGCHC 3 cut(s) 27, 639, 960
Bsp143I GATC 4 cut(s) 174, 417, 501, 546
Bsp19I CCATGG 1 cut(s) 807
BspACI CCGC 1 cut(s) 363
BspANI GGCC 2 cut(s) 392, 906
BspCNI CTCAG 2 cut(s) 349, 499
BspDI ATCGAT 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 776
BspMAI CTGCAG 2 cut(s) 43, 952
BspOI GCTAGC 1 cut(s) 747
BspPI GGATC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 886
BsrI ACTGG 6 cut(s) 14, 37, 244, 524, 776, 893
BssECI CCNNGG 5 cut(s) 275, 348, 778, 807, 901
BssMI GATC 4 cut(s) 174, 417, 501, 546
BssNAI GTATAC 1 cut(s) 817
BssT1I CCWWGG 4 cut(s) 348, 778, 807, 901
Bst1107I GTATAC 1 cut(s) 817
Bst4CI ACNGT 3 cut(s) 158, 576, 682
Bst6I CTCTTC 2 cut(s) 198, 960
BstC8I GCNNGC 3 cut(s) 360, 521, 745
BstDEI CTNAG 2 cut(s) 336, 507
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 4 cut(s) 239, 307, 566, 762
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 4 cut(s) 177, 420, 504, 549
BstMAI GTCTC 2 cut(s) 339, 879
BstMBI GATC 4 cut(s) 174, 417, 501, 546
BstMWI GCNNNNNNNGC 5 cut(s) 146, 398, 737, 749, 834
BstNSI RCATGY 2 cut(s) 124, 362
BstSCI CCNGG 1 cut(s) 396
BstSFI CTRYAG 3 cut(s) 39, 678, 948
BstV1I GCAGC 7 cut(s) 25, 127, 169, 328, 331, 685, 727
BstX2I RGATCY 1 cut(s) 501
BstYI RGATCY 1 cut(s) 501
BstZ17I GTATAC 1 cut(s) 817
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 2 cut(s) 392, 906
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 807
BtsCI GGATG 4 cut(s) 239, 307, 566, 762
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 3 cut(s) 360, 521, 745
CaiI CAGNNNCTG 2 cut(s) 143, 530
CfoI GCGC 1 cut(s) 733
Cfr13I GGNCC 1 cut(s) 775
ClaI ATCGAT 1 cut(s) 177
Csp6I GTAC 5 cut(s) 65, 237, 577, 795, 982
CviAII CATG 7 cut(s) 88, 121, 359, 593, 654, 808, 987
CviQI GTAC 5 cut(s) 65, 237, 577, 795, 982
DdeI CTNAG 2 cut(s) 336, 507
DpnI GATC 4 cut(s) 176, 419, 503, 548
DpnII GATC 4 cut(s) 174, 417, 501, 546
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 198, 960
EarI CTCTTC 2 cut(s) 198, 960
Ecl136II GAGCTC 2 cut(s) 637, 958
Eco130I CCWWGG 4 cut(s) 348, 778, 807, 901
Eco147I AGGCCT 1 cut(s) 906
Eco24I GRGCYC 2 cut(s) 639, 960
Eco47I GGWCC 1 cut(s) 775
Eco53kI GAGCTC 2 cut(s) 637, 958
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 274
EcoICRI GAGCTC 2 cut(s) 637, 958
EcoO109I RGGNCCY 1 cut(s) 775
EcoT14I CCWWGG 4 cut(s) 348, 778, 807, 901
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 2 cut(s) 639, 960
ErhI CCWWGG 4 cut(s) 348, 778, 807, 901
FaeI CATG 7 cut(s) 91, 124, 362, 596, 657, 811, 990
FaqI GGGAC 1 cut(s) 510
FatI CATG 7 cut(s) 87, 120, 358, 592, 653, 807, 986
FbaI TGATCA 1 cut(s) 546
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 8 cut(s) 39, 141, 183, 342, 345, 363, 699, 741
FokI GGATG 4 cut(s) 246, 314, 553, 749
FriOI GRGCYC 2 cut(s) 639, 960
Fsp4HI GCNGC 8 cut(s) 39, 141, 183, 342, 345, 363, 699, 741
FspBI CTAG 2 cut(s) 726, 744
GlaI GCGC 1 cut(s) 732
GluI GCNGC 8 cut(s) 39, 141, 183, 342, 345, 363, 699, 741
GsuI CTGGAG 6 cut(s) 54, 120, 261, 636, 771, 910
HaeIII GGCC 2 cut(s) 392, 906
HapII CCGG 1 cut(s) 398
HhaI GCGC 1 cut(s) 733
Hin1II CATG 7 cut(s) 91, 124, 362, 596, 657, 811, 990
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 1 cut(s) 243
HpaII CCGG 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 589, 817
Hpy188I TCNGA 5 cut(s) 53, 508, 532, 823, 912
Hpy188III TCNNGA 4 cut(s) 274, 615, 788, 846
Hpy8I GTNNAC 2 cut(s) 589, 817
HpyAV CCTTC 5 cut(s) 278, 292, 871, 917, 964
HpyCH4III ACNGT 3 cut(s) 158, 576, 682
HpyCH4IV ACGT 3 cut(s) 543, 691, 797
HpyCH4V TGCA 8 cut(s) 41, 77, 375, 434, 604, 653, 701, 950
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 398, 737, 749, 834
HpyF3I CTNAG 2 cut(s) 336, 507
HpySE526I ACGT 3 cut(s) 543, 691, 797
Hsp92II CATG 7 cut(s) 91, 124, 362, 596, 657, 811, 990
HspAI GCGC 1 cut(s) 731
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 4 cut(s) 174, 417, 501, 546
LmnI GCTCC 4 cut(s) 35, 370, 695, 955
Lsp1109I GCAGC 7 cut(s) 25, 127, 169, 328, 331, 685, 727
LweI GCATC 3 cut(s) 169, 211, 640
MaeI CTAG 2 cut(s) 726, 744
MaeII ACGT 3 cut(s) 543, 691, 797
MaeIII GTNAC 4 cut(s) 28, 755, 767, 868
MalI GATC 4 cut(s) 176, 419, 503, 548
MbiI CCGCTC 1 cut(s) 365
MboI GATC 4 cut(s) 174, 417, 501, 546
MboII GAAGA 4 cut(s) 185, 943, 946, 977
MflI RGATCY 1 cut(s) 501
MhlI GDGCHC 3 cut(s) 27, 639, 960
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 2 cut(s) 428, 668
MluNI TGGCCA 1 cut(s) 392
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 2 cut(s) 105, 639
Mox20I TGGCCA 1 cut(s) 392
Mph1103I ATGCAT 1 cut(s) 655
MroXI GAANNNNTTC 1 cut(s) 15
MscI TGGCCA 1 cut(s) 392
MseI TTAA 4 cut(s) 162, 198, 537, 997
MslI CAYNNNNRTG 1 cut(s) 765
Msp20I TGGCCA 1 cut(s) 392
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 398
MwoI GCNNNNNNNGC 5 cut(s) 146, 398, 737, 749, 834
NciI CCSGG 1 cut(s) 398
NcoI CCATGG 1 cut(s) 807
NdeII GATC 4 cut(s) 174, 417, 501, 546
NheI GCTAGC 1 cut(s) 743
NlaIII CATG 7 cut(s) 91, 124, 362, 596, 657, 811, 990
NlaIV GGNNCC 1 cut(s) 776
NmuCI GTSAC 2 cut(s) 755, 767
NsiI ATGCAT 1 cut(s) 655
NspI RCATGY 2 cut(s) 124, 362
OliI CACNNNNGTG 1 cut(s) 765
PaeI GCATGC 1 cut(s) 362
PceI AGGCCT 1 cut(s) 906
PciI ACATGT 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PdmI GAANNNNTTC 1 cut(s) 15
PflFI GACNNNGTC 2 cut(s) 610, 773
PflMI CCANNNNNTGG 1 cut(s) 124
PkrI GCNGC 8 cut(s) 40, 142, 184, 343, 346, 364, 700, 742
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 775
PscI ACATGT 1 cut(s) 120
Psp124BI GAGCTC 2 cut(s) 639, 960
Psp5II RGGWCCY 1 cut(s) 775
PspN4I GGNNCC 1 cut(s) 776
PspPI GGNCC 1 cut(s) 775
PspPPI RGGWCCY 1 cut(s) 775
PstI CTGCAG 2 cut(s) 43, 952
PstNI CAGNNNCTG 2 cut(s) 143, 530
PsuI RGATCY 1 cut(s) 501
PsyI GACNNNGTC 2 cut(s) 610, 773
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 5 cut(s) 66, 238, 578, 796, 983
RsaNI GTAC 5 cut(s) 65, 237, 577, 795, 982
RseI CAYNNNNRTG 1 cut(s) 765
SacI GAGCTC 2 cut(s) 639, 960
SaqAI TTAA 4 cut(s) 162, 198, 537, 997
SatI GCNGC 8 cut(s) 39, 141, 183, 342, 345, 363, 699, 741
Sau3AI GATC 4 cut(s) 174, 417, 501, 546
Sau96I GGNCC 1 cut(s) 775
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 398
SduI GDGCHC 3 cut(s) 27, 639, 960
SfaNI GCATC 3 cut(s) 169, 211, 640
SfcI CTRYAG 3 cut(s) 39, 678, 948
SinI GGWCC 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 2 cut(s) 422, 959
SmoI CTYRAG 2 cut(s) 422, 959
SphI GCATGC 1 cut(s) 362
Sse9I AATT 2 cut(s) 428, 668
SseBI AGGCCT 1 cut(s) 906
SsiI CCGC 1 cut(s) 363
SspMI CTAG 2 cut(s) 726, 744
SstI GAGCTC 2 cut(s) 639, 960
StuI AGGCCT 1 cut(s) 906
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 4 cut(s) 348, 778, 807, 901
TaaI ACNGT 3 cut(s) 158, 576, 682
TaiI ACGT 3 cut(s) 546, 694, 800
TaqI TCGA 1 cut(s) 177
TasI AATT 2 cut(s) 428, 668
TatI WGTACW 1 cut(s) 236
TauI GCSGC 1 cut(s) 365
Tru1I TTAA 4 cut(s) 162, 198, 537, 997
Tru9I TTAA 4 cut(s) 162, 198, 537, 997
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 2 cut(s) 755, 767
TseI GCWGC 7 cut(s) 38, 140, 182, 341, 344, 698, 740
Tsp45I GTSAC 2 cut(s) 755, 767
TspDTI ATGAA 1 cut(s) 933
TspGWI ACGGA 3 cut(s) 620, 678, 755
TspRI CASTG 1 cut(s) 531
Tth111I GACNNNGTC 2 cut(s) 610, 773
Van91I CCANNNNNTGG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 775
XapI RAATTY 2 cut(s) 428, 668
XceI RCATGY 2 cut(s) 124, 362
XmiI GTMKAC 1 cut(s) 816
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 2 cut(s) 726, 744
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.