Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013912

Physical Location & Seq

Genomic Coordinates Reverse (-)

2802783 .. 2805546

Gene Structure 2764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G039300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGAAAGGACCAGTTCGCGTCCTTGTTACTGGAGCCGCAGGACAAATTGGATATGCGCTTGTACCAATGATCGCAAGGGGAGTGATGCTGGGAGCTGACCAGCCGGTGATTCTTCACCTGCTTGATATCCCACCAGCTGCTGAGGCTTTGAATGGTGTCAAGATGGAGTTGGTCGATGCTGCTTTCCCTCTTCTTAAAGGTGTTGTTGCTACAACTGATGTTGTGGAGGCATGCACTGGAGTCAACATTGCCGTTATGGTTGGTGGCTTCCCAAGGAAGGAAGGCATGGAAAGAAAAGATGTCATGTCAAAGAACGTTTCTATTTACAAGTCACAAGCTTCTGCTCTGGAGAAGCACGCAGCTGCTAACTGCAAGGTTTTGGTTGTTGCTAATCCTGCAAACACCAATGCACTGATCTTGAAGGAATTTGCACCATCAATTCCTGAGAAAAACATAACCTGTTTGACTAGACTGGATCATAACAGGGCTTTGGGCCAGGTTTCAGAGAGATTGAACGTTCAAGTTTCTGATGTTAAAAATGTTATTATCTGGGGAAACCACTCATCATCACAGTATCCTGATGTCAACCATGCAACTGTCAAGACACCTTCTGGAGAGAAAGCTGTTCGTGAGCTTGTTGCTGATGATGCATGGTTGACCGGAGAATTCATTACCACTGTTCAACAACGTGGTGCTGCAATCATCAAGGCTCGTAAGCTGTCCAGTGCATTATCTGCTGCTAGCTCTGCTTGTGATCACATTCGTGATTGGGTACTTGGAACCCCCGAGGGCACCTGGGTTTCCATGGGTGTGTACTCTGATGGCTCATACAATGTTCCTTCTGGTCTCATTTACTCATTCCCAGTCACTTGCCAAAATGGGGAGTGGAAGATTGTTCAAGGGCTCTCTATTGACGAATTCTCTAGGAAGAAGTTGGACGCAACCGCAGACGAGCTCAGTGAGGAAAAGGCTTTGGCATACTCTTGCCTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

333

Amino Acids

35.43

Weight (kDa)

6.32

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04410 AT5G43330
fragaria_vesca	FvH4_4g03630
malus_domestica	MD13G1214000.v1.1 MD16G1219000.v1.1
prunus_persica	Prupe.1G039300_v2.0.a1 Prupe.1G039300_v2.0.a1
pyrus_communis	pycom13g18720 pycom16g18250
rosa_chinensis	RchiOBHm_Chr4g0393011
rosa_laevigata	RLG00000009775
rosa_multiflora	Rmu_sc0008339.1_g000014
rosa_roxburghii	Rroxscaffold_5G00338110
rosa_rugosa	Rorug04G0003000
rosa_samantha	Rh4BG041300 Rh4CG048900
rosa_wichuraiana	Rw4G003570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	129
Acc36I	ACCTGC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	794
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	39, 948
AclI	AACGTT	2 cut(s)	318, 519
AclWI	GGATC	1 cut(s)	486
AcsI	RAATTY	3 cut(s)	428, 668, 920
AfaI	GTAC	3 cut(s)	66, 777, 818
AfiI	CCNNNNNNNGG	2 cut(s)	280, 883
AgsI	TTSAA	6 cut(s)	154, 424, 517, 524, 686, 902
AjnI	CCWGG	2 cut(s)	498, 797
AleI	CACNNNNGTG	1 cut(s)	765
AluBI	AGCT	9 cut(s)	98, 140, 341, 365, 626, 637, 721, 747, 958
AluI	AGCT	9 cut(s)	98, 140, 341, 365, 626, 637, 721, 747, 958
Alw21I	GWGCWC	1 cut(s)	960
Alw26I	GTCTC	1 cut(s)	854
AlwI	GGATC	1 cut(s)	486
AlwNI	CAGNNNCTG	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	788
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	6 cut(s)	140, 182, 362, 365, 698, 740
ApoI	RAATTY	3 cut(s)	428, 668, 920
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	11, 496
AsuHPI	GGTGA	2 cut(s)	110, 121
AsuNHI	GCTAGC	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	797
BanI	GGYRCC	1 cut(s)	794
BanII	GRGCYC	2 cut(s)	909, 960
Bbv12I	GWGCWC	1 cut(s)	960
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	6 cut(s)	127, 169, 352, 374, 685, 727
BccI	CCATC	3 cut(s)	160, 445, 818
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	2 cut(s)	500, 799
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	1 cut(s)	757
BcoDI	GTCTC	1 cut(s)	854
BfaI	CTAG	3 cut(s)	471, 744, 927
BfuAI	ACCTGC	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	7 cut(s)	39, 141, 183, 363, 366, 699, 741
BlsI	GCNGC	7 cut(s)	40, 142, 184, 364, 367, 700, 742
Bme1390I	CCNGG	2 cut(s)	500, 799
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	788
BmgT120I	GGNCC	2 cut(s)	11, 496
BmiI	GGNNCC	3 cut(s)	37, 784, 796
BmrFI	CCNGG	2 cut(s)	500, 799
BmrI	ACTGGG	1 cut(s)	860
BmsI	GCATC	3 cut(s)	78, 169, 640
BmtI	GCTAGC	1 cut(s)	747
BmuI	ACTGGG	1 cut(s)	860
BpmI	CTGGAG	4 cut(s)	54, 261, 371, 636
Bpu10I	CCTNAGC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	4 cut(s)	275, 789, 798, 807
BsaWI	WCCGGW	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 883
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	6 cut(s)	14, 37, 244, 480, 726, 866
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	500, 799
BseDI	CCNNGG	4 cut(s)	275, 789, 798, 807
BseLI	CCNNNNNNNGG	2 cut(s)	280, 883
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	3 cut(s)	135, 438, 973
BseNI	ACTGG	6 cut(s)	14, 37, 244, 480, 726, 866
BseSI	GKGCMC	1 cut(s)	797
BseXI	GCAGC	6 cut(s)	127, 169, 352, 374, 685, 727
BseYI	CCCAGC	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	498
BshNI	GGYRCC	1 cut(s)	794
BsiHKAI	GWGCWC	1 cut(s)	960
BsiHKCI	CYCGRG	1 cut(s)	788
BsiSI	CCGG	2 cut(s)	107, 663
BslI	CCNNNNNNNGG	2 cut(s)	280, 883
BsmAI	GTCTC	1 cut(s)	854
BsnI	GGCC	1 cut(s)	498
Bso31I	GGTCTC	1 cut(s)	854
BsoBI	CYCGRG	1 cut(s)	788
Bsp1286I	GDGCHC	3 cut(s)	797, 909, 960
Bsp143I	GATC	4 cut(s)	72, 417, 478, 757
Bsp19I	CCATGG	1 cut(s)	807
BspACI	CCGC	2 cut(s)	39, 948
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	3 cut(s)	136, 439, 972
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	3 cut(s)	37, 784, 796
BspMI	ACCTGC	1 cut(s)	129
BspOI	GCTAGC	1 cut(s)	747
BspPI	GGATC	1 cut(s)	486
BspT107I	GGYRCC	1 cut(s)	794
BspTNI	GGTCTC	1 cut(s)	854
BsrDI	GCAATG	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	6 cut(s)	14, 37, 244, 480, 726, 866
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	4 cut(s)	275, 789, 798, 807
BssMI	GATC	4 cut(s)	72, 417, 478, 757
BssT1I	CCWWGG	2 cut(s)	275, 807
Bst2UI	CCWGG	2 cut(s)	500, 799
Bst4CI	ACNGT	3 cut(s)	576, 601, 682
Bst6I	CTCTTC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	3 cut(s)	235, 360, 745
BstDEI	CTNAG	3 cut(s)	144, 447, 959
BstDSI	CCRYGG	1 cut(s)	807
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	4 cut(s)	75, 420, 481, 760
BstMAI	GTCTC	1 cut(s)	854
BstMBI	GATC	4 cut(s)	72, 417, 478, 757
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 398, 650, 737, 749
BstNI	CCWGG	2 cut(s)	500, 799
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	2 cut(s)	498, 797
BstSLI	GKGCMC	1 cut(s)	797
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	6 cut(s)	127, 169, 352, 374, 685, 727
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	807
BtsIMutI	CAGTG	5 cut(s)	237, 413, 678, 733, 967
BveI	ACCTGC	1 cut(s)	129
Cac8I	GCNNGC	3 cut(s)	235, 360, 745
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	11, 496
CseI	GACGC	2 cut(s)	10, 950
Csp6I	GTAC	3 cut(s)	65, 776, 817
CviAII	CATG	6 cut(s)	234, 289, 307, 593, 654, 808
CviQI	GTAC	3 cut(s)	65, 776, 817
DdeI	CTNAG	3 cut(s)	144, 447, 959
DpnI	GATC	4 cut(s)	74, 419, 480, 759
DpnII	GATC	4 cut(s)	72, 417, 478, 757
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	958
Eco130I	CCWWGG	2 cut(s)	275, 807
Eco24I	GRGCYC	2 cut(s)	909, 960
Eco31I	GGTCTC	1 cut(s)	854
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	958
Eco88I	CYCGRG	1 cut(s)	788
EcoICRI	GAGCTC	1 cut(s)	958
EcoRI	GAATTC	2 cut(s)	668, 920
EcoRII	CCWGG	2 cut(s)	498, 797
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	275, 807
EcoT22I	ATGCAT	1 cut(s)	655
EcoT38I	GRGCYC	2 cut(s)	909, 960
ErhI	CCWWGG	2 cut(s)	275, 807
FaeI	CATG	6 cut(s)	237, 292, 310, 596, 657, 811
FatI	CATG	6 cut(s)	233, 288, 306, 592, 653, 807
FbaI	TGATCA	1 cut(s)	757
Fnu4HI	GCNGC	7 cut(s)	39, 141, 183, 363, 366, 699, 741
FriOI	GRGCYC	2 cut(s)	909, 960
Fsp4HI	GCNGC	7 cut(s)	39, 141, 183, 363, 366, 699, 741
FspBI	CTAG	3 cut(s)	471, 744, 927
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	7 cut(s)	39, 141, 183, 363, 366, 699, 741
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	4 cut(s)	54, 261, 371, 636
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	2 cut(s)	107, 663
HgaI	GACGC	2 cut(s)	10, 950
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	6 cut(s)	237, 292, 310, 596, 657, 811
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	3 cut(s)	247, 589, 660
HindII	GTYRAC	3 cut(s)	247, 589, 660
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	2 cut(s)	112, 243
HpaII	CCGG	2 cut(s)	107, 663
HphI	GGTGA	2 cut(s)	110, 121
Hpy166II	GTNNAC	4 cut(s)	247, 589, 660, 817
Hpy188I	TCNGA	3 cut(s)	508, 532, 823
Hpy8I	GTNNAC	4 cut(s)	247, 589, 660, 817
HpyAV	CCTTC	5 cut(s)	274, 278, 418, 621, 852
HpyCH4III	ACNGT	3 cut(s)	576, 601, 682
HpyCH4IV	ACGT	3 cut(s)	318, 519, 691
HpyCH4V	TGCA	9 cut(s)	237, 375, 401, 413, 434, 596, 653, 701, 731
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 398, 650, 737, 749
HpyF3I	CTNAG	3 cut(s)	144, 447, 959
HpySE526I	ACGT	3 cut(s)	318, 519, 691
Hsp92II	CATG	6 cut(s)	237, 292, 310, 596, 657, 811
HspAI	GCGC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	4 cut(s)	72, 417, 478, 757
LmnI	GCTCC	2 cut(s)	35, 95
Lsp1109I	GCAGC	6 cut(s)	127, 169, 352, 374, 685, 727
LweI	GCATC	3 cut(s)	78, 169, 640
MaeI	CTAG	3 cut(s)	471, 744, 927
MaeII	ACGT	3 cut(s)	318, 519, 691
MaeIII	GTNAC	3 cut(s)	28, 333, 868
MalI	GATC	4 cut(s)	74, 419, 480, 759
MboI	GATC	4 cut(s)	72, 417, 478, 757
MboII	GAAGA	4 cut(s)	107, 185, 904, 943
MhlI	GDGCHC	3 cut(s)	797, 909, 960
MluCI	AATT	5 cut(s)	48, 428, 441, 668, 920
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	918
MnlI	CCTC	5 cut(s)	139, 201, 223, 784, 958
Mph1103I	ATGCAT	1 cut(s)	655
MseI	TTAA	2 cut(s)	198, 537
MslI	CAYNNNNRTG	2 cut(s)	765, 812
MspA1I	CMGCKG	2 cut(s)	140, 365
MspI	CCGG	2 cut(s)	107, 663
MspR9I	CCNGG	2 cut(s)	500, 799
MvaI	CCWGG	2 cut(s)	500, 799
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	5 cut(s)	146, 398, 650, 737, 749
NcoI	CCATGG	1 cut(s)	807
NdeII	GATC	4 cut(s)	72, 417, 478, 757
NheI	GCTAGC	1 cut(s)	743
NlaIII	CATG	6 cut(s)	237, 292, 310, 596, 657, 811
NlaIV	GGNNCC	3 cut(s)	37, 784, 796
NmuCI	GTSAC	2 cut(s)	333, 868
NsiI	ATGCAT	1 cut(s)	655
NspI	RCATGY	1 cut(s)	237
OliI	CACNNNNGTG	1 cut(s)	765
PaeI	GCATGC	1 cut(s)	237
PaqCI	CACCTGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	7 cut(s)	40, 142, 184, 364, 367, 700, 742
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	960
Psp1406I	AACGTT	2 cut(s)	318, 519
Psp6I	CCWGG	2 cut(s)	498, 797
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	2 cut(s)	498, 797
PspN4I	GGNNCC	3 cut(s)	37, 784, 796
PspPI	GGNCC	2 cut(s)	11, 496
PstNI	CAGNNNCTG	1 cut(s)	143
PvuII	CAGCTG	2 cut(s)	140, 365
RsaI	GTAC	3 cut(s)	66, 777, 818
RsaNI	GTAC	3 cut(s)	65, 776, 817
RseI	CAYNNNNRTG	2 cut(s)	765, 812
SacI	GAGCTC	1 cut(s)	960
SaqAI	TTAA	2 cut(s)	198, 537
SatI	GCNGC	7 cut(s)	39, 141, 183, 363, 366, 699, 741
Sau3AI	GATC	4 cut(s)	72, 417, 478, 757
Sau96I	GGNCC	2 cut(s)	11, 496
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	2 cut(s)	500, 799
SduI	GDGCHC	3 cut(s)	797, 909, 960
SfaNI	GCATC	3 cut(s)	78, 169, 640
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	2 cut(s)	765, 812
SphI	GCATGC	1 cut(s)	237
Sse9I	AATT	5 cut(s)	48, 428, 441, 668, 920
SsiI	CCGC	2 cut(s)	39, 948
SspMI	CTAG	3 cut(s)	471, 744, 927
SstI	GAGCTC	1 cut(s)	960
StyD4I	CCNGG	2 cut(s)	498, 797
StyI	CCWWGG	2 cut(s)	275, 807
TaaI	ACNGT	3 cut(s)	576, 601, 682
TaiI	ACGT	3 cut(s)	321, 522, 694
TaqI	TCGA	1 cut(s)	177
TasI	AATT	5 cut(s)	48, 428, 441, 668, 920
TatI	WGTACW	1 cut(s)	816
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	198, 537
Tru9I	TTAA	2 cut(s)	198, 537
TscAI	CASTG	5 cut(s)	244, 420, 685, 733, 967
TseFI	GTSAC	2 cut(s)	333, 868
TseI	GCWGC	6 cut(s)	140, 182, 362, 365, 698, 740
Tsp45I	GTSAC	2 cut(s)	333, 868
TspDTI	ATGAA	1 cut(s)	661
TspRI	CASTG	5 cut(s)	244, 420, 685, 733, 967
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	3 cut(s)	428, 668, 920
XceI	RCATGY	1 cut(s)	237
XspI	CTAG	3 cut(s)	471, 744, 927
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.