Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013912

Physical Location & Seq

Genomic Coordinates Reverse (-)

3241942 .. 3244895

Gene Structure 2954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCCAAAGAACCAGTTCGCGTTCTCGTTACCGGAGCCGCAGGTCAAATCGGATATGCTCTTGTACCTATGATCGCAAGGGGAGTGATGCTCGGAGCCGACCAGCCCGTGATCCTTCACCTTCTTGATATCGAATTCGCTGCTGAGGCATTGAAAGGTGTCAAGATGGAGTTGATCGATGCTGCCTTCCCGCTCCTTAAAGGTGTTGTTGCTACAACTGATGTTGTGGAGGCATGCACCGGAGTTAACATCGCAGTCATGGTTGGTGGCTTCCCAAGGAAGGAGGGCATGGAAAGGAAGGATGTCATGTCAAAGAATGTTTCTATCTACAAGTCCCAGGCTTCTGCGCTAGAGAAGTATGCAGCTGCTAACTGCAAGGTTTTGGTTGTTGCCAATCCTGCAAACACCAACGCTTTGATCTTGAAGGAATTTGCACCATCAATCCCTGAGAAAAACATATCTTGCCTAACTAGACTGGACCATAACAGGGCATTAGGCCAGATTTCAGAGAGATTGAACGTTCAAGTTTCTGATGTGAAAAATGTCATTATCTGGGGAAACCACTCATCATCTCAGTATCCTGATGTCAACCATGCAACTGTCAAGACACCATCTGGAGAGAAACCCGTCCGTGAGCTTGTTGCTGATGATGCTTGGTTGAATGGAGAATTCATTGCCACTGTTCAACAACGGGGTGCTGCAATTATCAAGGCCCGAAAGCTGTCCAGTGCGTTGTCAGCTGCTAGTTCTGCTTGTGACCACATCCGGGATTGGGTACTTGGAACCCCAGAGGGTACTTGGGTTTCCATGGGTGTGTACTCTGATGGCTCATACGGTGTACCAGCTGGTCTCATTTACTCATTCCCTGTCACTTGTTGTAATGGAGATTGGAAGATTGTTCAAGGACTTCCTATTGATGAGTTCTCCAGGAAGAAGATGGATGCAACTGCCGATGAGCTTTCTGAGGAGAAGGCCTTGGCATACACTTGCATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

333

Amino Acids

35.6

Weight (kDa)

6.01

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	6 - 153	8.6e-32	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	157 - 325	9.6e-47	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04410 AT5G43330
fragaria_vesca	FvH4_4g03630
malus_domestica	MD13G1214000.v1.1 MD16G1219000.v1.1
prunus_persica	Prupe.1G039300_v2.0.a1 Prupe.1G039300_v2.0.a1
pyrus_communis	pycom13g18720 pycom16g18250
rosa_chinensis	RchiOBHm_Chr4g0393011
rosa_laevigata	RLG00000009775
rosa_multiflora	Rmu_sc0008339.1_g000014
rosa_roxburghii	Rroxscaffold_5G00338110
rosa_rugosa	Rorug04G0003000
rosa_samantha	Rh4BG041300 Rh4CG048900
rosa_wichuraiana	Rw4G003570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	193
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	39, 191
AclI	AACGTT	1 cut(s)	519
AclWI	GGATC	1 cut(s)	106
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	134, 428, 668
AfaI	GTAC	5 cut(s)	66, 777, 796, 818, 840
AfiI	CCNNNNNNNGG	4 cut(s)	280, 487, 766, 772
AgsI	TTSAA	7 cut(s)	154, 424, 517, 524, 661, 686, 902
AjnI	CCWGG	2 cut(s)	336, 926
AluBI	AGCT	6 cut(s)	365, 637, 721, 740, 845, 958
AluI	AGCT	6 cut(s)	365, 637, 721, 740, 845, 958
Alw26I	GTCTC	1 cut(s)	854
AlwI	GGATC	1 cut(s)	106
AoxI	GGCC	4 cut(s)	3, 496, 711, 972
ApeKI	GCWGC	6 cut(s)	140, 182, 362, 365, 698, 740
ApoI	RAATTY	3 cut(s)	134, 428, 668
Asp700I	GAANNNNTTC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	478, 712
AsuC2I	CCSGG	1 cut(s)	767
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	478
BaeI	ACNNNNGTAYC	2 cut(s)	786, 819
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	6 cut(s)	127, 169, 352, 374, 685, 727
BccI	CCATC	5 cut(s)	160, 445, 619, 818, 931
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	2 cut(s)	338, 928
BciVI	GTATCC	1 cut(s)	588
BcnI	CCSGG	1 cut(s)	767
BcoDI	GTCTC	1 cut(s)	854
BfaI	CTAG	3 cut(s)	350, 471, 744
BfuAI	ACCTGC	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	7 cut(s)	39, 141, 183, 363, 366, 699, 741
BlsI	GCNGC	7 cut(s)	40, 142, 184, 364, 367, 700, 742
Bme1390I	CCNGG	3 cut(s)	338, 767, 928
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	478, 712
BmiI	GGNNCC	3 cut(s)	37, 97, 784
BmrFI	CCNGG	3 cut(s)	338, 767, 928
BmsI	GCATC	4 cut(s)	78, 169, 640, 931
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpmI	CTGGAG	2 cut(s)	636, 910
Bpu10I	CCTNAGC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	767
Bsa29I	ATCGAT	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	4 cut(s)	275, 336, 807, 975
BsaWI	WCCGGW	2 cut(s)	32, 239
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 487, 766, 772
Bse1I	ACTGG	3 cut(s)	14, 480, 726
Bse3DI	GCAATG	1 cut(s)	672
BseBI	CCWGG	2 cut(s)	338, 928
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	4 cut(s)	275, 336, 807, 975
BseGI	GGATG	3 cut(s)	307, 762, 946
BseLI	CCNNNNNNNGG	4 cut(s)	280, 487, 766, 772
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	4 cut(s)	135, 438, 587, 954
BseNI	ACTGG	3 cut(s)	14, 480, 726
BseRI	GAGGAG	1 cut(s)	980
BseXI	GCAGC	6 cut(s)	127, 169, 352, 374, 685, 727
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	4 cut(s)	5, 498, 713, 974
BshVI	ATCGAT	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	33, 240, 766
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	4 cut(s)	280, 487, 766, 772
BsmAI	GTCTC	1 cut(s)	854
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	4 cut(s)	5, 498, 713, 974
Bso31I	GGTCTC	1 cut(s)	854
Bsp143I	GATC	4 cut(s)	72, 111, 174, 417
Bsp19I	CCATGG	1 cut(s)	807
BspACI	CCGC	2 cut(s)	39, 191
BspANI	GGCC	4 cut(s)	5, 498, 713, 974
BspCNI	CTCAG	4 cut(s)	136, 439, 586, 955
BspDI	ATCGAT	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	3 cut(s)	37, 97, 784
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	854
BsrBI	CCGCTC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	3 cut(s)	14, 480, 726
BssECI	CCNNGG	4 cut(s)	275, 336, 807, 975
BssMI	GATC	4 cut(s)	72, 111, 174, 417
BssT1I	CCWWGG	3 cut(s)	275, 807, 975
Bst2UI	CCWGG	2 cut(s)	338, 928
Bst4CI	ACNGT	3 cut(s)	601, 682, 836
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	4 cut(s)	144, 447, 573, 963
BstDSI	CCRYGG	1 cut(s)	807
BstF5I	GGATG	3 cut(s)	307, 762, 946
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	4 cut(s)	75, 114, 177, 420
BstMAI	GTCTC	1 cut(s)	854
BstMBI	GATC	4 cut(s)	72, 111, 174, 417
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 398, 650, 737, 749
BstNI	CCWGG	2 cut(s)	338, 928
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	3 cut(s)	336, 765, 926
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	6 cut(s)	127, 169, 352, 374, 685, 727
Bsu15I	ATCGAT	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	5, 498, 713, 974
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	807
BtgZI	GCGATG	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	307, 762, 946
BtsIMutI	CAGTG	2 cut(s)	678, 733
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	235
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	478, 712
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	5 cut(s)	65, 776, 795, 817, 839
CviAII	CATG	6 cut(s)	234, 259, 289, 307, 593, 808
CviQI	GTAC	5 cut(s)	65, 776, 795, 817, 839
DdeI	CTNAG	4 cut(s)	144, 447, 573, 963
DpnI	GATC	4 cut(s)	74, 113, 176, 419
DpnII	GATC	4 cut(s)	72, 111, 174, 417
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	3 cut(s)	275, 807, 975
Eco147I	AGGCCT	1 cut(s)	974
Eco31I	GGTCTC	1 cut(s)	854
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	478
EcoRI	GAATTC	2 cut(s)	134, 668
EcoRII	CCWGG	2 cut(s)	336, 926
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	3 cut(s)	275, 807, 975
ErhI	CCWWGG	3 cut(s)	275, 807, 975
FaeI	CATG	6 cut(s)	237, 262, 292, 310, 596, 811
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	6 cut(s)	233, 258, 288, 306, 592, 807
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	7 cut(s)	39, 141, 183, 363, 366, 699, 741
FokI	GGATG	3 cut(s)	314, 749, 953
Fsp4HI	GCNGC	7 cut(s)	39, 141, 183, 363, 366, 699, 741
FspBI	CTAG	3 cut(s)	350, 471, 744
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	7 cut(s)	39, 141, 183, 363, 366, 699, 741
GsuI	CTGGAG	2 cut(s)	636, 910
HaeIII	GGCC	4 cut(s)	5, 498, 713, 974
HapII	CCGG	3 cut(s)	33, 240, 766
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	6 cut(s)	237, 262, 292, 310, 596, 811
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	2 cut(s)	247, 589
HindII	GTYRAC	2 cut(s)	247, 589
HpaI	GTTAAC	1 cut(s)	247
HpaII	CCGG	3 cut(s)	33, 240, 766
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	4 cut(s)	247, 589, 817, 839
Hpy188I	TCNGA	6 cut(s)	53, 95, 508, 532, 823, 964
Hpy188III	TCNNGA	6 cut(s)	125, 163, 421, 581, 604, 615
Hpy8I	GTNNAC	4 cut(s)	247, 589, 817, 839
HpyAV	CCTTC	7 cut(s)	125, 131, 196, 274, 292, 418, 964
HpyCH4III	ACNGT	3 cut(s)	601, 682, 836
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	9 cut(s)	237, 362, 375, 401, 434, 596, 701, 944, 990
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 398, 650, 737, 749
HpyF3I	CTNAG	4 cut(s)	144, 447, 573, 963
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	6 cut(s)	237, 262, 292, 310, 596, 811
HspAI	GCGC	1 cut(s)	347
KspAI	GTTAAC	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	72, 111, 174, 417
LmnI	GCTCC	3 cut(s)	35, 95, 198
Lsp1109I	GCAGC	6 cut(s)	127, 169, 352, 374, 685, 727
LweI	GCATC	4 cut(s)	78, 169, 640, 931
MaeI	CTAG	3 cut(s)	350, 471, 744
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	3 cut(s)	28, 755, 868
MalI	GATC	4 cut(s)	74, 113, 176, 419
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	4 cut(s)	72, 111, 174, 417
MboII	GAAGA	3 cut(s)	904, 943, 946
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	134, 428, 668, 702, 994
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	5 cut(s)	139, 223, 277, 784, 958
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	198, 246, 997
MslI	CAYNNNNRTG	1 cut(s)	812
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	365, 740, 845
MspI	CCGG	3 cut(s)	33, 240, 766
MspR9I	CCNGG	3 cut(s)	338, 767, 928
MvaI	CCWGG	2 cut(s)	338, 928
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	5 cut(s)	146, 398, 650, 737, 749
NciI	CCSGG	1 cut(s)	767
NcoI	CCATGG	1 cut(s)	807
NdeII	GATC	4 cut(s)	72, 111, 174, 417
NlaIII	CATG	6 cut(s)	237, 262, 292, 310, 596, 811
NlaIV	GGNNCC	3 cut(s)	37, 97, 784
NmuCI	GTSAC	2 cut(s)	755, 868
NspI	RCATGY	1 cut(s)	237
PaeI	GCATGC	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	974
PdmI	GAANNNNTTC	1 cut(s)	15
PfoI	TCCNGGA	2 cut(s)	765, 926
PkrI	GCNGC	7 cut(s)	40, 142, 184, 364, 367, 700, 742
Psp1406I	AACGTT	1 cut(s)	519
Psp6I	CCWGG	2 cut(s)	336, 926
PspGI	CCWGG	2 cut(s)	336, 926
PspN4I	GGNNCC	3 cut(s)	37, 97, 784
PspPI	GGNCC	2 cut(s)	478, 712
PvuII	CAGCTG	3 cut(s)	365, 740, 845
RsaI	GTAC	5 cut(s)	66, 777, 796, 818, 840
RsaNI	GTAC	5 cut(s)	65, 776, 795, 817, 839
RseI	CAYNNNNRTG	1 cut(s)	812
SaqAI	TTAA	3 cut(s)	198, 246, 997
SatI	GCNGC	7 cut(s)	39, 141, 183, 363, 366, 699, 741
Sau3AI	GATC	4 cut(s)	72, 111, 174, 417
Sau96I	GGNCC	2 cut(s)	478, 712
ScrFI	CCNGG	3 cut(s)	338, 767, 928
SfaNI	GCATC	4 cut(s)	78, 169, 640, 931
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	812
SphI	GCATGC	1 cut(s)	237
Sse9I	AATT	5 cut(s)	134, 428, 668, 702, 994
SseBI	AGGCCT	1 cut(s)	974
SsiI	CCGC	2 cut(s)	39, 191
SspMI	CTAG	3 cut(s)	350, 471, 744
StuI	AGGCCT	1 cut(s)	974
StyD4I	CCNGG	3 cut(s)	336, 765, 926
StyI	CCWWGG	3 cut(s)	275, 807, 975
TaaI	ACNGT	3 cut(s)	601, 682, 836
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	132, 177
TasI	AATT	5 cut(s)	134, 428, 668, 702, 994
TatI	WGTACW	1 cut(s)	816
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	198, 246, 997
Tru9I	TTAA	3 cut(s)	198, 246, 997
TscAI	CASTG	2 cut(s)	685, 733
TseFI	GTSAC	2 cut(s)	755, 868
TseI	GCWGC	6 cut(s)	140, 182, 362, 365, 698, 740
Tsp45I	GTSAC	2 cut(s)	755, 868
TspDTI	ATGAA	1 cut(s)	661
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	2 cut(s)	685, 733
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	3 cut(s)	134, 428, 668
XceI	RCATGY	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	2 cut(s)	795, 934
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	3 cut(s)	350, 471, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.