Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008339.1

Orthogroup ID

OG0013912

Physical Location & Seq

Genomic Coordinates Forward (+)

40678 .. 43287

Gene Structure 2610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008339.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atgacgccgtcaaagcgtctccttgttttccaaaccgctctacgtcgtcgtttcattccccaccccttcgtaggctccaaaagcgacgccgtttcaagctatcccctcggacacatcctctctatctcagatcaacttaaccatcatcagatcgtttcgttttcttcatcggaatccatggccaaagaaccagctcgcgtcctcgttaccggagccgcaggtcaaatcggatatgctcttgtacctatgatcgctaggggagtgatgctcggagctgaccagcccgtgatccttcaccttcttgatatcccatttgctgctgaggcattgaatggtgtcaagatggagttgatcgatgccgctttccctcttctcaaaggtgttgttgctacaactgatgttgtggaggcctgcaccggagtcaacattgcagtcatggttggtggcttcccgaggaaagagggcatggaaaggaaagatgtcatgtcaaagaacgtttctatctacaagtcccaagcttctgcactagagaagtatgcagctgctaactgcaaggttttggttgttgctaatcctgcaaacaccaacgctttgatcttgaaggaatttgcaccatcaattcctgagaaaaacatatcttgcctgacgagactggaccataacagggcattgggccaggtttcagagagattgaatgttcaagtttctgatgtgaaaaatgtcattatctggggaaaccactcatcatctcagtatcctgatgtcaaccatgcaactgtcaagacaccatctggagagaagcccgtccgtgagcttgttgctgatgatgcttggttgaatggagaattcattgccactgttcaacaacggggtgctgcaattatcaaggcccgaaagctatccagtgcattgtcagctgctagttctgcttgtgatcacatcagggattgggtacttggaaccccagagggcacttgggtttccatgggtgtttactctgatggctcgtacaatgtaccagctggtctcatttactcattcccagtcacttgctgtaatggagattggaagattgttcagggactccctattgatgagttctccaggaagaagttggatgcgaccgccgatgagctttcagaggagaaggccttggcatacacttgcatcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

391

Amino Acids

42.14

Weight (kDa)

7.1

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04410 AT5G43330
fragaria_vesca	FvH4_4g03630
malus_domestica	MD13G1214000.v1.1 MD16G1219000.v1.1
prunus_persica	Prupe.1G039300_v2.0.a1 Prupe.1G039300_v2.0.a1
pyrus_communis	pycom13g18720 pycom16g18250
rosa_chinensis	RchiOBHm_Chr4g0393011
rosa_laevigata	RLG00000009775
rosa_multiflora	Rmu_sc0008339.1_g000014
rosa_roxburghii	Rroxscaffold_5G00338110
rosa_rugosa	Rorug04G0003000
rosa_samantha	Rh4BG041300 Rh4CG048900
rosa_wichuraiana	Rw4G003570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	38
AccII	CGCG	1 cut(s)	198
AciI	CCGC	4 cut(s)	36, 216, 360, 1125
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	605, 845
AcyI	GRCGYC	2 cut(s)	5, 87
AfaI	GTAC	4 cut(s)	243, 954, 1010, 1017
AfiI	CCNNNNNNNGG	2 cut(s)	71, 664
AgsI	TTSAA	7 cut(s)	96, 331, 601, 694, 701, 838, 863
AjnI	CCWGG	2 cut(s)	675, 1103
Alw26I	GTCTC	3 cut(s)	23, 643, 1031
AlwI	GGATC	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	5 cut(s)	180, 408, 673, 888, 1149
ApeKI	GCWGC	5 cut(s)	317, 539, 542, 875, 917
ApoI	RAATTY	2 cut(s)	605, 845
AspS9I	GGNCC	3 cut(s)	655, 673, 889
AsuHPI	GGTGA	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	655
BaeGI	GKGCMC	1 cut(s)	974
BalI	TGGCCA	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	5 cut(s)	304, 529, 551, 862, 904
BccI	CCATC	5 cut(s)	150, 337, 622, 796, 995
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	677, 1105
BciVI	GTATCC	1 cut(s)	765
BclI	TGATCA	1 cut(s)	934
BcoDI	GTCTC	3 cut(s)	23, 643, 1031
BfaI	CTAG	3 cut(s)	255, 527, 921
BfuAI	ACCTGC	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	765
BisI	GCNGC	7 cut(s)	216, 318, 360, 540, 543, 876, 918
BlsI	GCNGC	7 cut(s)	217, 319, 361, 541, 544, 877, 919
Bme1390I	CCNGG	2 cut(s)	677, 1105
Bme18I	GGWCC	1 cut(s)	655
BmeT110I	CYCGRG	1 cut(s)	451
BmgT120I	GGNCC	3 cut(s)	655, 673, 889
BmiI	GGNNCC	3 cut(s)	76, 214, 961
BmrFI	CCNGG	2 cut(s)	677, 1105
BmrI	ACTGGG	1 cut(s)	1037
BmsI	GCATC	4 cut(s)	255, 346, 817, 1108
BmuI	ACTGGG	1 cut(s)	1037
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
BpmI	CTGGAG	2 cut(s)	813, 1087
Bpu10I	CCTNAGC	1 cut(s)	321
Bsa29I	ATCGAT	1 cut(s)	354
BsaHI	GRCGYC	2 cut(s)	5, 87
BsaI	GGTCTC	1 cut(s)	1031
BsaJI	CCNNGG	5 cut(s)	106, 177, 452, 984, 1152
BsaWI	WCCGGW	2 cut(s)	209, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 664
Bse1I	ACTGG	3 cut(s)	657, 903, 1043
Bse3DI	GCAATG	2 cut(s)	426, 849
BseBI	CCWGG	2 cut(s)	677, 1105
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	5 cut(s)	106, 177, 452, 984, 1152
BseGI	GGATG	2 cut(s)	114, 1123
BseLI	CCNNNNNNNGG	2 cut(s)	71, 664
BseMI	GCAATG	2 cut(s)	426, 849
BseMII	CTCAG	4 cut(s)	141, 312, 615, 764
BseNI	ACTGG	3 cut(s)	657, 903, 1043
BseRI	GAGGAG	1 cut(s)	1157
BseSI	GKGCMC	1 cut(s)	974
BseXI	GCAGC	5 cut(s)	304, 529, 551, 862, 904
BsgI	GTGCAG	2 cut(s)	397, 507
Bsh1236I	CGCG	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	1125
BshFI	GGCC	5 cut(s)	182, 410, 675, 890, 1151
BshVI	ATCGAT	1 cut(s)	354
BsiEI	CGRYCG	1 cut(s)	1125
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	210, 417
BslFI	GGGAC	2 cut(s)	496, 1095
BslI	CCNNNNNNNGG	2 cut(s)	71, 664
BsmAI	GTCTC	3 cut(s)	23, 643, 1031
BsmBI	CGTCTC	1 cut(s)	23
BsmFI	GGGAC	2 cut(s)	496, 1095
BsnI	GGCC	5 cut(s)	182, 410, 675, 890, 1151
Bso31I	GGTCTC	1 cut(s)	1031
BsoBI	CYCGRG	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	974
Bsp143I	GATC	7 cut(s)	130, 150, 249, 288, 351, 594, 934
Bsp19I	CCATGG	2 cut(s)	177, 984
BspACI	CCGC	4 cut(s)	36, 216, 360, 1125
BspANI	GGCC	5 cut(s)	182, 410, 675, 890, 1151
BspCNI	CTCAG	4 cut(s)	140, 313, 616, 763
BspDI	ATCGAT	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	76, 214, 961
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	1031
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	426, 849
BsrI	ACTGG	3 cut(s)	657, 903, 1043
BssECI	CCNNGG	5 cut(s)	106, 177, 452, 984, 1152
BssMI	GATC	7 cut(s)	130, 150, 249, 288, 351, 594, 934
BssNI	GRCGYC	2 cut(s)	5, 87
BssT1I	CCWWGG	3 cut(s)	177, 984, 1152
Bst2UI	CCWGG	2 cut(s)	677, 1105
Bst4CI	ACNGT	2 cut(s)	778, 859
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	2 cut(s)	5, 87
BstC8I	GCNNGC	2 cut(s)	196, 412
BstDEI	CTNAG	4 cut(s)	127, 321, 624, 750
BstDSI	CCRYGG	2 cut(s)	177, 984
BstF5I	GGATG	2 cut(s)	114, 1123
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	7 cut(s)	133, 153, 252, 291, 354, 597, 937
BstMAI	GTCTC	3 cut(s)	23, 643, 1031
BstMBI	GATC	7 cut(s)	130, 150, 249, 288, 351, 594, 934
BstMCI	CGRYCG	1 cut(s)	1125
BstMWI	GCNNNNNNNGC	7 cut(s)	13, 81, 323, 575, 827, 914, 926
BstNI	CCWGG	2 cut(s)	677, 1105
BstSCI	CCNGG	2 cut(s)	675, 1103
BstSLI	GKGCMC	1 cut(s)	974
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	5 cut(s)	304, 529, 551, 862, 904
Bsu15I	ATCGAT	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	765
BsuRI	GGCC	5 cut(s)	182, 410, 675, 890, 1151
BsuTUI	ATCGAT	1 cut(s)	354
BtgI	CCRYGG	2 cut(s)	177, 984
BtsCI	GGATG	2 cut(s)	114, 1123
BtsIMutI	CAGTG	2 cut(s)	855, 910
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	196, 412
Cfr13I	GGNCC	3 cut(s)	655, 673, 889
ClaI	ATCGAT	1 cut(s)	354
CseI	GACGC	4 cut(s)	5, 13, 95, 187
Csp6I	GTAC	4 cut(s)	242, 953, 1009, 1016
CviAII	CATG	6 cut(s)	178, 436, 466, 484, 770, 985
CviQI	GTAC	4 cut(s)	242, 953, 1009, 1016
DdeI	CTNAG	4 cut(s)	127, 321, 624, 750
DpnI	GATC	7 cut(s)	132, 152, 251, 290, 353, 596, 936
DpnII	GATC	7 cut(s)	130, 150, 249, 288, 351, 594, 934
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco130I	CCWWGG	3 cut(s)	177, 984, 1152
Eco147I	AGGCCT	2 cut(s)	410, 1151
Eco31I	GGTCTC	1 cut(s)	1031
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	655
Eco88I	CYCGRG	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	2 cut(s)	675, 1103
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	3 cut(s)	177, 984, 1152
ErhI	CCWWGG	3 cut(s)	177, 984, 1152
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	6 cut(s)	181, 439, 469, 487, 773, 988
FaqI	GGGAC	2 cut(s)	496, 1095
FatI	CATG	6 cut(s)	177, 435, 465, 483, 769, 984
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	7 cut(s)	216, 318, 360, 540, 543, 876, 918
FokI	GGATG	2 cut(s)	101, 1130
Fsp4HI	GCNGC	7 cut(s)	216, 318, 360, 540, 543, 876, 918
FspBI	CTAG	3 cut(s)	255, 527, 921
GluI	GCNGC	7 cut(s)	216, 318, 360, 540, 543, 876, 918
GsuI	CTGGAG	2 cut(s)	813, 1087
HaeIII	GGCC	5 cut(s)	182, 410, 675, 890, 1151
HapII	CCGG	2 cut(s)	210, 417
HgaI	GACGC	4 cut(s)	5, 13, 95, 187
Hin1I	GRCGYC	2 cut(s)	5, 87
Hin1II	CATG	6 cut(s)	181, 439, 469, 487, 773, 988
HincII	GTYRAC	2 cut(s)	424, 766
HindII	GTYRAC	2 cut(s)	424, 766
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	3 cut(s)	173, 420, 1083
HpaII	CCGG	2 cut(s)	210, 417
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	3 cut(s)	424, 766, 994
Hpy188III	TCNNGA	8 cut(s)	302, 340, 451, 598, 623, 758, 781, 792
Hpy8I	GTNNAC	3 cut(s)	424, 766, 994
Hpy99I	CGWCG	3 cut(s)	48, 51, 89
HpyAV	CCTTC	5 cut(s)	76, 302, 308, 595, 1141
HpyCH4III	ACNGT	2 cut(s)	778, 859
HpyCH4IV	ACGT	2 cut(s)	43, 495
HpyF10VI	GCNNNNNNNGC	7 cut(s)	13, 81, 323, 575, 827, 914, 926
HpyF3I	CTNAG	4 cut(s)	127, 321, 624, 750
HpySE526I	ACGT	2 cut(s)	43, 495
Hsp92I	GRCGYC	2 cut(s)	5, 87
Hsp92II	CATG	6 cut(s)	181, 439, 469, 487, 773, 988
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	7 cut(s)	130, 150, 249, 288, 351, 594, 934
LmnI	GCTCC	3 cut(s)	80, 212, 272
Lsp1109I	GCAGC	5 cut(s)	304, 529, 551, 862, 904
LweI	GCATC	4 cut(s)	255, 346, 817, 1108
MaeI	CTAG	3 cut(s)	255, 527, 921
MaeII	ACGT	2 cut(s)	43, 495
MaeIII	GTNAC	2 cut(s)	205, 1045
MalI	GATC	7 cut(s)	132, 152, 251, 290, 353, 596, 936
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	7 cut(s)	130, 150, 249, 288, 351, 594, 934
MboII	GAAGA	4 cut(s)	156, 362, 1081, 1120
MhlI	GDGCHC	1 cut(s)	974
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	5 cut(s)	605, 618, 845, 879, 1171
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	2 cut(s)	429, 1077
MmeI	TCCRAC	1 cut(s)	1095
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	2 cut(s)	138, 1174
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	3 cut(s)	542, 917, 1022
MspI	CCGG	2 cut(s)	210, 417
MspR9I	CCNGG	2 cut(s)	677, 1105
MvaI	CCWGG	2 cut(s)	677, 1105
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	7 cut(s)	13, 81, 323, 575, 827, 914, 926
NcoI	CCATGG	2 cut(s)	177, 984
NdeII	GATC	7 cut(s)	130, 150, 249, 288, 351, 594, 934
NlaIII	CATG	6 cut(s)	181, 439, 469, 487, 773, 988
NlaIV	GGNNCC	3 cut(s)	76, 214, 961
NmuCI	GTSAC	1 cut(s)	1045
PceI	AGGCCT	2 cut(s)	410, 1151
PfeI	GAWTC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	7
PfoI	TCCNGGA	1 cut(s)	1103
PkrI	GCNGC	7 cut(s)	217, 319, 361, 541, 544, 877, 919
PleI	GAGTC	2 cut(s)	428, 1077
PpsI	GAGTC	2 cut(s)	428, 1077
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	675, 1103
PspGI	CCWGG	2 cut(s)	675, 1103
PspN4I	GGNNCC	3 cut(s)	76, 214, 961
PspPI	GGNCC	3 cut(s)	655, 673, 889
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	3 cut(s)	542, 917, 1022
RsaI	GTAC	4 cut(s)	243, 954, 1010, 1017
RsaNI	GTAC	4 cut(s)	242, 953, 1009, 1016
SaqAI	TTAA	2 cut(s)	138, 1174
SatI	GCNGC	7 cut(s)	216, 318, 360, 540, 543, 876, 918
Sau3AI	GATC	7 cut(s)	130, 150, 249, 288, 351, 594, 934
Sau96I	GGNCC	3 cut(s)	655, 673, 889
SchI	GAGTC	2 cut(s)	429, 1077
ScrFI	CCNGG	2 cut(s)	677, 1105
SduI	GDGCHC	1 cut(s)	974
SfaNI	GCATC	4 cut(s)	255, 346, 817, 1108
SinI	GGWCC	1 cut(s)	655
Sse9I	AATT	5 cut(s)	605, 618, 845, 879, 1171
SseBI	AGGCCT	2 cut(s)	410, 1151
SsiI	CCGC	4 cut(s)	36, 216, 360, 1125
SspMI	CTAG	3 cut(s)	255, 527, 921
StuI	AGGCCT	2 cut(s)	410, 1151
StyD4I	CCNGG	2 cut(s)	675, 1103
StyI	CCWWGG	3 cut(s)	177, 984, 1152
TaaI	ACNGT	2 cut(s)	778, 859
TaiI	ACGT	2 cut(s)	46, 498
TaqI	TCGA	1 cut(s)	354
TasI	AATT	5 cut(s)	605, 618, 845, 879, 1171
TauI	GCSGC	2 cut(s)	218, 362
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	138, 1174
Tru9I	TTAA	2 cut(s)	138, 1174
TscAI	CASTG	2 cut(s)	862, 910
TseFI	GTSAC	1 cut(s)	1045
TseI	GCWGC	5 cut(s)	317, 539, 542, 875, 917
Tsp45I	GTSAC	1 cut(s)	1045
TspDTI	ATGAA	3 cut(s)	43, 156, 838
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	2 cut(s)	862, 910
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	655
XapI	RAATTY	2 cut(s)	605, 845
XcmI	CCANNNNNNNNNTGG	2 cut(s)	972, 1111
XspI	CTAG	3 cut(s)	255, 527, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.