Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013912

Physical Location & Seq

Genomic Coordinates Forward (+)

17390381 .. 17392741

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGAAGGAACCAGTTCGTGTTCTTGTTACCGGAGCTGCAGGACAAATCGGATATGCTCTTGTTCCTATGATTGCAAGGGGGATAATGCTTGGTGCTGATCAGCCTGTGATCCTCCACATGCTTGACATCCCTTTTGCAGCAGAAGCTTTGAACGGTGTGAAGATGGAATTGGTCGATGCTGCTTTCCCTCTTCTAAAGGGTGTGGTGGCTACAACTGATGCTGTTGAAGCGTGTACCGGTGTTAATGTTGCTGTCATGGTTGGTGGTTTCCCGAGGAAGGAAGGAATGGAGAGGAAGGATGTTATGTCCAAGAACGTTTCCATTTACAAGTCTCAAGCTTCTGCCTTGGAGAAGCATGCTGCACCAAACTGCAAGGTTCTGGTTGTTGCAAACCCTGCAAACACCAATGCATTGATCCTGAAGGAATTTGCACCATCGATCCCAGAGAAGAACATTACTTGCTTGACCAGGCTTGACCACAACAGGGCATTGGGACAAGTGTCTGAGAGGTTAAGCGTACCAGTGTCTGATGTGAAGAACGTGATTATCTGGGGAAACCACTCATCAACCCAATACCCAGATGTCAACCACGCTACCGTTAAGACTTCCGTTGGAGAGAAGCCAGTGCGTGAGCTAGTCAAGAATGACGAGTGGTTGAATGGAGAGTTCATCTCTACCGTTCAACAACGTGGTGCTGCCATTATCAAGGCCAGGAAGCTGTCTAGTGCACTTTCTGCAGCTAGCTCAGCTTGTGACCATATCCGTGATTGGGTTGTTGGAACACCTGAGGGCACATTTGTTTCAATGGGAGTATACTCAGATGGATCCTACAATGTTCCAGCTGGACTTATCTACTCCTTCCCCGTAACCTGCCGTAATGGAGAGTGGACCATTGTTCAAGGTTTACCGATTGATGACGCATCGAGGAAGAAGATGGATTTGACAGCAGAGGAGTTGAAGGAAGAGAAGGACCTCGCTTACTCATGCCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0015980 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030054 GO:0030060 GO:0031090 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0046686 GO:0048046 GO:0050896 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098588 GO:0098805 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

332

Amino Acids

35.67

Weight (kDa)

6.33

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	6 - 153	5e-32	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	157 - 326	3e-45	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04410 AT5G43330
fragaria_vesca	FvH4_4g03630
malus_domestica	MD13G1214000.v1.1 MD16G1219000.v1.1
prunus_persica	Prupe.1G039300_v2.0.a1 Prupe.1G039300_v2.0.a1
pyrus_communis	pycom13g18720 pycom16g18250
rosa_chinensis	RchiOBHm_Chr4g0393011
rosa_laevigata	RLG00000009775
rosa_multiflora	Rmu_sc0008339.1_g000014
rosa_roxburghii	Rroxscaffold_5G00338110
rosa_rugosa	Rorug04G0003000
rosa_samantha	Rh4BG041300 Rh4CG048900
rosa_wichuraiana	Rw4G003570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	881
AccI	GTMKAC	1 cut(s)	816
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	5 cut(s)	106, 412, 436, 822, 835
AcsI	RAATTY	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	2 cut(s)	238, 522
AfiI	CCNNNNNNNGG	3 cut(s)	280, 487, 772
AgeI	ACCGGT	1 cut(s)	239
AgsI	TTSAA	7 cut(s)	154, 230, 661, 686, 807, 902, 961
AjnI	CCWGG	2 cut(s)	470, 713
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	9 cut(s)	38, 149, 341, 637, 721, 743, 747, 752, 845
AluI	AGCT	9 cut(s)	38, 149, 341, 637, 721, 743, 747, 752, 845
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	339
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	5 cut(s)	106, 412, 436, 822, 835
AlwNI	CAGNNNCTG	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	711
ApaLI	GTGCAC	1 cut(s)	729
ApeKI	GCWGC	6 cut(s)	38, 140, 182, 362, 698, 740
ApoI	RAATTY	1 cut(s)	428
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AsiGI	ACCGGT	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	15
AspS9I	GGNCC	2 cut(s)	891, 973
AsuNHI	GCTAGC	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	2 cut(s)	891, 973
AxyI	CCTNAGG	1 cut(s)	789
BaeGI	GKGCMC	2 cut(s)	733, 797
BamHI	GGATCC	1 cut(s)	827
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	6 cut(s)	25, 152, 169, 349, 685, 752
BccI	CCATC	4 cut(s)	160, 445, 818, 931
BceAI	ACGGC	1 cut(s)	861
BciT130I	CCWGG	2 cut(s)	472, 715
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	3 cut(s)	638, 726, 744
BfmI	CTRYAG	2 cut(s)	39, 738
BfuAI	ACCTGC	1 cut(s)	881
BisI	GCNGC	6 cut(s)	39, 141, 183, 363, 699, 741
BlpI	GCTNAGC	1 cut(s)	748
BlsI	GCNGC	6 cut(s)	40, 142, 184, 364, 700, 742
Bme1390I	CCNGG	2 cut(s)	472, 715
Bme18I	GGWCC	2 cut(s)	891, 973
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	891, 973
BmiI	GGNNCC	2 cut(s)	12, 829
BmrFI	CCNGG	2 cut(s)	472, 715
BmsI	GCATC	3 cut(s)	169, 211, 932
BmtI	GCTAGC	1 cut(s)	747
BoxI	GACNNNNGTC	1 cut(s)	502
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
Bpu1102I	GCTNAGC	1 cut(s)	748
BpuEI	CTTGAG	1 cut(s)	321
Bsa29I	ATCGAT	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	275, 348
BsaWI	WCCGGW	2 cut(s)	32, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 487, 772
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	3 cut(s)	14, 524, 626
Bse21I	CCTNAGG	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	472, 715
BseCI	ATCGAT	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	275, 348
BseGI	GGATG	2 cut(s)	129, 307
BseLI	CCNNNNNNNGG	3 cut(s)	280, 487, 772
BseMII	CTCAG	4 cut(s)	498, 762, 780, 834
BseNI	ACTGG	3 cut(s)	14, 524, 626
BseRI	GAGGAG	1 cut(s)	968
BseSI	GKGCMC	2 cut(s)	733, 797
BseXI	GCAGC	6 cut(s)	25, 152, 169, 349, 685, 752
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	713
BshTI	ACCGGT	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	33, 240
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	3 cut(s)	280, 487, 772
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	1 cut(s)	713
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	2 cut(s)	733, 797
Bsp143I	GATC	5 cut(s)	100, 111, 417, 441, 827
Bsp1720I	GCTNAGC	1 cut(s)	748
BspANI	GGCC	1 cut(s)	713
BspCNI	CTCAG	4 cut(s)	499, 761, 781, 833
BspDI	ATCGAT	1 cut(s)	440
BspLI	GGNNCC	2 cut(s)	12, 829
BspMAI	CTGCAG	2 cut(s)	43, 742
BspMI	ACCTGC	1 cut(s)	881
BspOI	GCTAGC	1 cut(s)	747
BspPI	GGATC	5 cut(s)	106, 412, 436, 822, 835
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	3 cut(s)	14, 524, 626
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	275, 348
BssMI	GATC	5 cut(s)	100, 111, 417, 441, 827
BssNAI	GTATAC	1 cut(s)	817
BssT1I	CCWWGG	1 cut(s)	348
Bst1107I	GTATAC	1 cut(s)	817
Bst2UI	CCWGG	2 cut(s)	472, 715
Bst4CI	ACNGT	3 cut(s)	158, 601, 682
Bst6I	CTCTTC	2 cut(s)	198, 960
BstAPI	GCANNNNNTGC	2 cut(s)	398, 737
BstC8I	GCNNGC	2 cut(s)	360, 745
BstDEI	CTNAG	4 cut(s)	507, 748, 789, 820
BstF5I	GGATG	2 cut(s)	129, 307
BstKTI	GATC	5 cut(s)	103, 114, 420, 444, 830
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	5 cut(s)	100, 111, 417, 441, 827
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 230, 398, 737, 749
BstNI	CCWGG	2 cut(s)	472, 715
BstNSI	RCATGY	2 cut(s)	124, 362
BstPAI	GACNNNNGTC	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	470, 713
BstSFI	CTRYAG	2 cut(s)	39, 738
BstSLI	GKGCMC	2 cut(s)	733, 797
BstV1I	GCAGC	6 cut(s)	25, 152, 169, 349, 685, 752
BstX2I	RGATCY	1 cut(s)	827
BstYI	RGATCY	1 cut(s)	827
BstZ17I	GTATAC	1 cut(s)	817
Bsu15I	ATCGAT	1 cut(s)	440
Bsu36I	CCTNAGG	1 cut(s)	789
BsuRI	GGCC	1 cut(s)	713
BsuTUI	ATCGAT	1 cut(s)	440
BtsCI	GGATG	2 cut(s)	129, 307
BtsIMutI	CAGTG	2 cut(s)	531, 633
BveI	ACCTGC	1 cut(s)	881
Cac8I	GCNNGC	2 cut(s)	360, 745
CaiI	CAGNNNCTG	1 cut(s)	530
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	891, 973
ClaI	ATCGAT	1 cut(s)	440
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	2 cut(s)	237, 521
CspAI	ACCGGT	1 cut(s)	239
CviAII	CATG	4 cut(s)	121, 259, 359, 987
CviQI	GTAC	2 cut(s)	237, 521
DdeI	CTNAG	4 cut(s)	507, 748, 789, 820
DpnI	GATC	5 cut(s)	102, 113, 419, 443, 829
DpnII	GATC	5 cut(s)	100, 111, 417, 441, 827
Eam1104I	CTCTTC	2 cut(s)	198, 960
EarI	CTCTTC	2 cut(s)	198, 960
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	891, 973
Eco57I	CTGAAG	1 cut(s)	443
Eco81I	CCTNAGG	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	973
EcoRII	CCWGG	2 cut(s)	470, 713
EcoT14I	CCWWGG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	124, 262, 362, 990
FaiI	YATR	9 cut(s)	57, 71, 122, 260, 308, 360, 762, 817, 988
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	4 cut(s)	120, 258, 358, 986
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	6 cut(s)	39, 141, 183, 363, 699, 741
FokI	GGATG	2 cut(s)	116, 314
Fsp4HI	GCNGC	6 cut(s)	39, 141, 183, 363, 699, 741
FspBI	CTAG	3 cut(s)	638, 726, 744
GluI	GCNGC	6 cut(s)	39, 141, 183, 363, 699, 741
HaeIII	GGCC	1 cut(s)	713
HapII	CCGG	2 cut(s)	33, 240
HgaI	GACGC	1 cut(s)	929
Hin1II	CATG	4 cut(s)	124, 262, 362, 990
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	2 cut(s)	147, 339
HpaII	CCGG	2 cut(s)	33, 240
Hpy166II	GTNNAC	6 cut(s)	237, 589, 731, 817, 891, 908
Hpy188I	TCNGA	4 cut(s)	53, 508, 532, 823
Hpy188III	TCNNGA	3 cut(s)	274, 421, 643
Hpy8I	GTNNAC	6 cut(s)	237, 589, 731, 817, 891, 908
HpyAV	CCTTC	7 cut(s)	274, 278, 292, 418, 871, 955, 964
HpyCH4III	ACNGT	3 cut(s)	158, 601, 682
HpyCH4IV	ACGT	3 cut(s)	318, 543, 691
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 230, 398, 737, 749
HpyF3I	CTNAG	4 cut(s)	507, 748, 789, 820
HpySE526I	ACGT	3 cut(s)	318, 543, 691
Hsp92II	CATG	4 cut(s)	124, 262, 362, 990
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	100, 111, 417, 441, 827
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	6 cut(s)	25, 152, 169, 349, 685, 752
LweI	GCATC	3 cut(s)	169, 211, 932
MaeI	CTAG	3 cut(s)	638, 726, 744
MaeII	ACGT	3 cut(s)	318, 543, 691
MaeIII	GTNAC	3 cut(s)	28, 755, 868
MalI	GATC	5 cut(s)	102, 113, 419, 443, 829
MboI	GATC	5 cut(s)	100, 111, 417, 441, 827
MboII	GAAGA	7 cut(s)	175, 185, 463, 550, 943, 946, 977
MflI	RGATCY	1 cut(s)	827
MhlI	GDGCHC	2 cut(s)	733, 797
MluCI	AATT	2 cut(s)	170, 428
MmeI	TCCRAC	2 cut(s)	595, 760
MnlI	CCTC	9 cut(s)	125, 201, 270, 288, 504, 784, 921, 946, 986
Mph1103I	ATGCAT	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	4 cut(s)	246, 515, 603, 997
MslI	CAYNNNNRTG	1 cut(s)	765
MspA1I	CMGCKG	1 cut(s)	845
MspI	CCGG	2 cut(s)	33, 240
MspR9I	CCNGG	2 cut(s)	472, 715
MvaI	CCWGG	2 cut(s)	472, 715
MwoI	GCNNNNNNNGC	5 cut(s)	146, 230, 398, 737, 749
NdeII	GATC	5 cut(s)	100, 111, 417, 441, 827
NheI	GCTAGC	1 cut(s)	743
NlaIII	CATG	4 cut(s)	124, 262, 362, 990
NlaIV	GGNNCC	2 cut(s)	12, 829
NmuCI	GTSAC	1 cut(s)	755
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	2 cut(s)	124, 362
PaeI	GCATGC	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	15
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	6 cut(s)	40, 142, 184, 364, 700, 742
PpuMI	RGGWCCY	1 cut(s)	973
PshAI	GACNNNNGTC	1 cut(s)	502
Psp1406I	AACGTT	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	973
Psp6I	CCWGG	2 cut(s)	470, 713
PspGI	CCWGG	2 cut(s)	470, 713
PspN4I	GGNNCC	2 cut(s)	12, 829
PspPI	GGNCC	2 cut(s)	891, 973
PspPPI	RGGWCCY	1 cut(s)	973
PstI	CTGCAG	2 cut(s)	43, 742
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	827
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	2 cut(s)	238, 522
RsaNI	GTAC	2 cut(s)	237, 521
RseI	CAYNNNNRTG	1 cut(s)	765
SaqAI	TTAA	4 cut(s)	246, 515, 603, 997
SatI	GCNGC	6 cut(s)	39, 141, 183, 363, 699, 741
Sau3AI	GATC	5 cut(s)	100, 111, 417, 441, 827
Sau96I	GGNCC	2 cut(s)	891, 973
ScrFI	CCNGG	2 cut(s)	472, 715
SduI	GDGCHC	2 cut(s)	733, 797
SfaNI	GCATC	3 cut(s)	169, 211, 932
SfcI	CTRYAG	2 cut(s)	39, 738
SinI	GGWCC	2 cut(s)	891, 973
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	2 cut(s)	170, 428
SspMI	CTAG	3 cut(s)	638, 726, 744
StyD4I	CCNGG	2 cut(s)	470, 713
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	158, 601, 682
TaiI	ACGT	3 cut(s)	321, 546, 694
TaqI	TCGA	3 cut(s)	177, 440, 926
TasI	AATT	2 cut(s)	170, 428
Tru1I	TTAA	4 cut(s)	246, 515, 603, 997
Tru9I	TTAA	4 cut(s)	246, 515, 603, 997
TscAI	CASTG	2 cut(s)	531, 633
TseFI	GTSAC	1 cut(s)	755
TseI	GCWGC	6 cut(s)	38, 140, 182, 362, 698, 740
Tsp45I	GTSAC	1 cut(s)	755
TspDTI	ATGAA	1 cut(s)	661
TspGWI	ACGGA	2 cut(s)	601, 755
TspRI	CASTG	2 cut(s)	531, 633
VneI	GTGCAC	1 cut(s)	729
VpaK11BI	GGWCC	2 cut(s)	891, 973
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	2 cut(s)	124, 362
XmiI	GTMKAC	1 cut(s)	816
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	3 cut(s)	638, 726, 744
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.