Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011936

Physical Location & Seq

Genomic Coordinates Reverse (-)

1289734 .. 1291112

Gene Structure 1379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGACGGAGGCGATGATAAGAAATAAGCCAGGAATGGCGAGTGTGAAGGATATGCCGCTGCTTCAGGATGGTCCGCCACCGGGTGGGTTCGCACCGGTCCGATATGCCCGCCGGATATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGGGCATTGAAGGAAGAGAAATATGCTGCTCGTAGAACAATACTTCCCATTCTTCAAGCAGAAGAAGATGAAAGGTTTGTGTCTGAGTGGAAAAAGTATCTGGAATATGAGGCTGATGTAATGAAAGATGTTCCGGGATGGAAAGTTGGCGAGAATGTGTACAATTCTGGTCGCTGGATGCCTCCGGCTACTGGGGAACTCCGTCCTGATGTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0016020 GO:0019866 GO:0022414 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

GRIM-19

Protein Analysis

143

Amino Acids

16.13

Weight (kDa)

9.18

Isoelectric Point (pI)

65.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRIM-19	PF06212	20 - 138	1.9e-40	GRIM-19 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04630 AT2G33220 AT2G33220
fragaria_vesca	FvH4_4g05410
malus_domestica	MD13G1228700.v1.1 MD16G1234000.v1.1
prunus_persica	Prupe.1G056200_v2.0.a1
pyrus_communis	pycom13g20200 pycom16g19500
rosa_chinensis	RchiOBHm_Chr4g0396561
rosa_laevigata	RLG00000009524
rosa_multiflora	Rmu_sc0001781.1_g000004
rosa_roxburghii	Rroxscaffold_5G00341410
rosa_rugosa	Rorug03G0349200
rosa_samantha	Rh4AG069900 Rh4BG067500 Rh4CG075400 Rh4DG065300
rosa_wichuraiana	Rw4G005600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	83
AciI	CCGC	4 cut(s)	56, 74, 109, 211
AcoI	YGGCCR	2 cut(s)	141, 193
AcuI	CTGAAG	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	185, 374
AfiI	CCNNNNNNNGG	4 cut(s)	80, 83, 174, 404
AgeI	ACCGGT	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	223, 269
AjnI	CCWGG	3 cut(s)	28, 186, 195
AloI	GAACNNNNNNTCC	2 cut(s)	241, 273
AoxI	GGCC	2 cut(s)	141, 193
ApeKI	GCWGC	2 cut(s)	58, 239
AsiGI	ACCGGT	1 cut(s)	94
AspS9I	GGNCC	3 cut(s)	71, 97, 128
AsuC2I	CCSGG	2 cut(s)	81, 348
AvaII	GGWCC	3 cut(s)	71, 97, 128
BalI	TGGCCA	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	45, 226
BccI	CCATC	2 cut(s)	62, 345
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	3 cut(s)	30, 188, 197
BcnI	CCSGG	2 cut(s)	81, 348
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	3 cut(s)	56, 59, 240
BlsI	GCNGC	3 cut(s)	57, 60, 241
Bme1390I	CCNGG	5 cut(s)	30, 81, 188, 197, 348
Bme18I	GGWCC	3 cut(s)	71, 97, 128
BmgT120I	GGNCC	3 cut(s)	71, 97, 128
BmiI	GGNNCC	2 cut(s)	129, 166
BmrFI	CCNGG	5 cut(s)	30, 81, 188, 197, 348
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	414
BpuMI	CCSGG	2 cut(s)	81, 348
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 83, 174, 404
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	3 cut(s)	30, 188, 197
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	3 cut(s)	73, 356, 396
BseLI	CCNNNNNNNGG	4 cut(s)	80, 83, 174, 404
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	409
BseXI	GCAGC	2 cut(s)	45, 226
BshFI	GGCC	2 cut(s)	143, 195
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	94
BsiSI	CCGG	5 cut(s)	80, 95, 112, 347, 398
BslI	CCNNNNNNNGG	4 cut(s)	80, 83, 174, 404
BsnI	GGCC	2 cut(s)	143, 195
Bsp1407I	TGTACA	1 cut(s)	372
BspACI	CCGC	4 cut(s)	56, 74, 109, 211
BspANI	GGCC	2 cut(s)	143, 195
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	129, 166
BspT107I	GGYRCC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	409
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	196
Bst2UI	CCWGG	3 cut(s)	30, 188, 197
Bst6I	CTCTTC	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	3 cut(s)	73, 356, 396
BstNI	CCWGG	3 cut(s)	30, 188, 197
BstSCI	CCNGG	5 cut(s)	28, 79, 186, 195, 346
BstV1I	GCAGC	2 cut(s)	45, 226
BsuRI	GGCC	2 cut(s)	143, 195
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	3 cut(s)	73, 356, 396
Cac8I	GCNNGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	71, 97, 128
CpoI	CGGWCCG	1 cut(s)	97
CsiI	ACCWGGT	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	184, 373
CspAI	ACCGGT	1 cut(s)	94
CspI	CGGWCCG	1 cut(s)	97
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	5 cut(s)	28, 143, 195, 326, 401
CviKI_1	RGCY	5 cut(s)	28, 143, 195, 326, 401
CviQI	GTAC	2 cut(s)	184, 373
DdeI	CTNAG	1 cut(s)	297
DraIII	CACNNNGTG	1 cut(s)	83
EaeI	YGGCCR	2 cut(s)	141, 193
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	117
Eco47I	GGWCC	3 cut(s)	71, 97, 128
Eco57I	CTGAAG	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRII	CCWGG	3 cut(s)	28, 186, 195
EcoRV	GATATC	1 cut(s)	117
FaeI	CATG	1 cut(s)	148
FaiI	YATR	5 cut(s)	53, 105, 146, 237, 321
FatI	CATG	1 cut(s)	144
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	3 cut(s)	56, 59, 240
FokI	GGATG	3 cut(s)	80, 363, 403
Fsp4HI	GCNGC	3 cut(s)	56, 59, 240
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	3 cut(s)	56, 59, 240
HaeIII	GGCC	2 cut(s)	143, 195
HapII	CCGG	5 cut(s)	80, 95, 112, 347, 398
Hin1II	CATG	1 cut(s)	148
HpaII	CCGG	5 cut(s)	80, 95, 112, 347, 398
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	101, 298
Hpy188III	TCNNGA	3 cut(s)	65, 314, 419
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	40, 217
HpyCH4V	TGCA	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	148
Lsp1109I	GCAGC	2 cut(s)	45, 226
LweI	GCATC	1 cut(s)	381
MabI	ACCWGGT	1 cut(s)	186
MaeI	CTAG	1 cut(s)	132
MboII	GAAGA	4 cut(s)	239, 257, 287, 290
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	1 cut(s)	376
MluNI	TGGCCA	1 cut(s)	143
MnlI	CCTC	2 cut(s)	316, 405
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	5 cut(s)	80, 95, 112, 347, 398
MspR9I	CCNGG	5 cut(s)	30, 81, 188, 197, 348
MvaI	CCWGG	3 cut(s)	30, 188, 197
NciI	CCSGG	2 cut(s)	81, 348
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	129, 166
PflMI	CCANNNNNTGG	1 cut(s)	83
PfoI	TCCNGGA	1 cut(s)	346
PinAI	ACCGGT	1 cut(s)	94
PkrI	GCNGC	3 cut(s)	57, 60, 241
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	3 cut(s)	28, 186, 195
PspGI	CCWGG	3 cut(s)	28, 186, 195
PspN4I	GGNNCC	2 cut(s)	129, 166
PspPI	GGNCC	3 cut(s)	71, 97, 128
PspPPI	RGGWCCY	1 cut(s)	128
RsaI	GTAC	2 cut(s)	185, 374
RsaNI	GTAC	2 cut(s)	184, 373
Rsr2I	CGGWCCG	1 cut(s)	97
RsrII	CGGWCCG	1 cut(s)	97
SatI	GCNGC	3 cut(s)	56, 59, 240
Sau96I	GGNCC	3 cut(s)	71, 97, 128
ScrFI	CCNGG	5 cut(s)	30, 81, 188, 197, 348
SetI	ASST	2 cut(s)	192, 290
SexAI	ACCWGGT	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	381
SinI	GGWCC	3 cut(s)	71, 97, 128
Sse9I	AATT	1 cut(s)	376
SsiI	CCGC	4 cut(s)	56, 74, 109, 211
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	5 cut(s)	28, 79, 186, 195, 346
TasI	AATT	1 cut(s)	376
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	58, 239
TspDTI	ATGAA	2 cut(s)	297, 350
TspGWI	ACGGA	2 cut(s)	20, 404
Van91I	CCANNNNNTGG	1 cut(s)	83
VpaK11BI	GGWCC	3 cut(s)	71, 97, 128
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.