Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011936

Physical Location & Seq

Genomic Coordinates Reverse (-)

42592286 .. 42592632

Gene Structure 347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0349200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGACACGCACATCTGGTAGACTGCGAGATACAAGAAATGTTTCTGTTGATGAAATGGTAGCTATGTTCTTGAACATACTTGCACACCATAAAAAGAACAGAGTCATACAAGACAAGTTTTTACGTTCAGGGGAAACTATTAGCAGATACTTCAATGCAGTTTTAAAGGCAGTCTTATGTCTACAAGGACAGTTATTGAAAACACCAGAACCAGTGGCTGAGAACTCAACTGATGAGAGGTGGAAGTTTTTAAGAATTGCCTTGGAGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

GRIM-19

Protein Analysis

90

Amino Acids

10.47

Weight (kDa)

10.11

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8040	PF26138	3 - 59	1.4e-19	Domain of unknown function (DUF8040)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04630 AT2G33220 AT2G33220
fragaria_vesca	FvH4_4g05410
malus_domestica	MD13G1228700.v1.1 MD16G1234000.v1.1
prunus_persica	Prupe.1G056200_v2.0.a1
pyrus_communis	pycom13g20200 pycom16g19500
rosa_chinensis	RchiOBHm_Chr4g0396561
rosa_laevigata	RLG00000009524
rosa_multiflora	Rmu_sc0001781.1_g000004
rosa_roxburghii	Rroxscaffold_5G00341410
rosa_rugosa	Rorug03G0349200
rosa_samantha	Rh4AG069900 Rh4BG067500 Rh4CG075400 Rh4DG065300
rosa_wichuraiana	Rw4G005600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	19, 181
AgsI	TTSAA	3 cut(s)	73, 154, 199
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
AlwNI	CAGNNNCTG	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	218
CviJI	RGCY	2 cut(s)	62, 218
CviKI_1	RGCY	2 cut(s)	62, 218
DdeI	CTNAG	1 cut(s)	219
DraI	TTTAAA	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaiI	YATR	5 cut(s)	65, 77, 90, 107, 178
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FblI	GTMKAC	2 cut(s)	19, 181
HinfI	GANTC	1 cut(s)	102
Hpy166II	GTNNAC	2 cut(s)	20, 182
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	2 cut(s)	20, 182
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	83, 158
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	3 cut(s)	114, 219, 225
MaeII	ACGT	1 cut(s)	124
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	111
MnlI	CCTC	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	2 cut(s)	164, 251
PdmI	GAANNNNTTC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	164, 251
SchI	GAGTC	1 cut(s)	111
SetI	ASST	3 cut(s)	64, 127, 242
Sse9I	AATT	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	127
TasI	AATT	1 cut(s)	255
Tru1I	TTAA	2 cut(s)	164, 251
Tru9I	TTAA	2 cut(s)	164, 251
TscAI	CASTG	1 cut(s)	219
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	219
XmiI	GTMKAC	2 cut(s)	19, 181
XmnI	GAANNNNTTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.