Prupe.1G056200_v2.0.a1

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011936
Physical Location & Seq
Reverse (-)
4006368 .. 4009655
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G056200.1

Sequence Viewer

Length: 432 bp
ATGACAGAGGCAGTGATAAGAAACAAGCCAGGGATGGCGAGCGTCAAGGACATGCCGGTTCTCCAGGATGGTCCGCCGCCGGGTGGGTTCGCTCCGGTCCGATACGCTCGTCGGATCCCCAACAAGGGTCCCAGCGCAGTGGCTATTTTCTTGGCTGCCTTTGGTGCCTTCTCTTGGGGCATGTACGAGGTCGGCAAGGGCAACAAGATCCGAAGGGCCATTAAGGCTGAAAAGTATGCTGCTCGCAGAGCAATACTCCCGGTGCTTCAAGCTGAAGAAGATGAAAGATTTGTCAAAGAGTGGAAAAAGTACCTTGATTATGAGGCCGAAGTTATGAAGGATGTGCCTAATTGGAAAGTTGGTGCGAGTGTCTACAACTCTGGGAGATGGATGCCCCCAGCAACTGGCGAGTTGCGCCCTGAAGTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
GRIM-19

Protein Analysis

144

Amino Acids

16.04

Weight (kDa)

9.69

Isoelectric Point (pI)

63.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04630 AT2G33220 AT2G33220
fragaria_vesca FvH4_4g05410
malus_domestica MD13G1228700.v1.1 MD16G1234000.v1.1
prunus_persica Prupe.1G056200_v2.0.a1
pyrus_communis pycom13g20200 pycom16g19500
rosa_chinensis RchiOBHm_Chr4g0396561
rosa_laevigata RLG00000009524
rosa_multiflora Rmu_sc0001781.1_g000004
rosa_roxburghii Rroxscaffold_5G00341410
rosa_rugosa Rorug03G0349200
rosa_samantha Rh4AG069900 Rh4BG067500 Rh4CG075400 Rh4DG065300
rosa_wichuraiana Rw4G005600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccB7I CCANNNNNTGG 1 cut(s) 404
AccI GTMKAC 1 cut(s) 372
AciI CCGC 2 cut(s) 74, 77
AclWI GGATC 3 cut(s) 109, 122, 202
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 2 cut(s) 185, 311
AfiI CCNNNNNNNGG 6 cut(s) 80, 83, 124, 125, 174, 404
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 2 cut(s) 28, 63
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 3 cut(s) 109, 122, 202
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 2 cut(s) 216, 324
ApeKI GCWGC 2 cut(s) 155, 239
AspLEI GCGC 2 cut(s) 137, 417
AspS9I GGNCC 4 cut(s) 71, 97, 128, 216
AsuC2I CCSGG 2 cut(s) 81, 260
AvaII GGWCC 3 cut(s) 71, 97, 128
BaeI ACNNNNGTAYC 2 cut(s) 94, 127
BamHI GGATCC 1 cut(s) 114
BanI GGYRCC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 142, 226
BccI CCATC 3 cut(s) 28, 62, 381
BciT130I CCWGG 2 cut(s) 30, 65
BcnI CCSGG 2 cut(s) 81, 260
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 3 cut(s) 77, 156, 240
BlsI GCNGC 3 cut(s) 78, 157, 241
Bme1390I CCNGG 4 cut(s) 30, 65, 81, 260
Bme18I GGWCC 3 cut(s) 71, 97, 128
BmgT120I GGNCC 4 cut(s) 71, 97, 128, 216
BmiI GGNNCC 4 cut(s) 116, 129, 130, 166
BmrFI CCNGG 4 cut(s) 30, 65, 81, 260
BmsI GCATC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpmI CTGGAG 1 cut(s) 47
BpuMI CCSGG 2 cut(s) 81, 260
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 6 cut(s) 80, 83, 124, 125, 174, 404
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 409
BseBI CCWGG 2 cut(s) 30, 65
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 4 cut(s) 39, 73, 346, 396
BseLI CCNNNNNNNGG 6 cut(s) 80, 83, 124, 125, 174, 404
BseNI ACTGG 1 cut(s) 409
BseXI GCAGC 2 cut(s) 142, 226
BseYI CCCAGC 2 cut(s) 131, 397
BshFI GGCC 2 cut(s) 218, 326
BshNI GGYRCC 1 cut(s) 164
BsiSI CCGG 4 cut(s) 56, 80, 95, 260
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 6 cut(s) 80, 83, 124, 125, 174, 404
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 218, 326
Bsp143I GATC 2 cut(s) 114, 207
BspACI CCGC 2 cut(s) 74, 77
BspANI GGCC 2 cut(s) 218, 326
BspLI GGNNCC 4 cut(s) 116, 129, 130, 166
BspPI GGATC 3 cut(s) 109, 122, 202
BspT107I GGYRCC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 409
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 114, 207
Bst2UI CCWGG 2 cut(s) 30, 65
BstC8I GCNNGC 2 cut(s) 40, 244
BstF5I GGATG 4 cut(s) 39, 73, 346, 396
BstHHI GCGC 2 cut(s) 137, 417
BstKTI GATC 2 cut(s) 117, 210
BstMBI GATC 2 cut(s) 114, 207
BstMWI GCNNNNNNNGC 4 cut(s) 164, 224, 248, 414
BstNI CCWGG 2 cut(s) 30, 65
BstNSI RCATGY 2 cut(s) 55, 184
BstSCI CCNGG 4 cut(s) 28, 63, 79, 258
BstV1I GCAGC 2 cut(s) 142, 226
BstX2I RGATCY 2 cut(s) 114, 207
BstXI CCANNNNNNTGG 1 cut(s) 139
BstYI RGATCY 2 cut(s) 114, 207
BsuRI GGCC 2 cut(s) 218, 326
BtsCI GGATG 4 cut(s) 39, 73, 346, 396
BtsI GCAGTG 2 cut(s) 18, 144
BtsIMutI CAGTG 2 cut(s) 18, 144
Cac8I GCNNGC 2 cut(s) 40, 244
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 2 cut(s) 137, 417
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 4 cut(s) 71, 97, 128, 216
CpoI CGGWCCG 1 cut(s) 97
CseI GACGC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 184, 310
CspI CGGWCCG 1 cut(s) 97
CviAII CATG 2 cut(s) 52, 181
CviJI RGCY 7 cut(s) 28, 143, 155, 218, 227, 272, 326
CviKI_1 RGCY 7 cut(s) 28, 143, 155, 218, 227, 272, 326
CviQI GTAC 2 cut(s) 184, 310
DpnI GATC 2 cut(s) 116, 209
DpnII GATC 2 cut(s) 114, 207
EciI GGCGGA 1 cut(s) 63
Eco47I GGWCC 3 cut(s) 71, 97, 128
Eco57I CTGAAG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 28, 63
FaeI CATG 2 cut(s) 55, 184
FaiI YATR 5 cut(s) 53, 182, 237, 321, 335
FaqI GGGAC 1 cut(s) 114
FatI CATG 2 cut(s) 51, 180
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 3 cut(s) 77, 156, 240
FokI GGATG 4 cut(s) 46, 80, 353, 403
Fsp4HI GCNGC 3 cut(s) 77, 156, 240
GlaI GCGC 2 cut(s) 136, 416
GluI GCNGC 3 cut(s) 77, 156, 240
GsaI CCCAGC 2 cut(s) 135, 401
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 218, 326
HapII CCGG 4 cut(s) 56, 80, 95, 260
HgaI GACGC 1 cut(s) 31
HhaI GCGC 2 cut(s) 137, 417
Hin1II CATG 2 cut(s) 55, 184
Hin6I GCGC 2 cut(s) 135, 415
HinP1I GCGC 2 cut(s) 135, 415
HpaII CCGG 4 cut(s) 56, 80, 95, 260
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 3 cut(s) 101, 114, 212
Hpy8I GTNNAC 1 cut(s) 373
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 3 cut(s) 178, 207, 331
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 224, 248, 414
Hsp92II CATG 2 cut(s) 55, 184
HspAI GCGC 2 cut(s) 135, 415
KflI GGGWCCC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 114, 207
LmnI GCTCC 1 cut(s) 97
Lsp1109I GCAGC 2 cut(s) 142, 226
LweI GCATC 1 cut(s) 381
MalI GATC 2 cut(s) 116, 209
MboI GATC 2 cut(s) 114, 207
MboII GAAGA 2 cut(s) 287, 290
MflI RGATCY 2 cut(s) 114, 207
MluCI AATT 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 2 cut(s) 181, 316
MseI TTAA 1 cut(s) 222
MspI CCGG 4 cut(s) 56, 80, 95, 260
MspR9I CCNGG 4 cut(s) 30, 65, 81, 260
MvaI CCWGG 2 cut(s) 30, 65
MwoI GCNNNNNNNGC 4 cut(s) 164, 224, 248, 414
NciI CCSGG 2 cut(s) 81, 260
NdeII GATC 2 cut(s) 114, 207
NlaIII CATG 2 cut(s) 55, 184
NlaIV GGNNCC 4 cut(s) 116, 129, 130, 166
NspI RCATGY 2 cut(s) 55, 184
PflMI CCANNNNNTGG 1 cut(s) 404
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 3 cut(s) 78, 157, 241
PpuMI RGGWCCY 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 28, 63
PspFI CCCAGC 2 cut(s) 131, 397
PspGI CCWGG 2 cut(s) 28, 63
PspN4I GGNNCC 4 cut(s) 116, 129, 130, 166
PspPI GGNCC 4 cut(s) 71, 97, 128, 216
PspPPI RGGWCCY 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 2 cut(s) 114, 207
RsaI GTAC 2 cut(s) 185, 311
RsaNI GTAC 2 cut(s) 184, 310
Rsr2I CGGWCCG 1 cut(s) 97
RsrII CGGWCCG 1 cut(s) 97
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 3 cut(s) 77, 156, 240
Sau3AI GATC 2 cut(s) 114, 207
Sau96I GGNCC 4 cut(s) 71, 97, 128, 216
ScrFI CCNGG 4 cut(s) 30, 65, 81, 260
SetI ASST 3 cut(s) 192, 274, 315
SfaNI GCATC 1 cut(s) 381
SinI GGWCC 3 cut(s) 71, 97, 128
Sse9I AATT 1 cut(s) 349
SsiI CCGC 2 cut(s) 74, 77
StyD4I CCNGG 4 cut(s) 28, 63, 79, 258
TasI AATT 1 cut(s) 349
TauI GCSGC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 2 cut(s) 18, 144
TseI GCWGC 2 cut(s) 155, 239
TspDTI ATGAA 2 cut(s) 297, 350
TspRI CASTG 2 cut(s) 18, 144
Van91I CCANNNNNTGG 1 cut(s) 404
VpaK11BI GGWCC 3 cut(s) 71, 97, 128
XceI RCATGY 2 cut(s) 55, 184
XmiI GTMKAC 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.