Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011936

Physical Location & Seq

Genomic Coordinates Forward (+)

14078850 .. 14080743

Gene Structure 1894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGACGGAGGCGATGATAAGGAAGAAGCCAGGAATGGCGAGTGTGAAGGATATGCCGTTGCTTCAGGATGGTCCACCACCTGGTGGATTCGCGCCGGTCCGATATGCTCGCCGGATCTCCAACACGGGACCTAGCGCCATGGCTATTTTCCTTACCGTTTCCGGTGCTTTTGCTTGGGGCATGTACCAAGTTGGTCAGGGCAACAAAATCCGCAGGGCGTTGAAGGAAGAGAAGTACGCTGCACGTAGAGCAATTCTACCGATTCTTCAAGCTGAAGAAGATGAAAGGTTTGTGTCTGAGTGGAAGAAGTATCTAGAATACGAGGCGGATGTGATGAAGGATGTTCCTGGATGGAAAGTCGGTGAAAACGTGTACAATTCTGGTCGTTGGATGCCTCCAGCTACCGGAGAGCTTCGTCCTGATGTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0016020 GO:0019866 GO:0022414 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

GRIM-19

Protein Analysis

143

Amino Acids

16.12

Weight (kDa)

9.36

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRIM-19	PF06212	20 - 138	7.2e-41	GRIM-19 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04630 AT2G33220 AT2G33220
fragaria_vesca	FvH4_4g05410
malus_domestica	MD13G1228700.v1.1 MD16G1234000.v1.1
prunus_persica	Prupe.1G056200_v2.0.a1
pyrus_communis	pycom13g20200 pycom16g19500
rosa_chinensis	RchiOBHm_Chr4g0396561
rosa_laevigata	RLG00000009524
rosa_multiflora	Rmu_sc0001781.1_g000004
rosa_roxburghii	Rroxscaffold_5G00341410
rosa_rugosa	Rorug03G0349200
rosa_samantha	Rh4AG069900 Rh4BG067500 Rh4CG075400 Rh4DG065300
rosa_wichuraiana	Rw4G005600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	80, 83
AccII	CGCG	1 cut(s)	92
AciI	CCGC	2 cut(s)	211, 326
AclWI	GGATC	1 cut(s)	122
AcuI	CTGAAG	2 cut(s)	47, 294
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	3 cut(s)	185, 236, 374
AfiI	CCNNNNNNNGG	3 cut(s)	80, 83, 404
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	223, 269
AjnI	CCWGG	3 cut(s)	28, 79, 346
AluBI	AGCT	3 cut(s)	272, 401, 412
AluI	AGCT	3 cut(s)	272, 401, 412
AlwI	GGATC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	94, 137
AspS9I	GGNCC	3 cut(s)	71, 97, 128
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	3 cut(s)	71, 97, 128
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	2 cut(s)	62, 345
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	3 cut(s)	30, 81, 348
BfaI	CTAG	2 cut(s)	132, 314
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	3 cut(s)	30, 81, 348
Bme18I	GGWCC	3 cut(s)	71, 97, 128
BmgT120I	GGNCC	3 cut(s)	71, 97, 128
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	3 cut(s)	30, 81, 348
BmsI	GCATC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	2 cut(s)	161, 404
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 83, 404
Bse118I	RCCGGY	1 cut(s)	94
BseBI	CCWGG	3 cut(s)	30, 81, 348
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	5 cut(s)	73, 334, 346, 356, 396
BseLI	CCNNNNNNNGG	3 cut(s)	80, 83, 404
BseMII	CTCAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	92
BsiSI	CCGG	4 cut(s)	95, 112, 162, 405
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	3 cut(s)	80, 83, 404
BsmFI	GGGAC	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	2 cut(s)	211, 326
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	3 cut(s)	30, 81, 348
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	5 cut(s)	73, 334, 346, 356, 396
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	94, 137
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	3 cut(s)	30, 81, 348
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	3 cut(s)	28, 79, 346
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	5 cut(s)	73, 334, 346, 356, 396
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	2 cut(s)	94, 137
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	71, 97, 128
CpoI	CGGWCCG	1 cut(s)	97
CsiI	ACCWGGT	1 cut(s)	79
Csp6I	GTAC	3 cut(s)	184, 235, 373
CspI	CGGWCCG	1 cut(s)	97
CviAII	CATG	2 cut(s)	139, 181
CviJI	RGCY	5 cut(s)	28, 143, 272, 401, 412
CviKI_1	RGCY	5 cut(s)	28, 143, 272, 401, 412
CviQI	GTAC	3 cut(s)	184, 235, 373
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
DraIII	CACNNNGTG	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	3 cut(s)	71, 97, 128
Eco57I	CTGAAG	2 cut(s)	47, 294
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRII	CCWGG	3 cut(s)	28, 79, 346
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	142, 184
FaiI	YATR	4 cut(s)	53, 105, 140, 182
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	2 cut(s)	138, 180
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	5 cut(s)	80, 341, 353, 363, 403
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	132, 314
GlaI	GCGC	2 cut(s)	93, 136
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	138
HapII	CCGG	4 cut(s)	95, 112, 162, 405
HhaI	GCGC	2 cut(s)	94, 137
Hin1II	CATG	2 cut(s)	142, 184
Hin6I	GCGC	2 cut(s)	92, 135
HinP1I	GCGC	2 cut(s)	92, 135
HinfI	GANTC	2 cut(s)	87, 262
HpaII	CCGG	4 cut(s)	95, 112, 162, 405
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	74, 373
Hpy188I	TCNGA	2 cut(s)	101, 298
Hpy188III	TCNNGA	3 cut(s)	65, 314, 419
Hpy8I	GTNNAC	2 cut(s)	74, 373
HpyAV	CCTTC	3 cut(s)	40, 217, 331
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	2 cut(s)	244, 369
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	2 cut(s)	244, 369
Hsp92II	CATG	2 cut(s)	142, 184
HspAI	GCGC	2 cut(s)	92, 135
Kzo9I	GATC	1 cut(s)	114
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	381
MabI	ACCWGGT	1 cut(s)	79
MaeI	CTAG	2 cut(s)	132, 314
MaeII	ACGT	2 cut(s)	244, 369
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	6 cut(s)	34, 239, 257, 287, 290, 316
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	2 cut(s)	252, 376
MmeI	TCCRAC	2 cut(s)	144, 368
MnlI	CCTC	2 cut(s)	316, 405
MspI	CCGG	4 cut(s)	95, 112, 162, 405
MspR9I	CCNGG	3 cut(s)	30, 81, 348
MvaI	CCWGG	3 cut(s)	30, 81, 348
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	2 cut(s)	142, 184
NlaIV	GGNNCC	1 cut(s)	129
NspI	RCATGY	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	87, 262
PflMI	CCANNNNNTGG	2 cut(s)	80, 83
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	245
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	3 cut(s)	28, 79, 346
PspGI	CCWGG	3 cut(s)	28, 79, 346
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	3 cut(s)	71, 97, 128
PspPPI	RGGWCCY	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	3 cut(s)	185, 236, 374
RsaNI	GTAC	3 cut(s)	184, 235, 373
Rsr2I	CGGWCCG	1 cut(s)	97
RsrII	CGGWCCG	1 cut(s)	97
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	3 cut(s)	71, 97, 128
ScrFI	CCNGG	3 cut(s)	30, 81, 348
SetI	ASST	8 cut(s)	82, 133, 247, 274, 290, 372, 403, 414
SexAI	ACCWGGT	1 cut(s)	79
SfaNI	GCATC	1 cut(s)	381
SinI	GGWCC	3 cut(s)	71, 97, 128
Sse9I	AATT	2 cut(s)	252, 376
SsiI	CCGC	2 cut(s)	211, 326
SspMI	CTAG	2 cut(s)	132, 314
StyD4I	CCNGG	3 cut(s)	28, 79, 346
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	2 cut(s)	247, 372
TasI	AATT	2 cut(s)	252, 376
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	87, 262
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	297, 350
TspGWI	ACGGA	1 cut(s)	20
Van91I	CCANNNNNTGG	2 cut(s)	80, 83
VpaK11BI	GGWCC	3 cut(s)	71, 97, 128
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	2 cut(s)	132, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.