AT1G04690

voltage-gated potassium channel subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016125
Physical Location & Seq
Forward (+)
1313443 .. 1315823
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04690.1

Sequence Viewer

Length: 987 bp
ATGCAGTACAAGAATCTGGGGAAATCGGGTTTAAAAGTGAGCACGCTCTCGTTCGGAGCGTGGGTTACGTTCGGGAACCAGCTCGATGTGAAAGAAGCGAAATCGATTCTTCAGTGTTGTCGTGATCATGGAGTCAATTTCTTCGATAACGCTGAGGTTTACGCTAATGGTCGCGCTGAGGAGATTATGGGTCAAGCGATTCGTGAACTGGGTTGGCGTCGATCCGATATCGTCATCTCTACCAAGATCTTCTGGGGTGGTCCTGGTCCTAACGATAAGGGTTTATCTAGGAAACATATCGTTGAAGGCACTAAAGCTTCTCTCAAACGACTTGATATGGATTACGTTGATGTGCTCTATTGCCACAGGCCGGATGCTTCAACTCCTATCGAAGAGACTGTGAGGGCGATGAACTACGTGATTGATAAGGGTTGGGCCTTCTATTGGGGAACCAGTGAATGGTCAGCTCAACAAATTACGGAGGCATGGGGAGCTGCTGACCGGTTGGATTTGGTTGGTCCAATTGTCGAACAGCCAGAATACAACATGTTCGCTAGGCACAAAGTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACTACCTGGAGCCCACTTGCATCTGGTGTGCTCACTGGTAAATACAACAAGGGAGCTATTCCCTCAGACAGCCGATTTGCATTGGAGAACTACAAAAACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGTCTCAAACCCATTGCAGATGAGCTAGGTGTAACCTTGGCTCAGCTTGCAATCGCATGGTGTGCTTCAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAGATTCAAGAAAATATGAAAGCTGTTGATGTGATCCCATTGTTGACCCCTATTGTTCTGGACAAGATTGAGCAAGTGATACAGAGCAAACCAAAACGTCCTGAATCATATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

328

Amino Acids

36.54

Weight (kDa)

6.97

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 16 - 315 2.2e-65 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04690
fragaria_vesca FvH4_4g05880
malus_domestica MD13G1231200.v1.1 MD16G1235900.v1.1
prunus_persica Prupe.1G061100_v2.0.a1
pyrus_communis pycom13g20400 pycom16g19730
rosa_chinensis RchiOBHm_Chr4g0396981
rosa_laevigata RLG00000009462
rosa_multiflora Rmu_sc0002963.1_g000017 Rmu_sc0022770.1_g000004
rosa_roxburghii Rroxscaffold_5G00341970
rosa_rugosa Rorug03G0346000
rosa_samantha Rh4BG072200
rosa_wichuraiana Rw4G006080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 854
AccB7I CCANNNNNTGG 1 cut(s) 459
AccII CGCG 1 cut(s) 174
AciI CCGC 1 cut(s) 756
AclWI GGATC 2 cut(s) 216, 898
AcuI CTGAAG 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 217
AfaI GTAC 2 cut(s) 8, 590
AfiI CCNNNNNNNGG 3 cut(s) 370, 444, 459
AflIII ACRYGT 1 cut(s) 546
AgeI ACCGGT 1 cut(s) 501
AgsI TTSAA 4 cut(s) 305, 381, 825, 878
AjiI CACGTC 1 cut(s) 739
AjnI CCWGG 2 cut(s) 262, 617
AluBI AGCT 8 cut(s) 82, 317, 467, 494, 668, 781, 802, 893
AluI AGCT 8 cut(s) 82, 317, 467, 494, 668, 781, 802, 893
Alw21I GWGCWC 3 cut(s) 44, 357, 645
Alw26I GTCTC 4 cut(s) 389, 563, 614, 764
AlwI GGATC 2 cut(s) 216, 898
AoxI GGCC 2 cut(s) 368, 435
ApeKI GCWGC 1 cut(s) 494
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AsiGI ACCGGT 1 cut(s) 501
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 4 cut(s) 260, 266, 435, 518
AvaII GGWCC 3 cut(s) 260, 266, 518
BanI GGYRCC 1 cut(s) 854
BanII GRGCYC 1 cut(s) 626
Bbv12I GWGCWC 3 cut(s) 44, 357, 645
BbvCI CCTCAGC 3 cut(s) 153, 177, 743
BbvI GCAGC 1 cut(s) 481
BciT130I CCWGG 2 cut(s) 264, 619
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 4 cut(s) 389, 563, 614, 764
BfaI CTAG 3 cut(s) 288, 555, 782
BglII AGATCT 1 cut(s) 246
BisI GCNGC 1 cut(s) 495
BlpI GCTNAGC 1 cut(s) 798
BlsI GCNGC 1 cut(s) 496
Bme1390I CCNGG 2 cut(s) 264, 619
Bme18I GGWCC 3 cut(s) 260, 266, 518
BmgBI CACGTC 1 cut(s) 739
BmgT120I GGNCC 4 cut(s) 260, 266, 435, 518
BmiI GGNNCC 4 cut(s) 77, 451, 623, 856
BmrFI CCNGG 2 cut(s) 264, 619
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 364, 641
BmuI ACTGGG 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 640
Bpu10I CCTNAGC 3 cut(s) 153, 177, 743
Bpu1102I GCTNAGC 1 cut(s) 798
Bsa29I ATCGAT 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 217
BsaI GGTCTC 2 cut(s) 614, 764
BsaJI CCNNGG 2 cut(s) 598, 792
BsaWI WCCGGW 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 3 cut(s) 370, 444, 459
Bse118I RCCGGY 1 cut(s) 501
Bse1I ACTGG 4 cut(s) 213, 453, 652, 856
Bse3DI GCAATG 1 cut(s) 768
BseBI CCWGG 2 cut(s) 264, 619
BseCI ATCGAT 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 598, 792
BseGI GGATG 2 cut(s) 379, 739
BseLI CCNNNNNNNGG 3 cut(s) 370, 444, 459
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 5 cut(s) 144, 168, 690, 734, 812
BseNI ACTGG 4 cut(s) 213, 453, 652, 856
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 481
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 370, 437
BshNI GGYRCC 1 cut(s) 854
BshTI ACCGGT 1 cut(s) 501
BshVI ATCGAT 1 cut(s) 104
BsiHKAI GWGCWC 3 cut(s) 44, 357, 645
BsiSI CCGG 2 cut(s) 371, 502
BslI CCNNNNNNNGG 3 cut(s) 370, 444, 459
BsmAI GTCTC 4 cut(s) 389, 563, 614, 764
BsnI GGCC 2 cut(s) 370, 437
Bso31I GGTCTC 2 cut(s) 614, 764
Bsp1286I GDGCHC 4 cut(s) 44, 357, 626, 645
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 5 cut(s) 124, 221, 246, 722, 903
Bsp1720I GCTNAGC 1 cut(s) 798
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 1 cut(s) 756
BspANI GGCC 2 cut(s) 370, 437
BspCNI CTCAG 5 cut(s) 145, 169, 689, 735, 811
BspDI ATCGAT 1 cut(s) 104
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 4 cut(s) 77, 451, 623, 856
BspPI GGATC 2 cut(s) 216, 898
BspT107I GGYRCC 1 cut(s) 854
BspTNI GGTCTC 2 cut(s) 614, 764
BsrDI GCAATG 1 cut(s) 768
BsrFI RCCGGY 1 cut(s) 501
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 4 cut(s) 213, 453, 652, 856
BssAI RCCGGY 1 cut(s) 501
BssECI CCNNGG 2 cut(s) 598, 792
BssMI GATC 5 cut(s) 124, 221, 246, 722, 903
BssNI GRCGYC 1 cut(s) 217
BssT1I CCWWGG 2 cut(s) 598, 792
Bst2UI CCWGG 2 cut(s) 264, 619
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 217
BstAPI GCANNNNNTGC 1 cut(s) 818
BstAUI TGTACA 1 cut(s) 588
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 44, 804
BstDEI CTNAG 5 cut(s) 153, 177, 676, 743, 798
BstDSI CCRYGG 1 cut(s) 598
BstF5I GGATG 2 cut(s) 379, 739
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 5 cut(s) 127, 224, 249, 725, 906
BstMAI GTCTC 4 cut(s) 389, 563, 614, 764
BstMBI GATC 5 cut(s) 124, 221, 246, 722, 903
BstMWI GCNNNNNNNGC 3 cut(s) 491, 803, 818
BstNI CCWGG 2 cut(s) 264, 619
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 2 cut(s) 262, 617
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
Bsu15I ATCGAT 1 cut(s) 104
BsuRI GGCC 2 cut(s) 370, 437
BsuTUI ATCGAT 1 cut(s) 104
BtgI CCRYGG 1 cut(s) 598
BtgZI GCGATG 1 cut(s) 422
BtrI CACGTC 1 cut(s) 739
BtsCI GGATG 2 cut(s) 379, 739
BtsIMutI CAGTG 4 cut(s) 119, 460, 645, 849
Cac8I GCNNGC 2 cut(s) 44, 804
CfoI GCGC 1 cut(s) 176
Cfr10I RCCGGY 1 cut(s) 501
Cfr13I GGNCC 4 cut(s) 260, 266, 435, 518
ClaI ATCGAT 1 cut(s) 104
CseI GACGC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 7, 589
CspAI ACCGGT 1 cut(s) 501
CviAII CATG 5 cut(s) 128, 486, 547, 599, 813
CviQI GTAC 2 cut(s) 7, 589
DdeI CTNAG 5 cut(s) 153, 177, 676, 743, 798
DpnI GATC 5 cut(s) 126, 223, 248, 724, 905
DpnII GATC 5 cut(s) 124, 221, 246, 722, 903
DraI TTTAAA 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 2 cut(s) 598, 792
Eco24I GRGCYC 1 cut(s) 626
Eco31I GGTCTC 2 cut(s) 614, 764
Eco32I GATATC 1 cut(s) 229
Eco47I GGWCC 3 cut(s) 260, 266, 518
Eco57I CTGAAG 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 262, 617
EcoRV GATATC 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 598, 792
EcoT38I GRGCYC 1 cut(s) 626
ErhI CCWWGG 2 cut(s) 598, 792
FaeI CATG 5 cut(s) 131, 489, 550, 602, 816
FatI CATG 5 cut(s) 127, 485, 546, 598, 812
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 2 cut(s) 386, 746
FriOI GRGCYC 1 cut(s) 626
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 3 cut(s) 288, 555, 782
GlaI GCGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 495
GsuI CTGGAG 1 cut(s) 640
HaeIII GGCC 2 cut(s) 370, 437
HapII CCGG 2 cut(s) 371, 502
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 5 cut(s) 131, 489, 550, 602, 816
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 915
HindII GTYRAC 1 cut(s) 915
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 7 cut(s) 13, 106, 132, 199, 866, 874, 974
HpaII CCGG 2 cut(s) 371, 502
Hpy166II GTNNAC 4 cut(s) 160, 206, 591, 915
Hpy188I TCNGA 3 cut(s) 56, 226, 679
Hpy188III TCNNGA 6 cut(s) 73, 122, 203, 878, 929, 971
Hpy8I GTNNAC 4 cut(s) 160, 206, 591, 915
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 299, 448
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 5 cut(s) 68, 345, 417, 738, 967
HpyCH4V TGCA 5 cut(s) 4, 632, 692, 773, 806
HpyF10VI GCNNNNNNNGC 3 cut(s) 491, 803, 818
HpyF3I CTNAG 5 cut(s) 153, 177, 676, 743, 798
HpySE526I ACGT 5 cut(s) 68, 345, 417, 738, 967
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 5 cut(s) 131, 489, 550, 602, 816
HspAI GCGC 1 cut(s) 174
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 5 cut(s) 124, 221, 246, 722, 903
LmnI GCTCC 4 cut(s) 56, 491, 621, 665
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 2 cut(s) 364, 641
MaeI CTAG 3 cut(s) 288, 555, 782
MaeII ACGT 5 cut(s) 68, 345, 417, 738, 967
MaeIII GTNAC 3 cut(s) 64, 787, 867
MalI GATC 5 cut(s) 126, 223, 248, 724, 905
MboI GATC 5 cut(s) 124, 221, 246, 722, 903
MboII GAAGA 5 cut(s) 101, 133, 241, 404, 572
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 1 cut(s) 246
MhlI GDGCHC 4 cut(s) 44, 357, 626, 645
MluCI AATT 3 cut(s) 136, 474, 522
MlyI GAGTC 2 cut(s) 141, 875
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 7 cut(s) 148, 172, 396, 475, 594, 685, 738
MseI TTAA 1 cut(s) 32
MspI CCGG 2 cut(s) 371, 502
MspR9I CCNGG 2 cut(s) 264, 619
MunI CAATTG 1 cut(s) 522
MvaI CCWGG 2 cut(s) 264, 619
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 491, 803, 818
NcoI CCATGG 1 cut(s) 598
NdeII GATC 5 cut(s) 124, 221, 246, 722, 903
NlaIII CATG 5 cut(s) 131, 489, 550, 602, 816
NlaIV GGNNCC 4 cut(s) 77, 451, 623, 856
NmuCI GTSAC 1 cut(s) 867
NspI RCATGY 1 cut(s) 550
PciI ACATGT 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PfeI GAWTC 5 cut(s) 13, 106, 199, 874, 974
PflMI CCANNNNNTGG 1 cut(s) 459
PinAI ACCGGT 1 cut(s) 501
PkrI GCNGC 1 cut(s) 496
PleI GAGTC 2 cut(s) 140, 874
PpsI GAGTC 2 cut(s) 140, 874
Ppu21I YACGTR 1 cut(s) 418
PscI ACATGT 1 cut(s) 546
Psp6I CCWGG 2 cut(s) 262, 617
PspGI CCWGG 2 cut(s) 262, 617
PspN4I GGNNCC 4 cut(s) 77, 451, 623, 856
PspPI GGNCC 4 cut(s) 260, 266, 435, 518
PsuI RGATCY 1 cut(s) 246
RsaI GTAC 2 cut(s) 8, 590
RsaNI GTAC 2 cut(s) 7, 589
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 5 cut(s) 124, 221, 246, 722, 903
Sau96I GGNCC 4 cut(s) 260, 266, 435, 518
SchI GAGTC 2 cut(s) 141, 875
ScrFI CCNGG 2 cut(s) 264, 619
SduI GDGCHC 4 cut(s) 44, 357, 626, 645
SfaNI GCATC 2 cut(s) 364, 641
SinI GGWCC 3 cut(s) 260, 266, 518
Sse9I AATT 3 cut(s) 136, 474, 522
SsiI CCGC 1 cut(s) 756
SspMI CTAG 3 cut(s) 288, 555, 782
StyD4I CCNGG 2 cut(s) 262, 617
StyI CCWWGG 2 cut(s) 598, 792
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 5 cut(s) 71, 348, 420, 741, 970
TaqI TCGA 6 cut(s) 84, 104, 144, 220, 390, 528
TasI AATT 3 cut(s) 136, 474, 522
TatI WGTACW 2 cut(s) 6, 588
TfiI GAWTC 5 cut(s) 13, 106, 199, 874, 974
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 4 cut(s) 119, 460, 652, 856
TseFI GTSAC 1 cut(s) 867
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 1 cut(s) 867
TspDTI ATGAA 2 cut(s) 425, 902
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 4 cut(s) 119, 460, 652, 856
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 3 cut(s) 260, 266, 518
XceI RCATGY 1 cut(s) 550
XspI CTAG 3 cut(s) 288, 555, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.