pycom13g20400

voltage-gated potassium channel subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
16469584 .. 16474496
4913 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g20400.3

Sequence Viewer

Length: 1002 bp
ATGGCGTCGAACAATATGCAGTACAAGAACCTCGGCCGCTCGGGCCTCAAAGTGAGCCAGCTCTCCTATGGCGCATGGGTCAGCTTCGGCAACCAGCTCGACGTCAAGGAGGCCAAGTCCATCCTCCAGACCTGCCGCGACCACGGCGTCAACTTCTTCGACAACGCCGAGGTCTACGCCTCCGGCCGCGCCGAGGAGATCATGGGCCAGGCCATCCGCGAGCTCGGCTGGAAGCGCTCCGACGTCGTCATTTCCACCAAGATCTTCTGGGGCGGGCCAGGCCCCAACGACAAGGGCCTGTCGCGGAAGCACATCGTCGAGGGCACCAAGGCGTCGCTGAAGCGCCTGGACATGGAGTACGTGGATCTCATCTACTGCCACCGCCCGGACGCGACGACGCCGATCGAGGAGACGGTGAGGGCGATGAACTACGTGATCGATAAAGGGTGGGCGTTTTATTGGGGGACGAGTGAGTGGTCGGCGCAGCAGATCACGGATGCGTGGGGGATCGCCGAGAGGTTGGATTTGGTGGGGCCCATTGTTGAGCAGCCTGAGTACAATTTGCTCTCTAGGCACAAGGTCGAGACTGAGTTCCTCCCACTGTATACCAACTATGGCCTGGGTCTTACCACTTTTAGTCCACTTGCTTCTGGTGTTCTTACTGGAAAATATACCAAGGGAAATATACCTCCTGATAGCCGATTTGCGTTGGACAGTTACAAAAATCTTGCTAGTCGAAAACTGGTTGATGACGTGCTGCAAAAAGTTAATGGTCTTAAGCCAATTGCAGATGAATTAGGTGTACCATTAGCTCAACTAGCAATTGCATGGTGTGCTGCTAATCCGAATGTCTCGTCAGTTATTACTGGTGCTACAAAGGAGTCCCAGGTTCAAGAGAACATGAAAGCTGTAGATGTAATCCCTCTATTAACTCCCGCTGTCATGGAAAAGATTGAGGCTGTTGTTCAAAGCAAGCAAAAGCGTCCAGAATGCGTAAGGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

334

Amino Acids

36.93

Weight (kDa)

6.91

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04690
fragaria_vesca FvH4_4g05880
malus_domestica MD13G1231200.v1.1 MD16G1235900.v1.1
prunus_persica Prupe.1G061100_v2.0.a1
pyrus_communis pycom13g20400 pycom16g19730
rosa_chinensis RchiOBHm_Chr4g0396981
rosa_laevigata RLG00000009462
rosa_multiflora Rmu_sc0002963.1_g000017 Rmu_sc0022770.1_g000004
rosa_roxburghii Rroxscaffold_5G00341970
rosa_rugosa Rorug03G0346000
rosa_samantha Rh4BG072200
rosa_wichuraiana Rw4G006080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AatII GACGTC 2 cut(s) 105, 246
Acc36I ACCTGC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 323
AccBSI CCGCTC 1 cut(s) 39
AccI GTMKAC 2 cut(s) 174, 605
AccII CGCG 5 cut(s) 138, 189, 219, 304, 392
AciI CCGC 8 cut(s) 37, 136, 187, 217, 273, 304, 382, 936
AclWI GGATC 2 cut(s) 372, 515
AcoI YGGCCR 2 cut(s) 34, 184
AcuI CTGAAG 1 cut(s) 359
AcyI GRCGYC 6 cut(s) 5, 102, 147, 243, 332, 398
AfaI GTAC 4 cut(s) 23, 359, 557, 804
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 3 cut(s) 193, 352, 385
AflII CTTAAG 1 cut(s) 776
AgsI TTSAA 2 cut(s) 893, 968
AjiI CACGTC 1 cut(s) 754
AjnI CCWGG 5 cut(s) 207, 277, 345, 618, 885
AluBI AGCT 6 cut(s) 61, 84, 97, 223, 812, 908
AluI AGCT 6 cut(s) 61, 84, 97, 223, 812, 908
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 3 cut(s) 404, 578, 856
AlwI GGATC 2 cut(s) 372, 515
Ama87I CYCGRG 1 cut(s) 40
Aor51HI AGCGCT 1 cut(s) 236
ApaI GGGCCC 1 cut(s) 537
ApeKI GCWGC 4 cut(s) 484, 547, 757, 836
ArsI GACNNNNNNTTYG 2 cut(s) 839, 871
AspLEI GCGC 5 cut(s) 74, 191, 237, 345, 484
AspS9I GGNCC 7 cut(s) 43, 205, 275, 281, 295, 533, 534
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 40
BaeGI GKGCMC 2 cut(s) 326, 537
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 2 cut(s) 225, 537
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 4 cut(s) 496, 559, 744, 823
BccI CCATC 2 cut(s) 128, 221
BceAI ACGGC 1 cut(s) 160
BcgI CGANNNNNNTGC 3 cut(s) 32, 79, 113
BciT130I CCWGG 5 cut(s) 209, 279, 347, 620, 887
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 3 cut(s) 404, 578, 856
BfaI CTAG 3 cut(s) 570, 732, 818
BfmI CTRYAG 1 cut(s) 909
BfoI RGCGCY 2 cut(s) 238, 346
BfrI CTTAAG 1 cut(s) 776
BfuAI ACCTGC 1 cut(s) 140
BglI GCCNNNNNGGC 1 cut(s) 42
BglII AGATCT 1 cut(s) 261
BisI GCNGC 7 cut(s) 37, 136, 187, 485, 548, 758, 837
BlsI GCNGC 7 cut(s) 38, 137, 188, 486, 549, 759, 838
Bme1390I CCNGG 6 cut(s) 209, 279, 347, 386, 620, 887
BmeT110I CYCGRG 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 754
BmgT120I GGNCC 7 cut(s) 43, 205, 275, 281, 295, 533, 534
BmiI GGNNCC 4 cut(s) 283, 325, 534, 535
BmrFI CCNGG 6 cut(s) 209, 279, 347, 386, 620, 887
BmsI GCATC 1 cut(s) 487
BpmI CTGGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 438
BsaAI YACGTR 2 cut(s) 361, 433
BsaHI GRCGYC 6 cut(s) 5, 102, 147, 243, 332, 398
BsaJI CCNNGG 8 cut(s) 31, 142, 168, 192, 327, 619, 675, 885
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 352, 385
Bse1I ACTGG 3 cut(s) 667, 747, 871
BseBI CCWGG 5 cut(s) 209, 279, 347, 620, 887
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 8 cut(s) 31, 142, 168, 192, 327, 619, 675, 885
BseGI GGATG 3 cut(s) 120, 213, 502
BseLI CCNNNNNNNGG 3 cut(s) 193, 352, 385
BseMII CTCAG 2 cut(s) 543, 579
BseNI ACTGG 3 cut(s) 667, 747, 871
BseRI GAGGAG 2 cut(s) 209, 422
BseSI GKGCMC 2 cut(s) 326, 537
BseX3I CGGCCG 2 cut(s) 34, 184
BseXI GCAGC 4 cut(s) 496, 559, 744, 823
Bsh1236I CGCG 5 cut(s) 138, 189, 219, 304, 392
Bsh1285I CGRYCG 3 cut(s) 37, 187, 405
BshNI GGYRCC 1 cut(s) 323
BshVI ATCGAT 1 cut(s) 438
BsiEI CGRYCG 3 cut(s) 37, 187, 405
BsiHKAI GWGCWC 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 2 cut(s) 183, 386
BslFI GGGAC 2 cut(s) 478, 868
BslI CCNNNNNNNGG 3 cut(s) 193, 352, 385
BsmAI GTCTC 3 cut(s) 404, 578, 856
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 2 cut(s) 478, 868
BsmI GAATGC 1 cut(s) 995
BsoBI CYCGRG 1 cut(s) 40
Bsp120I GGGCCC 1 cut(s) 533
Bsp1286I GDGCHC 3 cut(s) 225, 326, 537
Bsp143I GATC 7 cut(s) 198, 261, 364, 402, 435, 489, 507
BspACI CCGC 8 cut(s) 37, 136, 187, 217, 273, 304, 382, 936
BspCNI CTCAG 2 cut(s) 544, 580
BspDI ATCGAT 1 cut(s) 438
BspFNI CGCG 5 cut(s) 138, 189, 219, 304, 392
BspLI GGNNCC 4 cut(s) 283, 325, 534, 535
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 2 cut(s) 372, 515
BspT107I GGYRCC 1 cut(s) 323
BspTI CTTAAG 1 cut(s) 776
BsrBI CCGCTC 1 cut(s) 39
BsrI ACTGG 3 cut(s) 667, 747, 871
BssECI CCNNGG 8 cut(s) 31, 142, 168, 192, 327, 619, 675, 885
BssMI GATC 7 cut(s) 198, 261, 364, 402, 435, 489, 507
BssNAI GTATAC 1 cut(s) 606
BssNI GRCGYC 6 cut(s) 5, 102, 147, 243, 332, 398
BssT1I CCWWGG 2 cut(s) 327, 675
Bst1107I GTATAC 1 cut(s) 606
Bst2UI CCWGG 5 cut(s) 209, 279, 347, 620, 887
Bst4CI ACNGT 3 cut(s) 415, 603, 716
BstACI GRCGYC 6 cut(s) 5, 102, 147, 243, 332, 398
BstAFI CTTAAG 1 cut(s) 776
BstAPI GCANNNNNTGC 1 cut(s) 833
BstBAI YACGTR 2 cut(s) 361, 433
BstC8I GCNNGC 4 cut(s) 59, 221, 275, 974
BstDEI CTNAG 2 cut(s) 552, 588
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 3 cut(s) 120, 213, 502
BstFNI CGCG 5 cut(s) 138, 189, 219, 304, 392
BstH2I RGCGCY 2 cut(s) 238, 346
BstHHI GCGC 5 cut(s) 74, 191, 237, 345, 484
BstKTI GATC 7 cut(s) 201, 264, 367, 405, 438, 492, 510
BstMAI GTCTC 3 cut(s) 404, 578, 856
BstMBI GATC 7 cut(s) 198, 261, 364, 402, 435, 489, 507
BstMCI CGRYCG 3 cut(s) 37, 187, 405
BstMWI GCNNNNNNNGC 8 cut(s) 42, 144, 225, 234, 279, 571, 818, 833
BstNI CCWGG 5 cut(s) 209, 279, 347, 620, 887
BstSCI CCNGG 6 cut(s) 207, 277, 345, 384, 618, 885
BstSFI CTRYAG 1 cut(s) 909
BstSLI GKGCMC 2 cut(s) 326, 537
BstUI CGCG 5 cut(s) 138, 189, 219, 304, 392
BstV1I GCAGC 4 cut(s) 496, 559, 744, 823
BstX2I RGATCY 2 cut(s) 261, 364
BstYI RGATCY 2 cut(s) 261, 364
BstZ17I GTATAC 1 cut(s) 606
BstZI CGGCCG 2 cut(s) 34, 184
Bsu15I ATCGAT 1 cut(s) 438
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 437
BtrI CACGTC 1 cut(s) 754
BtsCI GGATG 3 cut(s) 120, 213, 502
BtsIMutI CAGTG 1 cut(s) 599
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 4 cut(s) 59, 221, 275, 974
CfoI GCGC 5 cut(s) 74, 191, 237, 345, 484
Cfr13I GGNCC 7 cut(s) 43, 205, 275, 281, 295, 533, 534
ClaI ATCGAT 1 cut(s) 438
CseI GACGC 5 cut(s) 136, 321, 398, 406, 971
Csp6I GTAC 4 cut(s) 22, 358, 556, 803
CviAII CATG 6 cut(s) 75, 202, 352, 828, 901, 943
CviQI GTAC 4 cut(s) 22, 358, 556, 803
DdeI CTNAG 2 cut(s) 552, 588
DpnI GATC 7 cut(s) 200, 263, 366, 404, 437, 491, 509
DpnII GATC 7 cut(s) 198, 261, 364, 402, 435, 489, 507
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 2 cut(s) 34, 184
EagI CGGCCG 2 cut(s) 34, 184
Ecl136II GAGCTC 1 cut(s) 223
EclXI CGGCCG 2 cut(s) 34, 184
Eco130I CCWWGG 2 cut(s) 327, 675
Eco24I GRGCYC 2 cut(s) 225, 537
Eco47III AGCGCT 1 cut(s) 236
Eco52I CGGCCG 2 cut(s) 34, 184
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 359
Eco88I CYCGRG 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 223
EcoO109I RGGNCCY 3 cut(s) 281, 295, 533
EcoRII CCWGG 5 cut(s) 207, 277, 345, 618, 885
EcoT14I CCWWGG 2 cut(s) 327, 675
EcoT38I GRGCYC 2 cut(s) 225, 537
ErhI CCWWGG 2 cut(s) 327, 675
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 6 cut(s) 78, 205, 355, 831, 904, 946
FaqI GGGAC 2 cut(s) 478, 868
FatI CATG 6 cut(s) 74, 201, 351, 827, 900, 942
FauI CCCGC 2 cut(s) 266, 943
FblI GTMKAC 2 cut(s) 174, 605
Fnu4HI GCNGC 7 cut(s) 37, 136, 187, 485, 548, 758, 837
FokI GGATG 3 cut(s) 107, 200, 509
FriOI GRGCYC 2 cut(s) 225, 537
Fsp4HI GCNGC 7 cut(s) 37, 136, 187, 485, 548, 758, 837
FspBI CTAG 3 cut(s) 570, 732, 818
GlaI GCGC 5 cut(s) 73, 190, 236, 344, 483
GluI GCNGC 7 cut(s) 37, 136, 187, 485, 548, 758, 837
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 2 cut(s) 238, 346
HapII CCGG 2 cut(s) 183, 386
HgaI GACGC 5 cut(s) 136, 321, 398, 406, 971
HhaI GCGC 5 cut(s) 74, 191, 237, 345, 484
Hin1I GRCGYC 6 cut(s) 5, 102, 147, 243, 332, 398
Hin1II CATG 6 cut(s) 78, 205, 355, 831, 904, 946
Hin6I GCGC 5 cut(s) 72, 189, 235, 343, 482
HinP1I GCGC 5 cut(s) 72, 189, 235, 343, 482
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 1 cut(s) 881
HpaII CCGG 2 cut(s) 183, 386
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 5 cut(s) 151, 175, 606, 641, 803
Hpy188I TCNGA 2 cut(s) 241, 846
Hpy188III TCNNGA 5 cut(s) 127, 583, 692, 893, 986
Hpy8I GTNNAC 5 cut(s) 151, 175, 606, 641, 803
Hpy99I CGWCG 8 cut(s) 10, 104, 245, 248, 320, 337, 397, 400
HpyCH4III ACNGT 3 cut(s) 415, 603, 716
HpyCH4IV ACGT 5 cut(s) 102, 243, 360, 432, 753
HpyCH4V TGCA 4 cut(s) 19, 760, 788, 827
HpyF10VI GCNNNNNNNGC 8 cut(s) 42, 144, 225, 234, 279, 571, 818, 833
HpyF3I CTNAG 2 cut(s) 552, 588
HpySE526I ACGT 5 cut(s) 102, 243, 360, 432, 753
Hsp92I GRCGYC 6 cut(s) 5, 102, 147, 243, 332, 398
Hsp92II CATG 6 cut(s) 78, 205, 355, 831, 904, 946
HspAI GCGC 5 cut(s) 72, 189, 235, 343, 482
Kzo9I GATC 7 cut(s) 198, 261, 364, 402, 435, 489, 507
LmnI GCTCC 1 cut(s) 242
Lsp1109I GCAGC 4 cut(s) 496, 559, 744, 823
LweI GCATC 1 cut(s) 487
MaeI CTAG 3 cut(s) 570, 732, 818
MaeII ACGT 5 cut(s) 102, 243, 360, 432, 753
MaeIII GTNAC 1 cut(s) 716
MalI GATC 7 cut(s) 200, 263, 366, 404, 437, 491, 509
MbiI CCGCTC 1 cut(s) 39
MboI GATC 7 cut(s) 198, 261, 364, 402, 435, 489, 507
MboII GAAGA 2 cut(s) 148, 256
MfeI CAATTG 2 cut(s) 783, 822
MflI RGATCY 2 cut(s) 261, 364
MhlI GDGCHC 3 cut(s) 225, 326, 537
MluCI AATT 4 cut(s) 559, 783, 794, 822
MlyI GAGTC 1 cut(s) 890
MmeI TCCRAC 3 cut(s) 264, 501, 690
MseI TTAA 3 cut(s) 768, 777, 929
MspA1I CMGCKG 1 cut(s) 938
MspCI CTTAAG 1 cut(s) 776
MspI CCGG 2 cut(s) 183, 386
MspR9I CCNGG 6 cut(s) 209, 279, 347, 386, 620, 887
MunI CAATTG 2 cut(s) 783, 822
Mva1269I GAATGC 1 cut(s) 995
MvaI CCWGG 5 cut(s) 209, 279, 347, 620, 887
MvnI CGCG 5 cut(s) 138, 189, 219, 304, 392
MwoI GCNNNNNNNGC 8 cut(s) 42, 144, 225, 234, 279, 571, 818, 833
NciI CCSGG 1 cut(s) 386
NdeII GATC 7 cut(s) 198, 261, 364, 402, 435, 489, 507
NlaIII CATG 6 cut(s) 78, 205, 355, 831, 904, 946
NlaIV GGNNCC 4 cut(s) 283, 325, 534, 535
NmeAIII GCCGAG 5 cut(s) 12, 193, 204, 217, 538
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 419
PctI GAATGC 1 cut(s) 995
PflFI GACNNNGTC 1 cut(s) 245
PkrI GCNGC 7 cut(s) 38, 137, 188, 486, 549, 759, 838
Ple19I CGATCG 1 cut(s) 405
PleI GAGTC 1 cut(s) 889
PpsI GAGTC 1 cut(s) 889
Ppu21I YACGTR 2 cut(s) 361, 433
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 5 cut(s) 207, 277, 345, 618, 885
PspGI CCWGG 5 cut(s) 207, 277, 345, 618, 885
PspN4I GGNNCC 4 cut(s) 283, 325, 534, 535
PspOMI GGGCCC 1 cut(s) 533
PspPI GGNCC 7 cut(s) 43, 205, 275, 281, 295, 533, 534
PsuI RGATCY 2 cut(s) 261, 364
PsyI GACNNNGTC 1 cut(s) 245
PvuI CGATCG 1 cut(s) 405
RsaI GTAC 4 cut(s) 23, 359, 557, 804
RsaNI GTAC 4 cut(s) 22, 358, 556, 803
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 3 cut(s) 768, 777, 929
SatI GCNGC 7 cut(s) 37, 136, 187, 485, 548, 758, 837
Sau3AI GATC 7 cut(s) 198, 261, 364, 402, 435, 489, 507
Sau96I GGNCC 7 cut(s) 43, 205, 275, 281, 295, 533, 534
SchI GAGTC 1 cut(s) 890
ScrFI CCNGG 6 cut(s) 209, 279, 347, 386, 620, 887
SduI GDGCHC 3 cut(s) 225, 326, 537
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 1 cut(s) 909
SfiI GGCCNNNNNGGCC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 776
SmoI CTYRAG 1 cut(s) 776
Sse9I AATT 4 cut(s) 559, 783, 794, 822
SsiI CCGC 8 cut(s) 37, 136, 187, 217, 273, 304, 382, 936
SspMI CTAG 3 cut(s) 570, 732, 818
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 6 cut(s) 207, 277, 345, 384, 618, 885
StyI CCWWGG 2 cut(s) 327, 675
TaaI ACNGT 3 cut(s) 415, 603, 716
TaiI ACGT 5 cut(s) 105, 246, 363, 435, 756
TaqI TCGA 8 cut(s) 8, 99, 159, 318, 405, 438, 582, 736
TasI AATT 4 cut(s) 559, 783, 794, 822
TatI WGTACW 2 cut(s) 21, 555
TauI GCSGC 3 cut(s) 39, 138, 189
Tru1I TTAA 3 cut(s) 768, 777, 929
Tru9I TTAA 3 cut(s) 768, 777, 929
TscAI CASTG 1 cut(s) 606
TseI GCWGC 4 cut(s) 484, 547, 757, 836
TspDTI ATGAA 3 cut(s) 440, 807, 917
TspGWI ACGGA 1 cut(s) 509
TspRI CASTG 1 cut(s) 606
Tth111I GACNNNGTC 1 cut(s) 245
Vha464I CTTAAG 1 cut(s) 776
XcmI CCANNNNNNNNNTGG 2 cut(s) 65, 616
XmiI GTMKAC 2 cut(s) 174, 605
XspI CTAG 3 cut(s) 570, 732, 818
ZraI GACGTC 2 cut(s) 103, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.