Rh4BG072200

voltage-gated potassium channel subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016125
Physical Location & Seq
Forward (+)
12713985 .. 12718196
4212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG072200.1

Sequence Viewer

Length: 918 bp
ATGACGTCATCAAACATGATTTACAACAACCTGGGCCGGTCGGGGCTGAAGGTGAGCCAGCTGTCGTACGGCGCGTGGGTGAGCTTCGGGAACCAGCTGGACGTGAAGGAGGCGAAGTCGCTGCTCCAGTGCTGCCGCGACCACGGCGTCAACTTCTTCGACAACGCCGAGGTCTACGCGAGCGGCCGCGCCGAGGAGATCATGGGCCAGGCCATACGCGAGCTGGGCTGGAAGCGCTCCGACATCGTCGTCTCCACCAAGATCTTCTGGGGCGGGCCCGGCCCAAACGACAAGGGCCTCTCCCGGAAGCACGTCGTCGAGGGCACCAAGGCCTCCCTCAAGAGGCTCGACATGGAGTACGTGGACCTCATCTACTGTCACCGGCCGGACTCCACCACGCCGATCGAGGAGACCGTCAGGGCTATGAATTATGTGATTGATAAGGGCTGGGCTTTTTATTGGGGCACCAGTGAGTGGTCGGCCCAGCAGATCACCGAGGCTTGGGGAATTGCTGACAAGTTGGATTTGGTTGGTCCGATTGTGGAGCAGCCGGAGTATAACTTGTTGTCCAGGCACAAGGTTGAGTCTGAGTTCCTCCCATTATACAGCAACTATGGCCTGGGTCTTACCACCTGGAGCCCACTTGCTTCTGGTGTGCTCACCGGAAAATATAACAAGGGAAATATACCACCTGATAGCCGATTTGCATTGGAGAACTACAAAAATCTAGCCAGTAGGTCACTGGTTGATGACGTGCTGAAGAAGGTTAATGGTCTGAAGCCAATTGCAGATGAGTTAGGTGTGCCACTATCTCAACTTGCAATAGCCTGGTGTGCTGCTAATCCTAATGTGTCATCAGTTATTACTGGTGCTACAAAGGAATCCCAGGTTAGTTTTCAAATTTGCACATCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

305

Amino Acids

33.74

Weight (kDa)

6.14

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 21 - 297 7.2e-59 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04690
fragaria_vesca FvH4_4g05880
malus_domestica MD13G1231200.v1.1 MD16G1235900.v1.1
prunus_persica Prupe.1G061100_v2.0.a1
pyrus_communis pycom13g20400 pycom16g19730
rosa_chinensis RchiOBHm_Chr4g0396981
rosa_laevigata RLG00000009462
rosa_multiflora Rmu_sc0002963.1_g000017 Rmu_sc0022770.1_g000004
rosa_roxburghii Rroxscaffold_5G00341970
rosa_rugosa Rorug03G0346000
rosa_samantha Rh4BG072200
rosa_wichuraiana Rw4G006080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 146, 248
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 2 cut(s) 323, 464
AccB7I CCANNNNNTGG 1 cut(s) 474
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 174
AccII CGCG 5 cut(s) 74, 138, 179, 189, 219
AciI CCGC 4 cut(s) 136, 183, 187, 273
AcoI YGGCCR 2 cut(s) 184, 383
AcsI RAATTY 1 cut(s) 900
AcuI CTGAAG 3 cut(s) 68, 779, 797
AcyI GRCGYC 2 cut(s) 5, 147
AfaI GTAC 2 cut(s) 68, 359
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 4 cut(s) 193, 342, 474, 501
AgsI TTSAA 1 cut(s) 899
AjiI CACGTC 3 cut(s) 103, 313, 754
AjnI CCWGG 7 cut(s) 30, 207, 569, 618, 632, 827, 885
AluBI AGCT 4 cut(s) 61, 84, 97, 223
AluI AGCT 4 cut(s) 61, 84, 97, 223
Alw21I GWGCWC 1 cut(s) 660
Alw26I GTCTC 2 cut(s) 256, 404
Aor51HI AGCGCT 1 cut(s) 236
ApaI GGGCCC 1 cut(s) 279
ApeKI GCWGC 4 cut(s) 121, 132, 547, 836
ApoI RAATTY 1 cut(s) 900
AspLEI GCGC 3 cut(s) 74, 191, 237
AspS9I GGNCC 9 cut(s) 34, 205, 275, 276, 281, 295, 364, 481, 533
AsuC2I CCSGG 2 cut(s) 279, 304
AsuHPI GGTGA 5 cut(s) 64, 91, 371, 484, 652
AvaII GGWCC 2 cut(s) 364, 533
BaeGI GKGCMC 3 cut(s) 279, 326, 467
BanI GGYRCC 2 cut(s) 323, 464
BanII GRGCYC 2 cut(s) 279, 641
Bbv12I GWGCWC 1 cut(s) 660
BbvI GCAGC 4 cut(s) 108, 119, 559, 823
BceAI ACGGC 2 cut(s) 85, 160
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 7 cut(s) 32, 209, 571, 620, 634, 829, 887
BcnI CCSGG 2 cut(s) 279, 304
BcoDI GTCTC 2 cut(s) 256, 404
BfaI CTAG 1 cut(s) 728
BfoI RGCGCY 1 cut(s) 238
BglII AGATCT 1 cut(s) 261
BisI GCNGC 7 cut(s) 122, 133, 136, 184, 187, 548, 837
BlsI GCNGC 7 cut(s) 123, 134, 137, 185, 188, 549, 838
Bme1390I CCNGG 9 cut(s) 32, 209, 279, 304, 571, 620, 634, 829, 887
Bme18I GGWCC 2 cut(s) 364, 533
BmgBI CACGTC 3 cut(s) 103, 313, 754
BmgT120I GGNCC 9 cut(s) 34, 205, 275, 276, 281, 295, 364, 481, 533
BmiI GGNNCC 5 cut(s) 92, 277, 325, 466, 638
BmrFI CCNGG 9 cut(s) 32, 209, 279, 304, 571, 620, 634, 829, 887
BpmI CTGGAG 2 cut(s) 110, 655
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 2 cut(s) 279, 304
BsaAI YACGTR 1 cut(s) 361
BsaHI GRCGYC 2 cut(s) 5, 147
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 8 cut(s) 31, 142, 168, 192, 327, 495, 619, 885
BsaWI WCCGGW 1 cut(s) 662
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 342, 474, 501
Bse118I RCCGGY 2 cut(s) 36, 381
Bse1I ACTGG 5 cut(s) 127, 468, 732, 747, 871
BseBI CCWGG 7 cut(s) 32, 209, 571, 620, 634, 829, 887
BseDI CCNNGG 8 cut(s) 31, 142, 168, 192, 327, 495, 619, 885
BseGI GGATG 1 cut(s) 908
BseLI CCNNNNNNNGG 4 cut(s) 193, 342, 474, 501
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 5 cut(s) 127, 468, 732, 747, 871
BseRI GAGGAG 2 cut(s) 209, 422
BseSI GKGCMC 3 cut(s) 279, 326, 467
BseX3I CGGCCG 2 cut(s) 184, 383
BseXI GCAGC 4 cut(s) 108, 119, 559, 823
BseYI CCCAGC 3 cut(s) 223, 447, 483
Bsh1236I CGCG 5 cut(s) 74, 138, 179, 189, 219
Bsh1285I CGRYCG 4 cut(s) 41, 187, 386, 405
BshNI GGYRCC 2 cut(s) 323, 464
BsiEI CGRYCG 4 cut(s) 41, 187, 386, 405
BsiHKAI GWGCWC 1 cut(s) 660
BsiSI CCGG 7 cut(s) 37, 279, 304, 382, 386, 551, 663
BsiWI CGTACG 1 cut(s) 66
BslI CCNNNNNNNGG 4 cut(s) 193, 342, 474, 501
BsmAI GTCTC 2 cut(s) 256, 404
BsmBI CGTCTC 1 cut(s) 256
Bso31I GGTCTC 1 cut(s) 404
Bsp120I GGGCCC 1 cut(s) 275
Bsp1286I GDGCHC 5 cut(s) 279, 326, 467, 641, 660
Bsp143I GATC 4 cut(s) 198, 261, 402, 489
BspACI CCGC 4 cut(s) 136, 183, 187, 273
BspCNI CTCAG 1 cut(s) 580
BspFNI CGCG 5 cut(s) 74, 138, 179, 189, 219
BspLI GGNNCC 5 cut(s) 92, 277, 325, 466, 638
BspT107I GGYRCC 2 cut(s) 323, 464
BspTNI GGTCTC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 183
BsrFI RCCGGY 2 cut(s) 36, 381
BsrI ACTGG 5 cut(s) 127, 468, 732, 747, 871
BssAI RCCGGY 2 cut(s) 36, 381
BssECI CCNNGG 8 cut(s) 31, 142, 168, 192, 327, 495, 619, 885
BssMI GATC 4 cut(s) 198, 261, 402, 489
BssNI GRCGYC 2 cut(s) 5, 147
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 7 cut(s) 32, 209, 571, 620, 634, 829, 887
Bst4CI ACNGT 2 cut(s) 377, 415
BstACI GRCGYC 2 cut(s) 5, 147
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 4 cut(s) 59, 181, 221, 275
BstDEI CTNAG 1 cut(s) 588
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 908
BstFNI CGCG 5 cut(s) 74, 138, 179, 189, 219
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 3 cut(s) 74, 191, 237
BstKTI GATC 4 cut(s) 201, 264, 405, 492
BstMAI GTCTC 2 cut(s) 256, 404
BstMBI GATC 4 cut(s) 198, 261, 402, 489
BstMCI CGRYCG 4 cut(s) 41, 187, 386, 405
BstMWI GCNNNNNNNGC 6 cut(s) 144, 225, 234, 279, 615, 833
BstNI CCWGG 7 cut(s) 32, 209, 571, 620, 634, 829, 887
BstSCI CCNGG 9 cut(s) 30, 207, 277, 302, 569, 618, 632, 827, 885
BstSLI GKGCMC 3 cut(s) 279, 326, 467
BstUI CGCG 5 cut(s) 74, 138, 179, 189, 219
BstV1I GCAGC 4 cut(s) 108, 119, 559, 823
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BstZI CGGCCG 2 cut(s) 184, 383
BtgI CCRYGG 1 cut(s) 142
BtrI CACGTC 3 cut(s) 103, 313, 754
BtsCI GGATG 1 cut(s) 908
BtsIMutI CAGTG 3 cut(s) 134, 475, 740
Cac8I GCNNGC 4 cut(s) 59, 181, 221, 275
CciNI GCGGCCGC 1 cut(s) 184
CfoI GCGC 3 cut(s) 74, 191, 237
Cfr10I RCCGGY 2 cut(s) 36, 381
Cfr13I GGNCC 9 cut(s) 34, 205, 275, 276, 281, 295, 364, 481, 533
CseI GACGC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 67, 358
CviAII CATG 3 cut(s) 16, 202, 352
CviQI GTAC 2 cut(s) 67, 358
DdeI CTNAG 1 cut(s) 588
DpnI GATC 4 cut(s) 200, 263, 404, 491
DpnII GATC 4 cut(s) 198, 261, 402, 489
DrdI GACNNNNNNGTC 2 cut(s) 146, 248
DseDI GACNNNNNNGTC 2 cut(s) 146, 248
EaeI YGGCCR 2 cut(s) 184, 383
EagI CGGCCG 2 cut(s) 184, 383
EclXI CGGCCG 2 cut(s) 184, 383
Eco130I CCWWGG 1 cut(s) 327
Eco147I AGGCCT 1 cut(s) 332
Eco24I GRGCYC 2 cut(s) 279, 641
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 2 cut(s) 364, 533
Eco47III AGCGCT 1 cut(s) 236
Eco52I CGGCCG 2 cut(s) 184, 383
Eco57I CTGAAG 3 cut(s) 68, 779, 797
EcoO109I RGGNCCY 1 cut(s) 295
EcoRII CCWGG 7 cut(s) 30, 207, 569, 618, 632, 827, 885
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 2 cut(s) 279, 641
ErhI CCWWGG 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 3 cut(s) 19, 205, 355
FatI CATG 3 cut(s) 15, 201, 351
FauI CCCGC 1 cut(s) 266
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 7 cut(s) 122, 133, 136, 184, 187, 548, 837
FokI GGATG 1 cut(s) 895
FriOI GRGCYC 2 cut(s) 279, 641
Fsp4HI GCNGC 7 cut(s) 122, 133, 136, 184, 187, 548, 837
FspBI CTAG 1 cut(s) 728
GlaI GCGC 3 cut(s) 73, 190, 236
GluI GCNGC 7 cut(s) 122, 133, 136, 184, 187, 548, 837
GsaI CCCAGC 3 cut(s) 227, 451, 487
GsuI CTGGAG 2 cut(s) 110, 655
HaeII RGCGCY 1 cut(s) 238
HapII CCGG 7 cut(s) 37, 279, 304, 382, 386, 551, 663
HgaI GACGC 1 cut(s) 136
HhaI GCGC 3 cut(s) 74, 191, 237
Hin1I GRCGYC 2 cut(s) 5, 147
Hin1II CATG 3 cut(s) 19, 205, 355
Hin6I GCGC 3 cut(s) 72, 189, 235
HinP1I GCGC 3 cut(s) 72, 189, 235
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 3 cut(s) 389, 584, 881
HpaII CCGG 7 cut(s) 37, 279, 304, 382, 386, 551, 663
HphI GGTGA 5 cut(s) 64, 91, 371, 484, 652
Hpy166II GTNNAC 3 cut(s) 151, 175, 364
Hpy188I TCNGA 4 cut(s) 241, 537, 589, 777
Hpy188III TCNNGA 2 cut(s) 88, 340
Hpy8I GTNNAC 3 cut(s) 151, 175, 364
Hpy99I CGWCG 3 cut(s) 251, 317, 320
HpyAV CCTTC 3 cut(s) 43, 100, 757
HpyCH4III ACNGT 2 cut(s) 377, 415
HpyCH4IV ACGT 5 cut(s) 5, 102, 312, 360, 753
HpyCH4V TGCA 4 cut(s) 707, 788, 821, 906
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 225, 234, 279, 615, 833
HpyF3I CTNAG 1 cut(s) 588
HpySE526I ACGT 5 cut(s) 5, 102, 312, 360, 753
Hsp92I GRCGYC 2 cut(s) 5, 147
Hsp92II CATG 3 cut(s) 19, 205, 355
HspAI GCGC 3 cut(s) 72, 189, 235
Kzo9I GATC 4 cut(s) 198, 261, 402, 489
LmnI GCTCC 4 cut(s) 129, 242, 544, 636
Lsp1109I GCAGC 4 cut(s) 108, 119, 559, 823
MaeI CTAG 1 cut(s) 728
MaeII ACGT 5 cut(s) 5, 102, 312, 360, 753
MaeIII GTNAC 2 cut(s) 377, 738
MalI GATC 4 cut(s) 200, 263, 404, 491
MbiI CCGCTC 1 cut(s) 183
MboI GATC 4 cut(s) 198, 261, 402, 489
MboII GAAGA 3 cut(s) 148, 256, 772
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 5 cut(s) 279, 326, 467, 641, 660
MluCI AATT 4 cut(s) 427, 507, 783, 900
MlyI GAGTC 2 cut(s) 383, 593
MmeI TCCRAC 2 cut(s) 264, 501
MseI TTAA 1 cut(s) 768
MslI CAYNNNNRTG 1 cut(s) 913
MspA1I CMGCKG 2 cut(s) 61, 97
MspI CCGG 7 cut(s) 37, 279, 304, 382, 386, 551, 663
MspR9I CCNGG 9 cut(s) 32, 209, 279, 304, 571, 620, 634, 829, 887
MunI CAATTG 1 cut(s) 783
MvaI CCWGG 7 cut(s) 32, 209, 571, 620, 634, 829, 887
MvnI CGCG 5 cut(s) 74, 138, 179, 189, 219
MwoI GCNNNNNNNGC 6 cut(s) 144, 225, 234, 279, 615, 833
NciI CCSGG 2 cut(s) 279, 304
NdeII GATC 4 cut(s) 198, 261, 402, 489
NlaIII CATG 3 cut(s) 19, 205, 355
NlaIV GGNNCC 5 cut(s) 92, 277, 325, 466, 638
NmeAIII GCCGAG 2 cut(s) 193, 217
NmuCI GTSAC 2 cut(s) 377, 738
NotI GCGGCCGC 1 cut(s) 184
PceI AGGCCT 1 cut(s) 332
PcsI WCGNNNNNNNCGW 3 cut(s) 71, 165, 411
PfeI GAWTC 1 cut(s) 881
Pfl23II CGTACG 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 474
PfoI TCCNGGA 1 cut(s) 302
PkrI GCNGC 7 cut(s) 123, 134, 137, 185, 188, 549, 838
Ple19I CGATCG 1 cut(s) 405
PleI GAGTC 2 cut(s) 383, 592
PpsI GAGTC 2 cut(s) 383, 592
Ppu21I YACGTR 1 cut(s) 361
Psp6I CCWGG 7 cut(s) 30, 207, 569, 618, 632, 827, 885
PspFI CCCAGC 3 cut(s) 223, 447, 483
PspGI CCWGG 7 cut(s) 30, 207, 569, 618, 632, 827, 885
PspLI CGTACG 1 cut(s) 66
PspN4I GGNNCC 5 cut(s) 92, 277, 325, 466, 638
PspOMI GGGCCC 1 cut(s) 275
PspPI GGNCC 9 cut(s) 34, 205, 275, 276, 281, 295, 364, 481, 533
PsuI RGATCY 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 245
PvuI CGATCG 1 cut(s) 405
PvuII CAGCTG 2 cut(s) 61, 97
RsaI GTAC 2 cut(s) 68, 359
RsaNI GTAC 2 cut(s) 67, 358
RseI CAYNNNNRTG 1 cut(s) 913
SaqAI TTAA 1 cut(s) 768
SatI GCNGC 7 cut(s) 122, 133, 136, 184, 187, 548, 837
Sau3AI GATC 4 cut(s) 198, 261, 402, 489
Sau96I GGNCC 9 cut(s) 34, 205, 275, 276, 281, 295, 364, 481, 533
SchI GAGTC 2 cut(s) 383, 593
ScrFI CCNGG 9 cut(s) 32, 209, 279, 304, 571, 620, 634, 829, 887
SduI GDGCHC 5 cut(s) 279, 326, 467, 641, 660
SinI GGWCC 2 cut(s) 364, 533
SmiMI CAYNNNNRTG 1 cut(s) 913
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 4 cut(s) 427, 507, 783, 900
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 4 cut(s) 136, 183, 187, 273
SspMI CTAG 1 cut(s) 728
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 9 cut(s) 30, 207, 277, 302, 569, 618, 632, 827, 885
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 377, 415
TaiI ACGT 5 cut(s) 8, 105, 315, 363, 756
TaqI TCGA 4 cut(s) 159, 318, 348, 405
TasI AATT 4 cut(s) 427, 507, 783, 900
TauI GCSGC 3 cut(s) 138, 186, 189
TfiI GAWTC 1 cut(s) 881
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TscAI CASTG 3 cut(s) 134, 475, 747
TseFI GTSAC 2 cut(s) 377, 738
TseI GCWGC 4 cut(s) 121, 132, 547, 836
Tsp45I GTSAC 2 cut(s) 377, 738
TspDTI ATGAA 1 cut(s) 440
TspRI CASTG 3 cut(s) 134, 475, 747
Tth111I GACNNNGTC 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 474
VpaK11BI GGWCC 2 cut(s) 364, 533
XapI RAATTY 1 cut(s) 900
XcmI CCANNNNNNNNNTGG 2 cut(s) 220, 739
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 728
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.