Rmu_sc0002963.1_g000017

voltage-gated potassium channel subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002963.1
OG0016125
Physical Location & Seq
Reverse (-)
110087 .. 113460
3374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002963.1_g000017.1.cds

Sequence Viewer

Length: 987 bp
atgatttacaacaacctggggcggtcggggctgaaggtgagccagctgtcgtacggcgcgtgggtgagcttcgggaaccagctggacgtgaaggaggcgaagtcgctgctccagtgctgccgcgagcacggcgtcaacttcttcgacaacgccgaggtctacgcgagcggccgcgccgaggagatcatgggccaggccatacgcgagctgggctggaagcgctccgacatcgtcgtctccaccaagatcttctggggcgggcccggcccaaacgacaagggcctctcccggaagcacgtcgtcgagggcaccaaggcctccctcaagaggctcgatatggagtacgtcgacctcatctactgtcaccgcccggactccaccacgccgatcgaggagaccgtcagggctatgaactacgtgattgataagggctgggctttttattggggcaccagtgagtggtcggcccagcagatcaccgaggcttggggaattgctgacaagttggatttggttggtccgattgtggagcagccggagtataacttgttgtccaggcacaaggttgagtctgagttcctcccattatacagcaactatggcctgggtcttaccacctggagcccacttgcttctggtgtgctcaccggaaaatataacaagggaaatataccacctgatagccgatttgcattggagaactacaaaaatctagccagtaggtcactggttgatgacgtgctgaagaaggttaatggtctgaagccaattgcagatgagttaggcgtgccactatctcaacttgcaattgcctggtgtgctgctaatcctaatgtgtcatcagttattactggtgctacaaaggaatcccagatccaggagaacatgaaagcaattgatgtgatccctcttttaactcctactgtgatggagaagattgagaatgttgttcaaagtaggccgaagcgtccagaatcatataggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

328

Amino Acids

36.56

Weight (kDa)

6.47

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04690
fragaria_vesca FvH4_4g05880
malus_domestica MD13G1231200.v1.1 MD16G1235900.v1.1
prunus_persica Prupe.1G061100_v2.0.a1
pyrus_communis pycom13g20400 pycom16g19730
rosa_chinensis RchiOBHm_Chr4g0396981
rosa_laevigata RLG00000009462
rosa_multiflora Rmu_sc0002963.1_g000017 Rmu_sc0022770.1_g000004
rosa_roxburghii Rroxscaffold_5G00341970
rosa_rugosa Rorug03G0346000
rosa_samantha Rh4BG072200
rosa_wichuraiana Rw4G006080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AccB1I GGYRCC 2 cut(s) 308, 449
AccB7I CCANNNNNTGG 1 cut(s) 459
AccBSI CCGCTC 1 cut(s) 168
AccI GTMKAC 2 cut(s) 159, 348
AccII CGCG 5 cut(s) 59, 123, 164, 174, 204
AciI CCGC 6 cut(s) 22, 121, 168, 172, 258, 367
AclWI GGATC 2 cut(s) 868, 898
AcoI YGGCCR 1 cut(s) 169
AcuI CTGAAG 3 cut(s) 53, 764, 782
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 53, 344
AfeI AGCGCT 1 cut(s) 221
AfiI CCNNNNNNNGG 5 cut(s) 178, 327, 459, 486, 877
AgsI TTSAA 1 cut(s) 953
AjiI CACGTC 3 cut(s) 88, 298, 739
AjnI CCWGG 7 cut(s) 15, 192, 554, 603, 617, 812, 876
AluBI AGCT 4 cut(s) 46, 69, 82, 208
AluI AGCT 4 cut(s) 46, 69, 82, 208
Alw21I GWGCWC 2 cut(s) 129, 645
Alw26I GTCTC 2 cut(s) 241, 389
AlwI GGATC 2 cut(s) 868, 898
Aor51HI AGCGCT 1 cut(s) 221
ApaI GGGCCC 1 cut(s) 264
ApeKI GCWGC 4 cut(s) 106, 117, 532, 821
AspLEI GCGC 3 cut(s) 59, 176, 222
AspS9I GGNCC 7 cut(s) 190, 260, 261, 266, 280, 466, 518
AsuC2I CCSGG 3 cut(s) 264, 289, 371
AsuHPI GGTGA 5 cut(s) 49, 76, 356, 469, 637
AvaII GGWCC 1 cut(s) 518
BaeGI GKGCMC 3 cut(s) 264, 311, 452
BanI GGYRCC 2 cut(s) 308, 449
BanII GRGCYC 2 cut(s) 264, 626
Bbv12I GWGCWC 2 cut(s) 129, 645
BbvI GCAGC 4 cut(s) 93, 104, 544, 808
BccI CCATC 1 cut(s) 922
BceAI ACGGC 2 cut(s) 70, 145
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 7 cut(s) 17, 194, 556, 605, 619, 814, 878
BcnI CCSGG 3 cut(s) 264, 289, 371
BcoDI GTCTC 2 cut(s) 241, 389
BfaI CTAG 1 cut(s) 713
BfoI RGCGCY 1 cut(s) 223
BglII AGATCT 1 cut(s) 246
BisI GCNGC 7 cut(s) 107, 118, 121, 169, 172, 533, 822
BlsI GCNGC 7 cut(s) 108, 119, 122, 170, 173, 534, 823
Bme18I GGWCC 1 cut(s) 518
BmgBI CACGTC 3 cut(s) 88, 298, 739
BmgT120I GGNCC 7 cut(s) 190, 260, 261, 266, 280, 466, 518
BmiI GGNNCC 5 cut(s) 77, 262, 310, 451, 623
BpmI CTGGAG 2 cut(s) 95, 640
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 3 cut(s) 264, 289, 371
BsaAI YACGTR 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 6 cut(s) 16, 153, 177, 312, 480, 604
BsaWI WCCGGW 1 cut(s) 647
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 5 cut(s) 178, 327, 459, 486, 877
Bse1I ACTGG 5 cut(s) 112, 453, 717, 732, 856
BseBI CCWGG 7 cut(s) 17, 194, 556, 605, 619, 814, 878
BseDI CCNNGG 6 cut(s) 16, 153, 177, 312, 480, 604
BseLI CCNNNNNNNGG 5 cut(s) 178, 327, 459, 486, 877
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 5 cut(s) 112, 453, 717, 732, 856
BseRI GAGGAG 2 cut(s) 194, 407
BseSI GKGCMC 3 cut(s) 264, 311, 452
BseX3I CGGCCG 1 cut(s) 169
BseXI GCAGC 4 cut(s) 93, 104, 544, 808
BseYI CCCAGC 3 cut(s) 208, 432, 468
Bsh1236I CGCG 5 cut(s) 59, 123, 164, 174, 204
Bsh1285I CGRYCG 3 cut(s) 26, 172, 390
BshNI GGYRCC 2 cut(s) 308, 449
BsiEI CGRYCG 3 cut(s) 26, 172, 390
BsiHKAI GWGCWC 2 cut(s) 129, 645
BsiSI CCGG 5 cut(s) 264, 289, 371, 536, 648
BsiWI CGTACG 1 cut(s) 51
BslI CCNNNNNNNGG 5 cut(s) 178, 327, 459, 486, 877
BsmAI GTCTC 2 cut(s) 241, 389
BsmBI CGTCTC 1 cut(s) 241
Bso31I GGTCTC 1 cut(s) 389
Bsp120I GGGCCC 1 cut(s) 260
Bsp1286I GDGCHC 6 cut(s) 129, 264, 311, 452, 626, 645
Bsp143I GATC 6 cut(s) 183, 246, 387, 474, 873, 903
BspACI CCGC 6 cut(s) 22, 121, 168, 172, 258, 367
BspCNI CTCAG 1 cut(s) 565
BspFNI CGCG 5 cut(s) 59, 123, 164, 174, 204
BspLI GGNNCC 5 cut(s) 77, 262, 310, 451, 623
BspPI GGATC 2 cut(s) 868, 898
BspT107I GGYRCC 2 cut(s) 308, 449
BspTNI GGTCTC 1 cut(s) 389
BsrBI CCGCTC 1 cut(s) 168
BsrI ACTGG 5 cut(s) 112, 453, 717, 732, 856
BssECI CCNNGG 6 cut(s) 16, 153, 177, 312, 480, 604
BssMI GATC 6 cut(s) 183, 246, 387, 474, 873, 903
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 7 cut(s) 17, 194, 556, 605, 619, 814, 878
Bst4CI ACNGT 3 cut(s) 362, 400, 925
BstACI GRCGYC 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 6 cut(s) 44, 125, 166, 206, 260, 788
BstDEI CTNAG 1 cut(s) 573
BstFNI CGCG 5 cut(s) 59, 123, 164, 174, 204
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 3 cut(s) 59, 176, 222
BstKTI GATC 6 cut(s) 186, 249, 390, 477, 876, 906
BstMAI GTCTC 2 cut(s) 241, 389
BstMBI GATC 6 cut(s) 183, 246, 387, 474, 873, 903
BstMCI CGRYCG 3 cut(s) 26, 172, 390
BstMWI GCNNNNNNNGC 7 cut(s) 28, 129, 210, 219, 264, 600, 818
BstNI CCWGG 7 cut(s) 17, 194, 556, 605, 619, 814, 878
BstSLI GKGCMC 3 cut(s) 264, 311, 452
BstUI CGCG 5 cut(s) 59, 123, 164, 174, 204
BstV1I GCAGC 4 cut(s) 93, 104, 544, 808
BstX2I RGATCY 2 cut(s) 246, 873
BstYI RGATCY 2 cut(s) 246, 873
BstZI CGGCCG 1 cut(s) 169
BtrI CACGTC 3 cut(s) 88, 298, 739
BtsIMutI CAGTG 3 cut(s) 119, 460, 725
Cac8I GCNNGC 6 cut(s) 44, 125, 166, 206, 260, 788
CciNI GCGGCCGC 1 cut(s) 169
CfoI GCGC 3 cut(s) 59, 176, 222
Cfr13I GGNCC 7 cut(s) 190, 260, 261, 266, 280, 466, 518
CseI GACGC 2 cut(s) 121, 956
Csp6I GTAC 2 cut(s) 52, 343
CviAII CATG 2 cut(s) 187, 886
CviQI GTAC 2 cut(s) 52, 343
DdeI CTNAG 1 cut(s) 573
DpnI GATC 6 cut(s) 185, 248, 389, 476, 875, 905
DpnII GATC 6 cut(s) 183, 246, 387, 474, 873, 903
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 169
EagI CGGCCG 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 312
Eco147I AGGCCT 1 cut(s) 317
Eco24I GRGCYC 2 cut(s) 264, 626
Eco31I GGTCTC 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 518
Eco47III AGCGCT 1 cut(s) 221
Eco52I CGGCCG 1 cut(s) 169
Eco57I CTGAAG 3 cut(s) 53, 764, 782
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 7 cut(s) 15, 192, 554, 603, 617, 812, 876
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 2 cut(s) 264, 626
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 2 cut(s) 190, 889
FatI CATG 2 cut(s) 186, 885
FauI CCCGC 1 cut(s) 251
FblI GTMKAC 2 cut(s) 159, 348
Fnu4HI GCNGC 7 cut(s) 107, 118, 121, 169, 172, 533, 822
FriOI GRGCYC 2 cut(s) 264, 626
Fsp4HI GCNGC 7 cut(s) 107, 118, 121, 169, 172, 533, 822
FspBI CTAG 1 cut(s) 713
GlaI GCGC 3 cut(s) 58, 175, 221
GluI GCNGC 7 cut(s) 107, 118, 121, 169, 172, 533, 822
GsaI CCCAGC 3 cut(s) 212, 436, 472
GsuI CTGGAG 2 cut(s) 95, 640
HaeII RGCGCY 1 cut(s) 223
HapII CCGG 5 cut(s) 264, 289, 371, 536, 648
HgaI GACGC 2 cut(s) 121, 956
HhaI GCGC 3 cut(s) 59, 176, 222
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 2 cut(s) 190, 889
Hin6I GCGC 3 cut(s) 57, 174, 220
HinP1I GCGC 3 cut(s) 57, 174, 220
HincII GTYRAC 2 cut(s) 136, 349
HindII GTYRAC 2 cut(s) 136, 349
HinfI GANTC 4 cut(s) 374, 569, 866, 974
HpaII CCGG 5 cut(s) 264, 289, 371, 536, 648
HphI GGTGA 5 cut(s) 49, 76, 356, 469, 637
Hpy166II GTNNAC 3 cut(s) 136, 160, 349
Hpy188I TCNGA 4 cut(s) 226, 522, 574, 762
Hpy188III TCNNGA 3 cut(s) 73, 325, 971
Hpy8I GTNNAC 3 cut(s) 136, 160, 349
Hpy99I CGWCG 4 cut(s) 236, 302, 305, 350
HpyAV CCTTC 3 cut(s) 28, 85, 742
HpyCH4III ACNGT 3 cut(s) 362, 400, 925
HpyCH4IV ACGT 5 cut(s) 87, 297, 345, 417, 738
HpyCH4V TGCA 3 cut(s) 692, 773, 806
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 129, 210, 219, 264, 600, 818
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 5 cut(s) 87, 297, 345, 417, 738
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 2 cut(s) 190, 889
HspAI GCGC 3 cut(s) 57, 174, 220
Kzo9I GATC 6 cut(s) 183, 246, 387, 474, 873, 903
LmnI GCTCC 4 cut(s) 114, 227, 529, 621
Lsp1109I GCAGC 4 cut(s) 93, 104, 544, 808
MaeI CTAG 1 cut(s) 713
MaeII ACGT 5 cut(s) 87, 297, 345, 417, 738
MaeIII GTNAC 2 cut(s) 362, 723
MalI GATC 6 cut(s) 185, 248, 389, 476, 875, 905
MbiI CCGCTC 1 cut(s) 168
MboI GATC 6 cut(s) 183, 246, 387, 474, 873, 903
MboII GAAGA 4 cut(s) 133, 241, 757, 946
MfeI CAATTG 3 cut(s) 768, 807, 894
MflI RGATCY 2 cut(s) 246, 873
MhlI GDGCHC 6 cut(s) 129, 264, 311, 452, 626, 645
MluCI AATT 4 cut(s) 492, 768, 807, 894
MlyI GAGTC 2 cut(s) 368, 578
MmeI TCCRAC 2 cut(s) 249, 486
MseI TTAA 2 cut(s) 753, 914
MslI CAYNNNNRTG 1 cut(s) 982
MspA1I CMGCKG 2 cut(s) 46, 82
MspI CCGG 5 cut(s) 264, 289, 371, 536, 648
MunI CAATTG 3 cut(s) 768, 807, 894
MvaI CCWGG 7 cut(s) 17, 194, 556, 605, 619, 814, 878
MvnI CGCG 5 cut(s) 59, 123, 164, 174, 204
MwoI GCNNNNNNNGC 7 cut(s) 28, 129, 210, 219, 264, 600, 818
NciI CCSGG 3 cut(s) 264, 289, 371
NdeII GATC 6 cut(s) 183, 246, 387, 474, 873, 903
NlaIII CATG 2 cut(s) 190, 889
NlaIV GGNNCC 5 cut(s) 77, 262, 310, 451, 623
NmeAIII GCCGAG 2 cut(s) 178, 202
NmuCI GTSAC 2 cut(s) 362, 723
NotI GCGGCCGC 1 cut(s) 169
PceI AGGCCT 1 cut(s) 317
PcsI WCGNNNNNNNCGW 3 cut(s) 56, 150, 396
PfeI GAWTC 2 cut(s) 866, 974
Pfl23II CGTACG 1 cut(s) 51
PflFI GACNNNGTC 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 459
PfoI TCCNGGA 2 cut(s) 287, 876
PkrI GCNGC 7 cut(s) 108, 119, 122, 170, 173, 534, 823
Ple19I CGATCG 1 cut(s) 390
PleI GAGTC 2 cut(s) 368, 577
PpsI GAGTC 2 cut(s) 368, 577
Ppu21I YACGTR 1 cut(s) 418
Psp6I CCWGG 7 cut(s) 15, 192, 554, 603, 617, 812, 876
PspFI CCCAGC 3 cut(s) 208, 432, 468
PspGI CCWGG 7 cut(s) 15, 192, 554, 603, 617, 812, 876
PspLI CGTACG 1 cut(s) 51
PspN4I GGNNCC 5 cut(s) 77, 262, 310, 451, 623
PspOMI GGGCCC 1 cut(s) 260
PspPI GGNCC 7 cut(s) 190, 260, 261, 266, 280, 466, 518
PsuI RGATCY 2 cut(s) 246, 873
PsyI GACNNNGTC 1 cut(s) 230
PvuI CGATCG 1 cut(s) 390
PvuII CAGCTG 2 cut(s) 46, 82
RsaI GTAC 2 cut(s) 53, 344
RsaNI GTAC 2 cut(s) 52, 343
RseI CAYNNNNRTG 1 cut(s) 982
SalI GTCGAC 1 cut(s) 347
SaqAI TTAA 2 cut(s) 753, 914
SatI GCNGC 7 cut(s) 107, 118, 121, 169, 172, 533, 822
Sau3AI GATC 6 cut(s) 183, 246, 387, 474, 873, 903
Sau96I GGNCC 7 cut(s) 190, 260, 261, 266, 280, 466, 518
SchI GAGTC 2 cut(s) 368, 578
SduI GDGCHC 6 cut(s) 129, 264, 311, 452, 626, 645
SinI GGWCC 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 982
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 4 cut(s) 492, 768, 807, 894
SseBI AGGCCT 1 cut(s) 317
SsiI CCGC 6 cut(s) 22, 121, 168, 172, 258, 367
SspMI CTAG 1 cut(s) 713
StuI AGGCCT 1 cut(s) 317
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 3 cut(s) 362, 400, 925
TaiI ACGT 5 cut(s) 90, 300, 348, 420, 741
TaqI TCGA 5 cut(s) 144, 303, 333, 348, 390
TasI AATT 4 cut(s) 492, 768, 807, 894
TauI GCSGC 3 cut(s) 123, 171, 174
TfiI GAWTC 2 cut(s) 866, 974
Tru1I TTAA 2 cut(s) 753, 914
Tru9I TTAA 2 cut(s) 753, 914
TscAI CASTG 3 cut(s) 119, 460, 732
TseFI GTSAC 2 cut(s) 362, 723
TseI GCWGC 4 cut(s) 106, 117, 532, 821
Tsp45I GTSAC 2 cut(s) 362, 723
TspDTI ATGAA 2 cut(s) 425, 902
TspRI CASTG 3 cut(s) 119, 460, 732
Tth111I GACNNNGTC 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 2 cut(s) 205, 724
XmiI GTMKAC 2 cut(s) 159, 348
XspI CTAG 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.