Prupe.1G061100_v2.0.a1

voltage-gated potassium channel subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016125
Physical Location & Seq
Forward (+)
4313212 .. 4317336
4125 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G061100.1

Sequence Viewer

Length: 1002 bp
ATGTCGTCGAACACTATGCAGTACAAGAATCTGGGCCGCTCGGGGCTCAAGGTGAGCCAGCTCTCGTACGGAGCATGGGTCAGCTTCGGCAACCAGCTCGACGTCAAGGAGGCCAAGTCTCTCCTCCAGACCTGCCGAGACCACGGCGTCAACTTCTTCGATAACGCCGAGGTCTACGCCTCCGGCCGCGCCGAGGAGATCATGGGCCAGGCCATCCGCGAGCTCGGATGGAAGCGCTCCGACGTCGTCGTTTCCACCAAGATCTTCTGGGGTGGGCCCGGCCCCAACGACAAGGGCCTCTCCAGAAAGCACGTCGTCGAAGGCACCAAGGCGTCGTTGAAGAGGCTGGATATGGATTATGTTGATCTTATCTATTGCCACAGGCCGGATGTCACTACGCCGATTGAGGAGACGGTGAGGGCTATGAACTATGTGATTGATAAGGGTTGGGCTTTTTATTGGGGGACCAGTGAGTGGTCGGCTCAGCAGATCACTGAGGCTTGGGGGATCGCCGAGAGGTTGGATTTGGTGGGGCCCGTTGTTGAGCAGCCTGAGTATAATTTGTTGTCCAGGCACAAGGTTGAGTCTGAGTACCTCCCACTGTACACCAACTACGGTCTGGGTCTTACCACTTGGAGCCCGCTTGCTTCTGGTGTGCTCACTGGAAAATATAACAAGGGAAATATACCACCTGATAGCCGATTTGCATTGGACAATTACAAAAATCTTGCTAGTCGATCACTGGTTGATGATGTGCTGAAAAAGGTTAATGGTCTGAAGCCAATTGCAGATGAATTAGGTGTACCATTAGCTCAACTTGCAATTGCATGGTGTGCTGCTAATCCTAACGTCACATCAGTTATTACTGGTGCTACAAAGGAGTCCCAGATTCAAGAGAACATGAAAGCTGTAGATGTAATCCCGCTATTAACTCCCGCTGTGATGGAGAAGATTGAGGCTGTTGTTCAAAGCAAGCCAAAGCGTCCAGAGTCATATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

334

Amino Acids

37.0

Weight (kDa)

6.92

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04690
fragaria_vesca FvH4_4g05880
malus_domestica MD13G1231200.v1.1 MD16G1235900.v1.1
prunus_persica Prupe.1G061100_v2.0.a1
pyrus_communis pycom13g20400 pycom16g19730
rosa_chinensis RchiOBHm_Chr4g0396981
rosa_laevigata RLG00000009462
rosa_multiflora Rmu_sc0002963.1_g000017 Rmu_sc0022770.1_g000004
rosa_roxburghii Rroxscaffold_5G00341970
rosa_rugosa Rorug03G0346000
rosa_samantha Rh4BG072200
rosa_wichuraiana Rw4G006080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AatII GACGTC 2 cut(s) 105, 246
Acc36I ACCTGC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 474
AccBSI CCGCTC 1 cut(s) 39
AccI GTMKAC 1 cut(s) 174
AccII CGCG 2 cut(s) 189, 219
AciI CCGC 6 cut(s) 37, 187, 217, 641, 923, 936
AclWI GGATC 1 cut(s) 515
AcoI YGGCCR 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 797
AcyI GRCGYC 4 cut(s) 102, 147, 243, 332
AfaI GTAC 5 cut(s) 23, 68, 593, 605, 804
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 3 cut(s) 193, 385, 474
AgsI TTSAA 3 cut(s) 340, 893, 968
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 2 cut(s) 207, 569
AluBI AGCT 6 cut(s) 61, 84, 97, 223, 812, 908
AluI AGCT 6 cut(s) 61, 84, 97, 223, 812, 908
Alw21I GWGCWC 2 cut(s) 225, 660
Alw26I GTCTC 3 cut(s) 123, 132, 404
AlwI GGATC 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 40
Aor51HI AGCGCT 1 cut(s) 236
ApaI GGGCCC 2 cut(s) 279, 537
ApeKI GCWGC 2 cut(s) 547, 836
AspLEI GCGC 2 cut(s) 191, 237
AspS9I GGNCC 9 cut(s) 34, 205, 275, 276, 281, 295, 465, 533, 534
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 64, 427
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 1 cut(s) 465
BaeGI GKGCMC 2 cut(s) 279, 537
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 5 cut(s) 48, 225, 279, 537, 641
Bbv12I GWGCWC 2 cut(s) 225, 660
BbvI GCAGC 2 cut(s) 559, 823
BccI CCATC 3 cut(s) 221, 222, 937
BceAI ACGGC 1 cut(s) 160
BcgI CGANNNNNNTGC 3 cut(s) 32, 79, 113
BciT130I CCWGG 2 cut(s) 209, 571
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 3 cut(s) 123, 132, 404
BfaI CTAG 1 cut(s) 732
BfmI CTRYAG 1 cut(s) 909
BfoI RGCGCY 1 cut(s) 238
BfuAI ACCTGC 1 cut(s) 140
BglII AGATCT 1 cut(s) 261
BisI GCNGC 4 cut(s) 37, 187, 548, 837
BlpI GCTNAGC 1 cut(s) 483
BlsI GCNGC 4 cut(s) 38, 188, 549, 838
Bme1390I CCNGG 3 cut(s) 209, 279, 571
Bme18I GGWCC 1 cut(s) 465
BmeT110I CYCGRG 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 9 cut(s) 34, 205, 275, 276, 281, 295, 465, 533, 534
BmiI GGNNCC 7 cut(s) 277, 283, 325, 466, 534, 535, 638
BmrFI CCNGG 3 cut(s) 209, 279, 571
BpmI CTGGAG 2 cut(s) 110, 286
Bpu1102I GCTNAGC 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 279
BsaHI GRCGYC 4 cut(s) 102, 147, 243, 332
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 4 cut(s) 142, 168, 192, 327
BsaXI ACNNNNNCTCC 4 cut(s) 63, 93, 101, 131
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 385, 474
Bse1I ACTGG 4 cut(s) 468, 667, 747, 871
BseBI CCWGG 2 cut(s) 209, 571
BseDI CCNNGG 4 cut(s) 142, 168, 192, 327
BseGI GGATG 3 cut(s) 213, 233, 394
BseLI CCNNNNNNNGG 3 cut(s) 193, 385, 474
BseMII CTCAG 4 cut(s) 486, 497, 543, 579
BseNI ACTGG 4 cut(s) 468, 667, 747, 871
BseRI GAGGAG 3 cut(s) 113, 209, 422
BseSI GKGCMC 2 cut(s) 279, 537
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 2 cut(s) 559, 823
Bsh1236I CGCG 2 cut(s) 189, 219
Bsh1285I CGRYCG 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 323
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 2 cut(s) 225, 660
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 3 cut(s) 183, 279, 386
BsiWI CGTACG 1 cut(s) 66
BslFI GGGAC 2 cut(s) 478, 868
BslI CCNNNNNNNGG 3 cut(s) 193, 385, 474
BsmAI GTCTC 3 cut(s) 123, 132, 404
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 2 cut(s) 478, 868
Bso31I GGTCTC 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 40
Bsp120I GGGCCC 2 cut(s) 275, 533
Bsp1286I GDGCHC 6 cut(s) 48, 225, 279, 537, 641, 660
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 6 cut(s) 198, 261, 364, 489, 507, 737
Bsp1720I GCTNAGC 1 cut(s) 483
BspACI CCGC 6 cut(s) 37, 187, 217, 641, 923, 936
BspCNI CTCAG 4 cut(s) 487, 496, 544, 580
BspFNI CGCG 2 cut(s) 189, 219
BspLI GGNNCC 7 cut(s) 277, 283, 325, 466, 534, 535, 638
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 132
BsrBI CCGCTC 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 4 cut(s) 468, 667, 747, 871
BssECI CCNNGG 4 cut(s) 142, 168, 192, 327
BssMI GATC 6 cut(s) 198, 261, 364, 489, 507, 737
BssNI GRCGYC 4 cut(s) 102, 147, 243, 332
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 2 cut(s) 209, 571
Bst4CI ACNGT 3 cut(s) 415, 603, 617
Bst6I CTCTTC 1 cut(s) 335
BstACI GRCGYC 4 cut(s) 102, 147, 243, 332
BstAPI GCANNNNNTGC 1 cut(s) 833
BstAUI TGTACA 1 cut(s) 603
BstC8I GCNNGC 5 cut(s) 59, 221, 641, 645, 974
BstDEI CTNAG 4 cut(s) 483, 495, 552, 588
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 3 cut(s) 213, 233, 394
BstFNI CGCG 2 cut(s) 189, 219
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 191, 237
BstKTI GATC 6 cut(s) 201, 264, 367, 492, 510, 740
BstMAI GTCTC 3 cut(s) 123, 132, 404
BstMBI GATC 6 cut(s) 198, 261, 364, 489, 507, 737
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 818, 833
BstNI CCWGG 2 cut(s) 209, 571
BstSCI CCNGG 3 cut(s) 207, 277, 569
BstSFI CTRYAG 1 cut(s) 909
BstSLI GKGCMC 2 cut(s) 279, 537
BstUI CGCG 2 cut(s) 189, 219
BstV1I GCAGC 2 cut(s) 559, 823
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BstZI CGGCCG 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 142
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 3 cut(s) 213, 233, 394
BtsIMutI CAGTG 5 cut(s) 475, 492, 599, 660, 740
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 5 cut(s) 59, 221, 641, 645, 974
CfoI GCGC 2 cut(s) 191, 237
Cfr13I GGNCC 9 cut(s) 34, 205, 275, 276, 281, 295, 465, 533, 534
CseI GACGC 3 cut(s) 136, 321, 971
Csp6I GTAC 5 cut(s) 22, 67, 592, 604, 803
CviAII CATG 4 cut(s) 75, 202, 828, 901
CviQI GTAC 5 cut(s) 22, 67, 592, 604, 803
DdeI CTNAG 4 cut(s) 483, 495, 552, 588
DpnI GATC 6 cut(s) 200, 263, 366, 491, 509, 739
DpnII GATC 6 cut(s) 198, 261, 364, 489, 507, 737
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 184
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 223
EclXI CGGCCG 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 5 cut(s) 48, 225, 279, 537, 641
Eco31I GGTCTC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 465
Eco47III AGCGCT 1 cut(s) 236
Eco52I CGGCCG 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 797
Eco88I CYCGRG 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 223
EcoO109I RGGNCCY 2 cut(s) 295, 533
EcoRII CCWGG 2 cut(s) 207, 569
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 5 cut(s) 48, 225, 279, 537, 641
ErhI CCWWGG 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 4 cut(s) 78, 205, 831, 904
FaqI GGGAC 2 cut(s) 478, 868
FatI CATG 4 cut(s) 74, 201, 827, 900
FauI CCCGC 3 cut(s) 648, 930, 943
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 37, 187, 548, 837
FokI GGATG 3 cut(s) 200, 240, 401
FriOI GRGCYC 5 cut(s) 48, 225, 279, 537, 641
Fsp4HI GCNGC 4 cut(s) 37, 187, 548, 837
FspBI CTAG 1 cut(s) 732
GlaI GCGC 2 cut(s) 190, 236
GluI GCNGC 4 cut(s) 37, 187, 548, 837
GsuI CTGGAG 2 cut(s) 110, 286
HaeII RGCGCY 1 cut(s) 238
HapII CCGG 3 cut(s) 183, 279, 386
HgaI GACGC 3 cut(s) 136, 321, 971
HhaI GCGC 2 cut(s) 191, 237
Hin1I GRCGYC 4 cut(s) 102, 147, 243, 332
Hin1II CATG 4 cut(s) 78, 205, 831, 904
Hin6I GCGC 2 cut(s) 189, 235
HinP1I GCGC 2 cut(s) 189, 235
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 5 cut(s) 28, 584, 881, 889, 989
HpaII CCGG 3 cut(s) 183, 279, 386
HphI GGTGA 2 cut(s) 64, 427
Hpy166II GTNNAC 4 cut(s) 151, 175, 606, 803
Hpy188I TCNGA 4 cut(s) 227, 241, 589, 777
Hpy188III TCNNGA 4 cut(s) 127, 303, 893, 986
Hpy8I GTNNAC 4 cut(s) 151, 175, 606, 803
Hpy99I CGWCG 8 cut(s) 10, 104, 245, 248, 251, 317, 320, 337
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 3 cut(s) 415, 603, 617
HpyCH4IV ACGT 4 cut(s) 102, 243, 312, 849
HpyCH4V TGCA 5 cut(s) 19, 707, 788, 821, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 818, 833
HpyF3I CTNAG 4 cut(s) 483, 495, 552, 588
HpySE526I ACGT 4 cut(s) 102, 243, 312, 849
Hsp92I GRCGYC 4 cut(s) 102, 147, 243, 332
Hsp92II CATG 4 cut(s) 78, 205, 831, 904
HspAI GCGC 2 cut(s) 189, 235
Kzo9I GATC 6 cut(s) 198, 261, 364, 489, 507, 737
LmnI GCTCC 3 cut(s) 71, 242, 636
Lsp1109I GCAGC 2 cut(s) 559, 823
MaeI CTAG 1 cut(s) 732
MaeII ACGT 4 cut(s) 102, 243, 312, 849
MaeIII GTNAC 2 cut(s) 391, 850
MalI GATC 6 cut(s) 200, 263, 366, 491, 509, 739
MbiI CCGCTC 1 cut(s) 39
MboI GATC 6 cut(s) 198, 261, 364, 489, 507, 737
MboII GAAGA 4 cut(s) 148, 256, 352, 961
MfeI CAATTG 2 cut(s) 783, 822
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 6 cut(s) 48, 225, 279, 537, 641, 660
MluCI AATT 5 cut(s) 559, 715, 783, 794, 822
MlyI GAGTC 3 cut(s) 593, 890, 998
MmeI TCCRAC 2 cut(s) 264, 501
MseI TTAA 2 cut(s) 768, 929
MspA1I CMGCKG 1 cut(s) 938
MspI CCGG 3 cut(s) 183, 279, 386
MspR9I CCNGG 3 cut(s) 209, 279, 571
MunI CAATTG 2 cut(s) 783, 822
MvaI CCWGG 2 cut(s) 209, 571
MvnI CGCG 2 cut(s) 189, 219
MwoI GCNNNNNNNGC 2 cut(s) 818, 833
NciI CCSGG 1 cut(s) 279
NdeII GATC 6 cut(s) 198, 261, 364, 489, 507, 737
NlaIII CATG 4 cut(s) 78, 205, 831, 904
NlaIV GGNNCC 7 cut(s) 277, 283, 325, 466, 534, 535, 638
NmeAIII GCCGAG 4 cut(s) 161, 193, 217, 538
NmuCI GTSAC 2 cut(s) 391, 850
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 2 cut(s) 28, 889
Pfl23II CGTACG 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 474
PkrI GCNGC 4 cut(s) 38, 188, 549, 838
PleI GAGTC 3 cut(s) 592, 889, 997
PpsI GAGTC 3 cut(s) 592, 889, 997
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 207, 569
PspGI CCWGG 2 cut(s) 207, 569
PspLI CGTACG 1 cut(s) 66
PspN4I GGNNCC 7 cut(s) 277, 283, 325, 466, 534, 535, 638
PspOMI GGGCCC 2 cut(s) 275, 533
PspPI GGNCC 9 cut(s) 34, 205, 275, 276, 281, 295, 465, 533, 534
PsuI RGATCY 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 245
RsaI GTAC 5 cut(s) 23, 68, 593, 605, 804
RsaNI GTAC 5 cut(s) 22, 67, 592, 604, 803
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 768, 929
SatI GCNGC 4 cut(s) 37, 187, 548, 837
Sau3AI GATC 6 cut(s) 198, 261, 364, 489, 507, 737
Sau96I GGNCC 9 cut(s) 34, 205, 275, 276, 281, 295, 465, 533, 534
SchI GAGTC 3 cut(s) 593, 890, 998
ScrFI CCNGG 3 cut(s) 209, 279, 571
SduI GDGCHC 6 cut(s) 48, 225, 279, 537, 641, 660
SfcI CTRYAG 1 cut(s) 909
SinI GGWCC 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 5 cut(s) 559, 715, 783, 794, 822
SsiI CCGC 6 cut(s) 37, 187, 217, 641, 923, 936
SspMI CTAG 1 cut(s) 732
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 3 cut(s) 207, 277, 569
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 3 cut(s) 415, 603, 617
TaiI ACGT 4 cut(s) 105, 246, 315, 852
TaqI TCGA 5 cut(s) 8, 99, 159, 318, 736
TasI AATT 5 cut(s) 559, 715, 783, 794, 822
TatI WGTACW 2 cut(s) 21, 603
TauI GCSGC 2 cut(s) 39, 189
TfiI GAWTC 2 cut(s) 28, 889
Tru1I TTAA 2 cut(s) 768, 929
Tru9I TTAA 2 cut(s) 768, 929
TscAI CASTG 5 cut(s) 475, 499, 606, 667, 747
TseFI GTSAC 2 cut(s) 391, 850
TseI GCWGC 2 cut(s) 547, 836
Tsp45I GTSAC 2 cut(s) 391, 850
TspDTI ATGAA 3 cut(s) 440, 807, 917
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 5 cut(s) 475, 499, 606, 667, 747
Tth111I GACNNNGTC 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 465
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 732
ZraI GACGTC 2 cut(s) 103, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.