AT1G04880

high mobility group

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
1375824 .. 1379228
3405 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04880.1

Sequence Viewer

Length: 1347 bp
ATGGCATCAAGCTCTTGTCTCAAGCAAGGGTCAGTGCCAATGAACAATGTTTGTGTTACCCCTGAAGCAACGTATGAGGCTGTGGTTGCAGACCCTAGGCTTTTCATGACTTCCTTGGAAAGGCTGCACTCTCTCTTGGGTACTAAATTCATGGTTCCGATCATAGGAGGAAGAGATTTGGACTTGCACAAGCTTTTCGTTGAGGTAACCTCACGTGGCGGAATCAATAAGATACTTAATGAAAGGAGATGGAAAGAAGTAACTGCTACATTTGTCTTTCCTCCAACTGCAACAAACGCATCATATGTTCTGCGCAAATACTACTTCTCGCTGCTGAACAATTATGAGCAAATCTATTTCTTCAGATCTAATGGTCAGATTCCTCCAGACTCTATGCAGAGTCCATCTGCTAGACCATGCTTTATTCAGGGAGCCATTAGACCTTCACAAGAACTTCAAGCTCTAACCTTTACCCCACAGCCCAAGATCAATACTGCAGAATTCCTCGGAGGATCACTTGCTGGATCAAATGTGGTTGGAGTGATCGATGGAAAATTCGAAAGTGGTTACCTTGTAACTGTAACAATTGGATCAGAGCAGCTTAAAGGAGTTCTGTATCAGCTTCTTCCTCAGAACACAGTTTCTTATCAAACTCCGCAACAGAGTCATGGTGTCCTCCCGAACACTCTGAACATTTCTGCCAATCCTCAGGGGGTTGCAGGAGGAGTAACAAAACGCCGTAGGAGAAGAAAGAAATCAGAGATCAAAAGACGTGATCCTGATCATCCAAAACCCAACAGAAGTGGTTATAACTTCTTTTTCGCAGAGCAGCACGCGAGACTTAAACCGCTTCATCCTGGTAAGGATAGGGATATCAGCAGGATGATTGGTGAGCTATGGAACAAGCTGAATGAAGACGAAAAATTGATTTACCAAGGGAAGGCAATGGAGGACAAAGAGCGATACAGAACTGAAATGGAAGATTACAGAGAGAAAAAAAAGAATGGACAGCTCATAAGCAACGCTGTTCCGCTGCAACAGAGACTTCCGGAGCAAAACGTAGACATGGCTGAAGCTGACCTTCCAATTGATGAAGTCGAAGAAGATGACGAAGAAGGTGATTCAAGCGGATCCTCAGGCGAAAGCGAGCCACATGATGATCAGAGCATAGAAACTGATCCTGAATTGGAAGAGCCATCTCTGAATCCCTCAGGTCCAAACCTAAACCCTAATCCGACTGAGATAGTGGTGGCTCCTAAGGAGAAAAACGGCGATGTTGTGATGGAAACATCTCCATTGAAGAAAGCCGATGAGCCAACTGTGGCGGTGACTGCTGAGCAGAACTGA

Protein Analysis

448

Amino Acids

50.0

Weight (kDa)

5.44

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 32 - 116 3.9e-19 ARID/BRIGHT DNA binding domain
HMG_box_2 PF09011 260 - 329 9.7e-11 HMG-box domain
HMG_box PF00505 263 - 330 1.7e-14 HMG (high mobility group) box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 810
Acc16I TGCGCA 1 cut(s) 314
AccI GTMKAC 1 cut(s) 1062
AccII CGCG 1 cut(s) 836
AccIII TCCGGA 1 cut(s) 1048
AciI CCGC 6 cut(s) 219, 656, 848, 1031, 1128, 1325
AclWI GGATC 7 cut(s) 520, 532, 598, 770, 1125, 1138, 1172
AcsI RAATTY 3 cut(s) 146, 500, 554
AcuI CTGAAG 3 cut(s) 84, 346, 1092
AcvI CACGTG 1 cut(s) 215
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 3 cut(s) 120, 164, 940
AgsI TTSAA 3 cut(s) 458, 1125, 1300
AjiI CACGTC 1 cut(s) 773
AjnI CCWGG 1 cut(s) 856
AluBI AGCT 9 cut(s) 12, 193, 461, 601, 622, 895, 907, 1012, 1076
AluI AGCT 9 cut(s) 12, 193, 461, 601, 622, 895, 907, 1012, 1076
Alw26I GTCTC 3 cut(s) 23, 832, 1036
AlwI GGATC 7 cut(s) 520, 532, 598, 770, 1125, 1138, 1172
Aor13HI TCCGGA 1 cut(s) 1048
ApeKI GCWGC 5 cut(s) 124, 331, 598, 829, 1033
ApoI RAATTY 3 cut(s) 146, 500, 554
AspA2I CCTAGG 1 cut(s) 95
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 1214
AsuHPI GGTGA 3 cut(s) 902, 1130, 1339
AsuII TTCGAA 1 cut(s) 558
AvaII GGWCC 1 cut(s) 1214
AvrII CCTAGG 1 cut(s) 95
AxyI CCTNAGG 4 cut(s) 708, 1135, 1210, 1257
BamHI GGATCC 1 cut(s) 1130
BbrPI CACGTG 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 921
BbvI GCAGC 5 cut(s) 111, 318, 610, 841, 1020
BccI CCATC 5 cut(s) 243, 412, 542, 1204, 1276
BceAI ACGGC 2 cut(s) 723, 1285
BciT130I CCWGG 1 cut(s) 858
BclI TGATCA 2 cut(s) 781, 1159
BcoDI GTCTC 3 cut(s) 23, 832, 1036
BfaI CTAG 2 cut(s) 96, 411
BfmI CTRYAG 1 cut(s) 495
BglII AGATCT 1 cut(s) 365
BisI GCNGC 5 cut(s) 125, 332, 599, 830, 1034
BlnI CCTAGG 1 cut(s) 95
BlpI GCTNAGC 1 cut(s) 1335
BlsI GCNGC 5 cut(s) 126, 333, 600, 831, 1035
Bme1390I CCNGG 1 cut(s) 858
Bme18I GGWCC 1 cut(s) 1214
BmgBI CACGTC 1 cut(s) 773
BmgT120I GGNCC 1 cut(s) 1214
BmiI GGNNCC 4 cut(s) 156, 433, 1132, 1254
BmrFI CCNGG 1 cut(s) 858
BmsI GCATC 2 cut(s) 14, 308
BpiI GAAGAC 1 cut(s) 921
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BpmI CTGGAG 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 1335
Bpu14I TTCGAA 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 5
Bsa29I ATCGAT 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 780
BsaJI CCNNGG 4 cut(s) 95, 114, 505, 934
BsaWI WCCGGW 1 cut(s) 1048
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 164, 940
Bse21I CCTNAGG 4 cut(s) 708, 1135, 1210, 1257
Bse3DI GCAATG 1 cut(s) 951
Bse8I GATNNNNATC 1 cut(s) 780
BseAI TCCGGA 1 cut(s) 1048
BseBI CCWGG 1 cut(s) 858
BseCI ATCGAT 1 cut(s) 546
BseDI CCNNGG 4 cut(s) 95, 114, 505, 934
BseGI GGATG 3 cut(s) 784, 853, 888
BseJI GATNNNNATC 1 cut(s) 780
BseLI CCNNNNNNNGG 3 cut(s) 120, 164, 940
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 6 cut(s) 644, 722, 1149, 1224, 1230, 1326
BseRI GAGGAG 1 cut(s) 738
BseXI GCAGC 5 cut(s) 111, 318, 610, 841, 1020
BsgI GTGCAG 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 836
BshVI ATCGAT 1 cut(s) 546
BsiSI CCGG 1 cut(s) 1049
BslI CCNNNNNNNGG 3 cut(s) 120, 164, 940
BsmAI GTCTC 3 cut(s) 23, 832, 1036
Bsp119I TTCGAA 1 cut(s) 558
Bsp13I TCCGGA 1 cut(s) 1048
Bsp1720I GCTNAGC 1 cut(s) 1335
BspACI CCGC 6 cut(s) 219, 656, 848, 1031, 1128, 1325
BspCNI CTCAG 6 cut(s) 643, 721, 1148, 1223, 1231, 1327
BspDI ATCGAT 1 cut(s) 546
BspEI TCCGGA 1 cut(s) 1048
BspFNI CGCG 1 cut(s) 836
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 4 cut(s) 156, 433, 1132, 1254
BspMAI CTGCAG 1 cut(s) 499
BspPI GGATC 7 cut(s) 520, 532, 598, 770, 1125, 1138, 1172
BspQI GCTCTTC 1 cut(s) 1185
BspT104I TTCGAA 1 cut(s) 558
BsrDI GCAATG 1 cut(s) 951
BssECI CCNNGG 4 cut(s) 95, 114, 505, 934
BssT1I CCWWGG 3 cut(s) 95, 114, 934
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 3 cut(s) 580, 640, 1321
Bst6I CTCTTC 2 cut(s) 166, 1185
BstBAI YACGTR 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 558
BstC8I GCNNGC 2 cut(s) 834, 1148
BstDEI CTNAG 7 cut(s) 630, 708, 1135, 1210, 1239, 1257, 1335
BstEII GGTNACC 2 cut(s) 205, 566
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 3 cut(s) 784, 853, 888
BstFNI CGCG 1 cut(s) 836
BstHHI GCGC 1 cut(s) 315
BstMAI GTCTC 3 cut(s) 23, 832, 1036
BstMWI GCNNNNNNNGC 3 cut(s) 86, 296, 1331
BstNI CCWGG 1 cut(s) 858
BstPI GGTNACC 2 cut(s) 205, 566
BstSCI CCNGG 1 cut(s) 856
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 5 cut(s) 111, 318, 610, 841, 1020
BstV2I GAAGAC 1 cut(s) 921
BstX2I RGATCY 2 cut(s) 365, 1130
BstYI RGATCY 2 cut(s) 365, 1130
Bsu15I ATCGAT 1 cut(s) 546
Bsu36I CCTNAGG 4 cut(s) 708, 1135, 1210, 1257
BsuTUI ATCGAT 1 cut(s) 546
BtgZI GCGATG 1 cut(s) 1287
BtrI CACGTC 1 cut(s) 773
BtsCI GGATG 3 cut(s) 784, 853, 888
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 834, 1148
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 1214
ClaI ATCGAT 1 cut(s) 546
Csp6I GTAC 1 cut(s) 141
CspCI CAANNNNNGTGG 2 cut(s) 784, 819
CviAII CATG 6 cut(s) 106, 151, 417, 668, 1066, 1154
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 7 cut(s) 630, 708, 1135, 1210, 1239, 1257, 1335
Eam1104I CTCTTC 2 cut(s) 166, 1185
EarI CTCTTC 2 cut(s) 166, 1185
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 3 cut(s) 95, 114, 934
Eco32I GATATC 1 cut(s) 874
Eco47I GGWCC 1 cut(s) 1214
Eco57I CTGAAG 3 cut(s) 84, 346, 1092
Eco72I CACGTG 1 cut(s) 215
Eco81I CCTNAGG 4 cut(s) 708, 1135, 1210, 1257
Eco91I GGTNACC 2 cut(s) 205, 566
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoO65I GGTNACC 2 cut(s) 205, 566
EcoRI GAATTC 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 856
EcoRV GATATC 1 cut(s) 874
EcoT14I CCWWGG 3 cut(s) 95, 114, 934
ErhI CCWWGG 3 cut(s) 95, 114, 934
FaeI CATG 6 cut(s) 109, 154, 420, 671, 1069, 1157
FalI AAGNNNNNCTT 2 cut(s) 1065, 1097
FatI CATG 6 cut(s) 105, 150, 416, 667, 1065, 1153
FauNDI CATATG 1 cut(s) 304
FbaI TGATCA 2 cut(s) 781, 1159
FblI GTMKAC 1 cut(s) 1062
Fnu4HI GCNGC 5 cut(s) 125, 332, 599, 830, 1034
FokI GGATG 3 cut(s) 771, 840, 895
Fsp4HI GCNGC 5 cut(s) 125, 332, 599, 830, 1034
FspBI CTAG 2 cut(s) 96, 411
FspI TGCGCA 1 cut(s) 314
GlaI GCGC 1 cut(s) 314
GluI GCNGC 5 cut(s) 125, 332, 599, 830, 1034
GsuI CTGGAG 1 cut(s) 369
HapII CCGG 1 cut(s) 1049
HhaI GCGC 1 cut(s) 315
Hin1II CATG 6 cut(s) 109, 154, 420, 671, 1069, 1157
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 7 cut(s) 222, 379, 389, 400, 664, 1121, 1204
HpaII CCGG 1 cut(s) 1049
HphI GGTGA 3 cut(s) 902, 1130, 1339
Hpy166II GTNNAC 1 cut(s) 1063
Hpy188III TCNNGA 6 cut(s) 106, 386, 679, 779, 1049, 1181
Hpy8I GTNNAC 1 cut(s) 1063
HpyAV CCTTC 4 cut(s) 453, 934, 1091, 1109
HpyCH4III ACNGT 3 cut(s) 580, 640, 1321
HpyCH4IV ACGT 4 cut(s) 71, 214, 772, 1059
HpyCH4V TGCA 8 cut(s) 89, 127, 187, 290, 397, 497, 719, 1036
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 296, 1331
HpyF3I CTNAG 7 cut(s) 630, 708, 1135, 1210, 1239, 1257, 1335
HpySE526I ACGT 4 cut(s) 71, 214, 772, 1059
Hsp92II CATG 6 cut(s) 109, 154, 420, 671, 1069, 1157
HspAI GCGC 1 cut(s) 313
Kpn2I TCCGGA 1 cut(s) 1048
Ksp22I TGATCA 2 cut(s) 781, 1159
LguI GCTCTTC 1 cut(s) 1185
LmnI GCTCC 3 cut(s) 431, 1051, 1258
Lsp1109I GCAGC 5 cut(s) 111, 318, 610, 841, 1020
LweI GCATC 2 cut(s) 14, 308
MaeI CTAG 2 cut(s) 96, 411
MaeII ACGT 4 cut(s) 71, 214, 772, 1059
MaeIII GTNAC 8 cut(s) 55, 205, 259, 566, 574, 580, 727, 1327
MfeI CAATTG 2 cut(s) 585, 1086
MflI RGATCY 2 cut(s) 365, 1130
MluCI AATT 8 cut(s) 146, 340, 500, 554, 585, 923, 1086, 1184
MlyI GAGTC 3 cut(s) 383, 409, 673
MmeI TCCRAC 3 cut(s) 308, 517, 1259
MroI TCCGGA 1 cut(s) 1048
MseI TTAA 3 cut(s) 237, 603, 843
MspA1I CMGCKG 1 cut(s) 1033
MspI CCGG 1 cut(s) 1049
MspR9I CCNGG 1 cut(s) 858
MunI CAATTG 2 cut(s) 585, 1086
MvaI CCWGG 1 cut(s) 858
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 3 cut(s) 86, 296, 1331
NdeI CATATG 1 cut(s) 304
NlaIII CATG 6 cut(s) 109, 154, 420, 671, 1069, 1157
NlaIV GGNNCC 4 cut(s) 156, 433, 1132, 1254
NmuCI GTSAC 1 cut(s) 1327
NsbI TGCGCA 1 cut(s) 314
NspV TTCGAA 1 cut(s) 558
PagI TCATGA 1 cut(s) 105
PciSI GCTCTTC 1 cut(s) 1185
PfeI GAWTC 4 cut(s) 222, 379, 1121, 1204
PkrI GCNGC 5 cut(s) 126, 333, 600, 831, 1035
PleI GAGTC 3 cut(s) 383, 408, 672
PmaCI CACGTG 1 cut(s) 215
PmlI CACGTG 1 cut(s) 215
PpsI GAGTC 3 cut(s) 383, 408, 672
Ppu21I YACGTR 1 cut(s) 215
PsiI TTATAA 1 cut(s) 810
Psp6I CCWGG 1 cut(s) 856
PspCI CACGTG 1 cut(s) 215
PspEI GGTNACC 2 cut(s) 205, 566
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 4 cut(s) 156, 433, 1132, 1254
PspPI GGNCC 1 cut(s) 1214
PstI CTGCAG 1 cut(s) 499
PsuI RGATCY 2 cut(s) 365, 1130
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 1185
SaqAI TTAA 3 cut(s) 237, 603, 843
SatI GCNGC 5 cut(s) 125, 332, 599, 830, 1034
Sau96I GGNCC 1 cut(s) 1214
SchI GAGTC 3 cut(s) 383, 409, 673
ScrFI CCNGG 1 cut(s) 858
SfaNI GCATC 2 cut(s) 14, 308
SfcI CTRYAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 558
SinI GGWCC 1 cut(s) 1214
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 8 cut(s) 146, 340, 500, 554, 585, 923, 1086, 1184
SsiI CCGC 6 cut(s) 219, 656, 848, 1031, 1128, 1325
SspMI CTAG 2 cut(s) 96, 411
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 3 cut(s) 95, 114, 934
TaaI ACNGT 3 cut(s) 580, 640, 1321
TaiI ACGT 4 cut(s) 74, 217, 775, 1062
TaqI TCGA 3 cut(s) 546, 558, 1098
TasI AATT 8 cut(s) 146, 340, 500, 554, 585, 923, 1086, 1184
TfiI GAWTC 4 cut(s) 222, 379, 1121, 1204
Tru1I TTAA 3 cut(s) 237, 603, 843
Tru9I TTAA 3 cut(s) 237, 603, 843
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 1327
TseI GCWGC 5 cut(s) 124, 331, 598, 829, 1033
Tsp45I GTSAC 1 cut(s) 1327
TspDTI ATGAA 7 cut(s) 56, 94, 139, 255, 842, 927, 1107
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 1214
XagI CCTNNNNNAGG 1 cut(s) 118
XapI RAATTY 3 cut(s) 146, 500, 554
XmaJI CCTAGG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 1062
XspI CTAG 2 cut(s) 96, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.