Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007195

Physical Location & Seq

Genomic Coordinates Forward (+)

47497273 .. 47503334

Gene Structure 6062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG193400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTACAGGTGCAACCATATATTAAATGGTAGAAGTAATTCTTTGGTTATGTACTTGTCTCTGTTCTCCTGTATGTCAATAATTTCTTGTATTTCTGTCTTTCTGTTGACCCACTCCTGTTTCAACTGTAGGATCCCTATAATAGGAGGAAGAGAGTTAGACTTGCATCGACTGTTTGTGGAGGTAACTTCCCGTGGTGGTATGGCAAAGATTGTTAGAGATAGAAGATGGAAGGAAGTTACCGCTGTATTCAACTTCCCCTCCACAGCTACAAATGCTTCTTTTGTGCTGCGGAAATATTATAATTCGTTGCTTCTCCACTATGAACAAATATATTATTTCAAAGCTCAAGCATGGAATCCTCTCTCTTCTGATATTTCACAGAACCCTACCATGACACCAGGTCTAGCTCCAAGGGGAGGAACTAAACGAAAATCAACTGAAGCTCAGACACTTCTGCTTCAGCAACCACAGAAAATTCCAGAGATTCCTGGAGCCGGGACACCAGCACCGTCAGAAGATGACACTGTGTTAGGGTTTATAGATGGGAAATTCGAAAGTGGATATCTTGTTACAGTCACCAAAGGCACAGAGAAGTTAAGTGGTGTACTGTACCAAGTTCCACAGAATCCAGTACAGGAGGTTCCACAAGGCCCACAGAATTATAGCATGGTGGTCAACAGAAACGACAGTACCTCAGCTGTACCTGTTCCCCATCGTCGTCGACGAAGGAAGAAATCTGAGATAAAAAGGAGGGACCCTGCTCACCCAAAACCGAATAGAAGTGGGTATAACTTTTTCTTTGCTGAACAGCATGCAAGGCTGAAGCCACTTCATCCGGGGAAGGATAGAGAGATAAGTAGAATGATTGGTGAATTGTGGAATAAATTGAAGGAGTCTGATAAAGGAGTGTATCAGGAGAAAGCCGTGAAAGATAAAGAGAGGTACCGAGTAGAAATGGAGGAATACCGGGAGAGGTTGAAGGCTGCTCAAGTCATCAGTGATGCAGTCCCACTACAGCAGCGGTCTCCTGAAGCAGATGCAAGTATGGCAGAATCAGAAACCAAGATTGAAGAAACCGAGCCTGGCGACTCTCCTGAAACTGCAGATGAAAGTAGCGAGAGTAGTTCTAGCAAATCAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000217 GO:0000400 GO:0000902 GO:0000904 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042995 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

382

Amino Acids

43.26

Weight (kDa)

9.16

Isoelectric Point (pI)

60.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	44 - 109	5.1e-17	ARID/BRIGHT DNA binding domain
HMG_box_2	PF09011	254 - 323	2.1e-10	HMG-box domain
HMG_box	PF00505	257 - 324	2.5e-15	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04880
fragaria_vesca	FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370
malus_domestica	MD04G1008800.v1.1
prunus_persica	Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1
pyrus_communis	pycom04g00660
rosa_chinensis	RchiOBHm_Chr4g0415261
rosa_laevigata	RLG00000008083
rosa_multiflora	Rmu_sc0003551.1_g000023
rosa_roxburghii	Rroxscaffold_5G00359070
rosa_rugosa	Rorug04G0132600 Rorug04G0132700 Rorug04G0132800
rosa_samantha	Rh4AG193400 Rh4BG192000 Rh4CG204500 Rh4DG191300
rosa_wichuraiana	Rw4G016460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
Acc65I	GGTACC	1 cut(s)	945
AccB1I	GGYRCC	1 cut(s)	945
AccI	GTMKAC	1 cut(s)	724
AciI	CCGC	3 cut(s)	243, 292, 1024
AclWI	GGATC	2 cut(s)	127, 140
AcsI	RAATTY	2 cut(s)	477, 551
AcuI	CTGAAG	4 cut(s)	446, 462, 845, 1053
AfaI	GTAC	8 cut(s)	5, 53, 609, 614, 636, 694, 705, 947
AfiI	CCNNNNNNNGG	3 cut(s)	143, 419, 497
AgsI	TTSAA	6 cut(s)	124, 253, 343, 892, 982, 1073
AhdI	GACNNNNNGTC	1 cut(s)	402
AjnI	CCWGG	3 cut(s)	400, 490, 1084
AluBI	AGCT	5 cut(s)	269, 347, 410, 446, 701
AluI	AGCT	5 cut(s)	269, 347, 410, 446, 701
Alw26I	GTCTC	2 cut(s)	63, 1032
AlwI	GGATC	2 cut(s)	127, 140
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	3 cut(s)	289, 986, 1021
ApoI	RAATTY	2 cut(s)	477, 551
Asp700I	GAANNNNTTC	1 cut(s)	37
Asp718I	GGTACC	1 cut(s)	945
AspS9I	GGNCC	2 cut(s)	653, 757
AsuC2I	CCSGG	3 cut(s)	499, 840, 971
AsuHPI	GGTGA	3 cut(s)	571, 758, 884
AsuII	TTCGAA	1 cut(s)	555
AvaII	GGWCC	1 cut(s)	757
BaeI	ACNNNNGTAYC	2 cut(s)	676, 709
BamHI	GGATCC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	945
BbvCI	CCTCAGC	1 cut(s)	697
BbvI	GCAGC	3 cut(s)	276, 973, 1033
BccI	CCATC	3 cut(s)	222, 539, 723
BceAI	ACGGC	1 cut(s)	911
BciT130I	CCWGG	3 cut(s)	402, 492, 1086
BcnI	CCSGG	3 cut(s)	499, 840, 971
BcoDI	GTCTC	2 cut(s)	63, 1032
BfaI	CTAG	2 cut(s)	407, 1131
BfmI	CTRYAG	3 cut(s)	127, 1016, 1104
BisI	GCNGC	3 cut(s)	290, 987, 1022
BlsI	GCNGC	3 cut(s)	291, 988, 1023
Bme1390I	CCNGG	6 cut(s)	402, 492, 499, 840, 971, 1086
Bme18I	GGWCC	1 cut(s)	757
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmgT120I	GGNCC	2 cut(s)	653, 757
BmiI	GGNNCC	6 cut(s)	134, 496, 645, 758, 759, 947
BmrFI	CCNGG	6 cut(s)	402, 492, 499, 840, 971, 1086
BmsI	GCATC	3 cut(s)	175, 994, 1030
BpmI	CTGGAG	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	697
Bpu14I	TTCGAA	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	333, 975
BpuMI	CCSGG	3 cut(s)	499, 840, 971
BsaI	GGTCTC	1 cut(s)	1032
BsaJI	CCNNGG	3 cut(s)	193, 413, 839
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 419, 497
Bse1I	ACTGG	1 cut(s)	632
BseBI	CCWGG	3 cut(s)	402, 492, 1086
BseDI	CCNNGG	3 cut(s)	193, 413, 839
BseGI	GGATG	1 cut(s)	835
BseLI	CCNNNNNNNGG	3 cut(s)	143, 419, 497
BseMII	CTCAG	3 cut(s)	461, 711, 732
BseNI	ACTGG	1 cut(s)	632
BseXI	GCAGC	3 cut(s)	276, 973, 1033
BshFI	GGCC	1 cut(s)	654
BshNI	GGYRCC	1 cut(s)	945
BsiSI	CCGG	3 cut(s)	498, 839, 970
BslFI	GGGAC	3 cut(s)	514, 770, 995
BslI	CCNNNNNNNGG	3 cut(s)	143, 419, 497
BsmAI	GTCTC	2 cut(s)	63, 1032
BsmFI	GGGAC	3 cut(s)	514, 770, 995
BsnI	GGCC	1 cut(s)	654
Bso31I	GGTCTC	1 cut(s)	1032
Bsp119I	TTCGAA	1 cut(s)	555
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	3 cut(s)	243, 292, 1024
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	3 cut(s)	460, 710, 733
BspLI	GGNNCC	6 cut(s)	134, 496, 645, 758, 759, 947
BspMAI	CTGCAG	1 cut(s)	1108
BspPI	GGATC	2 cut(s)	127, 140
BspT104I	TTCGAA	1 cut(s)	555
BspT107I	GGYRCC	1 cut(s)	945
BspTNI	GGTCTC	1 cut(s)	1032
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	3 cut(s)	193, 413, 839
BssMI	GATC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	413
Bst2UI	CCWGG	3 cut(s)	402, 492, 1086
Bst4CI	ACNGT	7 cut(s)	128, 174, 513, 529, 577, 612, 692
Bst6I	CTCTTC	2 cut(s)	145, 373
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	816
BstDEI	CTNAG	3 cut(s)	447, 697, 741
BstDSI	CCRYGG	1 cut(s)	193
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	835
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	2 cut(s)	63, 1032
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 820, 1049
BstNI	CCWGG	3 cut(s)	402, 492, 1086
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	6 cut(s)	400, 490, 497, 838, 969, 1084
BstSFI	CTRYAG	3 cut(s)	127, 1016, 1104
BstV1I	GCAGC	3 cut(s)	276, 973, 1033
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	835
BtsIMutI	CAGTG	2 cut(s)	525, 1006
Cac8I	GCNNGC	1 cut(s)	816
Cfr13I	GGNCC	2 cut(s)	653, 757
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	8 cut(s)	4, 52, 608, 613, 635, 693, 704, 946
CviAII	CATG	4 cut(s)	354, 394, 670, 815
CviQI	GTAC	8 cut(s)	4, 52, 608, 613, 635, 693, 704, 946
DdeI	CTNAG	3 cut(s)	447, 697, 741
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DriI	GACNNNNNGTC	1 cut(s)	402
Eam1104I	CTCTTC	2 cut(s)	145, 373
Eam1105I	GACNNNNNGTC	1 cut(s)	402
EarI	CTCTTC	2 cut(s)	145, 373
Eco130I	CCWWGG	1 cut(s)	413
Eco31I	GGTCTC	1 cut(s)	1032
Eco32I	GATATC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	757
Eco57I	CTGAAG	4 cut(s)	446, 462, 845, 1053
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	757
EcoRII	CCWGG	3 cut(s)	400, 490, 1084
EcoRV	GATATC	1 cut(s)	566
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	4 cut(s)	357, 397, 673, 818
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FaqI	GGGAC	3 cut(s)	514, 770, 995
FatI	CATG	4 cut(s)	353, 393, 669, 814
FblI	GTMKAC	1 cut(s)	724
Fnu4HI	GCNGC	3 cut(s)	290, 987, 1022
FokI	GGATG	1 cut(s)	822
Fsp4HI	GCNGC	3 cut(s)	290, 987, 1022
FspBI	CTAG	2 cut(s)	407, 1131
GluI	GCNGC	3 cut(s)	290, 987, 1022
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	654
HapII	CCGG	3 cut(s)	498, 839, 970
Hin1II	CATG	4 cut(s)	357, 397, 673, 818
HincII	GTYRAC	3 cut(s)	108, 679, 725
HindII	GTYRAC	3 cut(s)	108, 679, 725
HinfI	GANTC	6 cut(s)	358, 487, 628, 896, 1055, 1091
HpaII	CCGG	3 cut(s)	498, 839, 970
HphI	GGTGA	3 cut(s)	571, 758, 884
Hpy166II	GTNNAC	4 cut(s)	108, 608, 679, 725
Hpy188I	TCNGA	7 cut(s)	373, 450, 517, 742, 901, 1060, 1141
Hpy188III	TCNNGA	4 cut(s)	482, 917, 1031, 1097
Hpy8I	GTNNAC	4 cut(s)	108, 608, 679, 725
Hpy99I	CGWCG	3 cut(s)	723, 726, 729
HpyAV	CCTTC	5 cut(s)	226, 723, 838, 886, 976
HpyCH4III	ACNGT	7 cut(s)	128, 174, 513, 529, 577, 612, 692
HpyCH4V	TGCA	6 cut(s)	12, 166, 818, 1007, 1043, 1106
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 820, 1049
HpyF3I	CTNAG	3 cut(s)	447, 697, 741
Hsp92II	CATG	4 cut(s)	357, 397, 673, 818
KflI	GGGWCCC	1 cut(s)	757
KpnI	GGTACC	1 cut(s)	949
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	415, 494
Lsp1109I	GCAGC	3 cut(s)	276, 973, 1033
LweI	GCATC	3 cut(s)	175, 994, 1030
MabI	ACCWGGT	1 cut(s)	400
MaeI	CTAG	2 cut(s)	407, 1131
MaeIII	GTNAC	4 cut(s)	184, 238, 571, 577
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	6 cut(s)	162, 237, 360, 530, 745, 1085
MflI	RGATCY	1 cut(s)	132
MluCI	AATT	8 cut(s)	37, 81, 304, 477, 551, 661, 875, 887
MlyI	GAGTC	2 cut(s)	905, 1085
MroXI	GAANNNNTTC	1 cut(s)	37
MseI	TTAA	2 cut(s)	23, 599
MspA1I	CMGCKG	3 cut(s)	245, 701, 1024
MspI	CCGG	3 cut(s)	498, 839, 970
MspR9I	CCNGG	6 cut(s)	402, 492, 499, 840, 971, 1086
MvaI	CCWGG	3 cut(s)	402, 492, 1086
MwoI	GCNNNNNNNGC	3 cut(s)	275, 820, 1049
NciI	CCSGG	3 cut(s)	499, 840, 971
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	4 cut(s)	357, 397, 673, 818
NlaIV	GGNNCC	6 cut(s)	134, 496, 645, 758, 759, 947
NmuCI	GTSAC	1 cut(s)	577
NspI	RCATGY	1 cut(s)	818
NspV	TTCGAA	1 cut(s)	555
PaeI	GCATGC	1 cut(s)	818
PcsI	WCGNNNNNNNCGW	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	37
PfeI	GAWTC	4 cut(s)	358, 487, 628, 1055
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	3 cut(s)	291, 988, 1023
PleI	GAGTC	2 cut(s)	904, 1085
PpsI	GAGTC	2 cut(s)	904, 1085
PpuMI	RGGWCCY	1 cut(s)	757
PsiI	TTATAA	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	757
Psp6I	CCWGG	3 cut(s)	400, 490, 1084
PspGI	CCWGG	3 cut(s)	400, 490, 1084
PspN4I	GGNNCC	6 cut(s)	134, 496, 645, 758, 759, 947
PspPI	GGNCC	2 cut(s)	653, 757
PspPPI	RGGWCCY	1 cut(s)	757
PsrI	GAACNNNNNNTAC	2 cut(s)	627, 659
PstI	CTGCAG	1 cut(s)	1108
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	8 cut(s)	5, 53, 609, 614, 636, 694, 705, 947
RsaNI	GTAC	8 cut(s)	4, 52, 608, 613, 635, 693, 704, 946
SalI	GTCGAC	1 cut(s)	723
SaqAI	TTAA	2 cut(s)	23, 599
SatI	GCNGC	3 cut(s)	290, 987, 1022
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	2 cut(s)	653, 757
SchI	GAGTC	2 cut(s)	905, 1085
ScrFI	CCNGG	6 cut(s)	402, 492, 499, 840, 971, 1086
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	3 cut(s)	175, 994, 1030
SfcI	CTRYAG	3 cut(s)	127, 1016, 1104
SfuI	TTCGAA	1 cut(s)	555
SgrDI	CGTCGACG	1 cut(s)	723
SinI	GGWCC	1 cut(s)	757
SmlI	CTYRAG	2 cut(s)	348, 990
SmoI	CTYRAG	2 cut(s)	348, 990
SphI	GCATGC	1 cut(s)	818
Sse9I	AATT	8 cut(s)	37, 81, 304, 477, 551, 661, 875, 887
SsiI	CCGC	3 cut(s)	243, 292, 1024
SspI	AATATT	1 cut(s)	299
SspMI	CTAG	2 cut(s)	407, 1131
StyD4I	CCNGG	6 cut(s)	400, 490, 497, 838, 969, 1084
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	7 cut(s)	128, 174, 513, 529, 577, 612, 692
TaqI	TCGA	3 cut(s)	169, 555, 724
TasI	AATT	8 cut(s)	37, 81, 304, 477, 551, 661, 875, 887
TatI	WGTACW	4 cut(s)	3, 51, 607, 634
TfiI	GAWTC	4 cut(s)	358, 487, 628, 1055
Tru1I	TTAA	2 cut(s)	23, 599
Tru9I	TTAA	2 cut(s)	23, 599
TscAI	CASTG	2 cut(s)	532, 1006
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	3 cut(s)	289, 986, 1021
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	3 cut(s)	339, 824, 1125
TspRI	CASTG	2 cut(s)	532, 1006
VpaK11BI	GGWCC	1 cut(s)	757
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	2 cut(s)	477, 551
XceI	RCATGY	1 cut(s)	818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	37
XspI	CTAG	2 cut(s)	407, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.