Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007195

Physical Location & Seq

Genomic Coordinates Forward (+)

21276712 .. 21277543

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0132600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGTAATTTCAGTTTGAAGTGCTTGTTCTTAGCAGGTTTGCTGATTTCAACCTTTGCCATGCAACTTTCCGAAGGCCGAGTGGCAAGAAAGGACCTCGGGGTAGACCTCGGTGGTGTTGGGGTTGGTGGCGGTGTTGGGGTTGTTGGCGGTGGCGGTGCAGGAATTGGCCTTGGGCTTGGTGGGAGTGGTTCGGGCGCCGGTGCAGGATCTGGCTCTGGCTCCGGGTCTGGGTCAAGTTCGGAGTCAAGTTCAAGCTCATATTCTTCCTCAAGGTCGAGTTCAAGGTCAGGATCATCGGGTGGGGGCTCTGAAGCTGGTTCTTCTGCTGGATCTTATGCCGGGTCTAGGGCTGGGTCGGGCTCCGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000217 GO:0000400 GO:0000902 GO:0000904 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042995 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

124

Amino Acids

11.07

Weight (kDa)

9.1

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04880
fragaria_vesca	FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370
malus_domestica	MD04G1008800.v1.1
prunus_persica	Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1
pyrus_communis	pycom04g00660
rosa_chinensis	RchiOBHm_Chr4g0415261
rosa_laevigata	RLG00000008083
rosa_multiflora	Rmu_sc0003551.1_g000023
rosa_roxburghii	Rroxscaffold_5G00359070
rosa_rugosa	Rorug04G0132600 Rorug04G0132700 Rorug04G0132800
rosa_samantha	Rh4AG193400 Rh4BG192000 Rh4CG204500 Rh4DG191300
rosa_wichuraiana	Rw4G016460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	365
AciI	CCGC	3 cut(s)	132, 150, 156
AclWI	GGATC	3 cut(s)	217, 301, 340
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	198
AfiI	CCNNNNNNNGG	2 cut(s)	231, 348
AgsI	TTSAA	4 cut(s)	19, 51, 255, 285
AluBI	AGCT	2 cut(s)	258, 317
AluI	AGCT	2 cut(s)	258, 317
AlwI	GGATC	3 cut(s)	217, 301, 340
AlwNI	CAGNNNCTG	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	365
AoxI	GGCC	2 cut(s)	76, 169
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	2 cut(s)	226, 343
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	2 cut(s)	311, 365
BcnI	CCSGG	2 cut(s)	226, 343
BfaI	CTAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	226, 343
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	3 cut(s)	199, 223, 364
BmrFI	CCNGG	2 cut(s)	226, 343
BpuEI	CTTGAG	1 cut(s)	256
BpuMI	CCSGG	2 cut(s)	226, 343
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	97, 109, 172
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 348
Bse118I	RCCGGY	1 cut(s)	200
BseAI	TCCGGA	1 cut(s)	365
BseDI	CCNNGG	3 cut(s)	97, 109, 172
BseLI	CCNNNNNNNGG	2 cut(s)	231, 348
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	2 cut(s)	180, 225
BshFI	GGCC	2 cut(s)	78, 171
BshNI	GGYRCC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	201, 225, 342, 366
BslI	CCNNNNNNNGG	2 cut(s)	231, 348
BsnI	GGCC	2 cut(s)	78, 171
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	311, 365
Bsp13I	TCCGGA	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	209, 293, 332
BspACI	CCGC	3 cut(s)	132, 150, 156
BspANI	GGCC	2 cut(s)	78, 171
BspEI	TCCGGA	1 cut(s)	365
BspLI	GGNNCC	3 cut(s)	199, 223, 364
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	3 cut(s)	217, 301, 340
BspT107I	GGYRCC	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	97, 109, 172
BssMI	GATC	3 cut(s)	209, 293, 332
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	31
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	212, 296, 335
BstMBI	GATC	3 cut(s)	209, 293, 332
BstSCI	CCNGG	2 cut(s)	224, 341
BstX2I	RGATCY	2 cut(s)	209, 332
BstYI	RGATCY	2 cut(s)	209, 332
BsuRI	GGCC	2 cut(s)	78, 171
BveI	ACCTGC	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	212
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	94
CviAII	CATG	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	31
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	3 cut(s)	211, 295, 334
DpnII	GATC	3 cut(s)	209, 293, 332
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	2 cut(s)	311, 365
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	2 cut(s)	311, 365
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	62, 262, 339
FatI	CATG	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	105
FriOI	GRGCYC	2 cut(s)	311, 365
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	199
GsaI	CCCAGC	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	78, 171
HapII	CCGG	4 cut(s)	201, 225, 342, 366
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	4 cut(s)	201, 225, 342, 366
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	73, 244, 313
Hpy188III	TCNNGA	2 cut(s)	291, 366
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	64, 161, 206
HpyF3I	CTNAG	1 cut(s)	31
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	365
Kzo9I	GATC	3 cut(s)	209, 293, 332
LmnI	GCTCC	2 cut(s)	227, 368
MaeI	CTAG	1 cut(s)	348
MalI	GATC	3 cut(s)	211, 295, 334
MboI	GATC	3 cut(s)	209, 293, 332
MboII	GAAGA	2 cut(s)	258, 315
MflI	RGATCY	2 cut(s)	209, 332
MhlI	GDGCHC	2 cut(s)	311, 365
MluCI	AATT	3 cut(s)	7, 165, 370
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	3 cut(s)	107, 119, 280
MroI	TCCGGA	1 cut(s)	365
MseI	TTAA	1 cut(s)	373
MspI	CCGG	4 cut(s)	201, 225, 342, 366
MspR9I	CCNGG	2 cut(s)	226, 343
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	2 cut(s)	226, 343
NdeII	GATC	3 cut(s)	209, 293, 332
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	3 cut(s)	199, 223, 364
NmeAIII	GCCGAG	1 cut(s)	104
PleI	GAGTC	1 cut(s)	253
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	3 cut(s)	199, 223, 364
PspPI	GGNCC	1 cut(s)	94
PspPPI	RGGWCCY	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	2 cut(s)	209, 332
SaqAI	TTAA	1 cut(s)	373
Sau3AI	GATC	3 cut(s)	209, 293, 332
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	226, 343
SduI	GDGCHC	2 cut(s)	311, 365
SetI	ASST	8 cut(s)	40, 56, 99, 111, 260, 278, 290, 319
SfoI	GGCGCC	1 cut(s)	199
SgrAI	CRCCGGYG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	3 cut(s)	7, 165, 370
SsiI	CCGC	3 cut(s)	132, 150, 156
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	224, 341
StyI	CCWWGG	1 cut(s)	172
TaqI	TCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	7, 165, 370
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.