Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007195

Physical Location & Seq

Genomic Coordinates Forward (+)

21316566 .. 21319251

Gene Structure 2686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0132700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGCCGTCTCCGTCGCAATTGGAAGACGAGCTCTTCCCGTCGACGCCGGGAAAGTTCAAGATCGAGCGGGCCCACAACATGAACCGCCAGTTCCACCGCTGCTTCGCCTCCACAAGCACCATGTTCTTGTGGGCCCTCTTCTTGATCGCCCTTACGGCGTCGTATTTGAGTTTCCAGAGCTTCGTCGACTCCGGCAGCCGGTACTTCTCGGCCTCCTGGGGAGGAATCCAGTGGGAGAAGCAGGTCCGCAACTCCGCGCAGATCCACCGCTCCGGCGGCATGTCCGTTCTGGTTACCGGGGCGGCCGGTTTCGTCGGCACCCACGTGTCCATGGCCCTGAAAAAGCGCGGAGACGGCGTCGTGGGGCTTGACAACTTCAACAGCTACTACGACCCGTCGTTGAAGAAGGCCCGAAGGAACCTCCTCAAATCCCACGGCATCTTCATCGTCGAGGGAGATATAAACGACAACAAACTCCTCGACAAGCTCTTCGACACCGTGGCCTTCACCCACGTCATGCACCTGGCCGCTCAGGCCGGAGTCCGGTACGCCATGGAGAACCCCGGCTCTTATGTCCACAGCAACATCGCCGGCCTCGTCACGCTTCTCGAGGTATGTAAATCGGCCAACCCTCAGCCGTCGATTGTGTGGGCCTCCTCCAGCTCAGTCTACGGCTTAAACGACAAGGTCCCGTTCTCGGAATCCGACCGGACCGACCAGCCGGCGAGCCTCTACGCCGCGACGAAGAAGGCCGGCGAGGAAATCACCCACACTTACAACCACATTTACGGGCTGTCGGTCACCGGGTTGAGATTCTTCACGGTTTACGGACCCTGGGGCAGACCCGACATGGCGTATTTCAGTTTTACCCGCAACATCCTTCAGGGTAAACCCATCACGATTTACCGCGGGAAGAACCACGTGGACTTGGCCAGGGATTTCACGTACATTGACGACATTGTCAAGGGTTGTTTGGGGTCTTTGGATACCTCCGGGAAGAGTACCGGGTCGGGCGGGAAGAAGCGGGGACCCGCACCGTACCGGATCTTTAATTTGGGGAACACGTCACCGGTGACGGTACCCACACTGGTGAACATCTTGGAGCGGCATTTGAAGATGAAGGCGAAGAGGAATGTAGTGGAGATGCTCGGAAACGGCGACGTTCCGTTCACGCACGCGAACATAAGCTTGGCCCGAAGACAAATCGGGTATAAGCCGACGACCGATTTGCAAACCGGATTGAAGAAGTTTGTTAGATGGTACCTTTCTTATTACGGTTACAATAACGGCAAACCTGTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000217 GO:0000400 GO:0000902 GO:0000904 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042995 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

434

Amino Acids

48.15

Weight (kDa)

9.65

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	94 - 277	4.3e-14	RmlD substrate binding domain
Epimerase	PF01370	96 - 330	8.2e-52	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	96 - 301	3.7e-09	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	97 - 416	1.4e-47	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	97 - 320	1.6e-13	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04880
fragaria_vesca	FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370
malus_domestica	MD04G1008800.v1.1
prunus_persica	Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1
pyrus_communis	pycom04g00660
rosa_chinensis	RchiOBHm_Chr4g0415261
rosa_laevigata	RLG00000008083
rosa_multiflora	Rmu_sc0003551.1_g000023
rosa_roxburghii	Rroxscaffold_5G00359070
rosa_rugosa	Rorug04G0132600 Rorug04G0132700 Rorug04G0132800
rosa_samantha	Rh4AG193400 Rh4BG192000 Rh4CG204500 Rh4DG191300
rosa_wichuraiana	Rw4G016460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	959
Acc36I	ACCTGC	1 cut(s)	232
Acc65I	GGTACC	2 cut(s)	1078, 1260
AccB1I	GGYRCC	3 cut(s)	317, 1078, 1260
AccBSI	CCGCTC	4 cut(s)	67, 270, 530, 1105
AccI	GTMKAC	3 cut(s)	41, 186, 669
AccII	CGCG	5 cut(s)	257, 348, 740, 909, 1178
AclWI	GGATC	2 cut(s)	256, 1052
AcoI	YGGCCR	4 cut(s)	303, 525, 624, 930
AcuI	CTGAAG	1 cut(s)	866
AcvI	CACGTG	2 cut(s)	325, 922
AcyI	GRCGYC	3 cut(s)	44, 158, 357
AfaI	GTAC	7 cut(s)	203, 548, 947, 1003, 1040, 1080, 1262
AfiI	CCNNNNNNNGG	3 cut(s)	198, 543, 697
AflIII	ACRYGT	2 cut(s)	324, 1062
AgeI	ACCGGT	1 cut(s)	1069
AgsI	TTSAA	5 cut(s)	58, 379, 403, 1114, 1243
AjiI	CACGTC	2 cut(s)	514, 1065
AjnI	CCWGG	4 cut(s)	215, 522, 833, 932
AjuI	GAANNNNNNNTTGG	2 cut(s)	1172, 1204
AleI	CACNNNNGTG	2 cut(s)	323, 1088
AluBI	AGCT	6 cut(s)	31, 180, 384, 487, 663, 1188
AluI	AGCT	6 cut(s)	31, 180, 384, 487, 663, 1188
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	2 cut(s)	12, 345
AlwI	GGATC	2 cut(s)	256, 1052
Ama87I	CYCGRG	1 cut(s)	608
ApaI	GGGCCC	2 cut(s)	73, 136
ApeKI	GCWGC	2 cut(s)	99, 195
ArsI	GACNNNNNNTTYG	4 cut(s)	473, 505, 1210, 1242
AsiGI	ACCGGT	1 cut(s)	1069
Asp718I	GGTACC	2 cut(s)	1078, 1260
AspLEI	GCGC	2 cut(s)	259, 348
AsuC2I	CCSGG	6 cut(s)	48, 298, 564, 805, 994, 1006
AsuHPI	GGTGA	6 cut(s)	499, 757, 793, 1059, 1084, 1102
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	5 cut(s)	244, 688, 711, 830, 1028
BaeGI	GKGCMC	2 cut(s)	73, 136
BalI	TGGCCA	1 cut(s)	932
BanI	GGYRCC	3 cut(s)	317, 1078, 1260
BanII	GRGCYC	3 cut(s)	33, 73, 136
BbrPI	CACGTG	2 cut(s)	325, 922
BbsI	GAAGAC	2 cut(s)	30, 1204
Bbv12I	GWGCWC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	86, 207
BccI	CCATC	2 cut(s)	902, 1251
BceAI	ACGGC	7 cut(s)	171, 370, 451, 622, 688, 1171, 1303
BcgI	CGANNNNNNTGC	4 cut(s)	427, 461, 1210, 1244
BciT130I	CCWGG	4 cut(s)	217, 524, 835, 934
BciVI	GTATCC	1 cut(s)	979
BcnI	CCSGG	6 cut(s)	48, 298, 564, 805, 994, 1006
BcoDI	GTCTC	2 cut(s)	12, 345
BfaI	CTAG	1 cut(s)	1303
BfuAI	ACCTGC	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	979
BglI	GCCNNNNNGGC	2 cut(s)	155, 533
BisI	GCNGC	7 cut(s)	100, 196, 277, 303, 528, 738, 1106
BlsI	GCNGC	7 cut(s)	101, 197, 278, 304, 529, 739, 1107
Bme18I	GGWCC	5 cut(s)	244, 688, 711, 830, 1028
BmeT110I	CYCGRG	1 cut(s)	608
BmgBI	CACGTC	2 cut(s)	514, 1065
BmsI	GCATC	2 cut(s)	447, 1134
BpiI	GAAGAC	2 cut(s)	30, 1204
BpmI	CTGGAG	1 cut(s)	643
Bpu10I	CCTNAGC	2 cut(s)	531, 633
BpuMI	CCSGG	6 cut(s)	48, 298, 564, 805, 994, 1006
BsaAI	YACGTR	3 cut(s)	325, 922, 945
BsaHI	GRCGYC	3 cut(s)	44, 158, 357
BsaWI	WCCGGW	5 cut(s)	543, 708, 1041, 1069, 1235
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 543, 697
Bse118I	RCCGGY	6 cut(s)	198, 305, 590, 721, 752, 1069
Bse1I	ACTGG	3 cut(s)	88, 229, 1092
BseBI	CCWGG	4 cut(s)	217, 524, 835, 934
BseGI	GGATG	1 cut(s)	876
BseLI	CCNNNNNNNGG	3 cut(s)	198, 543, 697
BseMII	CTCAG	3 cut(s)	545, 647, 678
BseNI	ACTGG	3 cut(s)	88, 229, 1092
BseRI	GAGGAG	3 cut(s)	413, 467, 646
BseSI	GKGCMC	2 cut(s)	73, 136
BseX3I	CGGCCG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	86, 207
Bsh1236I	CGCG	5 cut(s)	257, 348, 740, 909, 1178
Bsh1285I	CGRYCG	3 cut(s)	306, 709, 1224
BshNI	GGYRCC	3 cut(s)	317, 1078, 1260
BshTI	ACCGGT	1 cut(s)	1069
BsiEI	CGRYCG	3 cut(s)	306, 709, 1224
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	608
BslFI	GGGAC	2 cut(s)	674, 1041
BslI	CCNNNNNNNGG	3 cut(s)	198, 543, 697
BsmAI	GTCTC	2 cut(s)	12, 345
BsmBI	CGTCTC	2 cut(s)	12, 345
BsmFI	GGGAC	2 cut(s)	674, 1041
BsoBI	CYCGRG	1 cut(s)	608
Bsp120I	GGGCCC	2 cut(s)	69, 132
Bsp1286I	GDGCHC	3 cut(s)	33, 73, 136
Bsp143I	GATC	4 cut(s)	60, 144, 261, 1044
Bsp19I	CCATGG	2 cut(s)	330, 552
BspCNI	CTCAG	3 cut(s)	544, 646, 677
BspFNI	CGCG	5 cut(s)	257, 348, 740, 909, 1178
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	2 cut(s)	256, 1052
BspQI	GCTCTTC	2 cut(s)	38, 494
BspT107I	GGYRCC	3 cut(s)	317, 1078, 1260
BsrBI	CCGCTC	4 cut(s)	67, 270, 530, 1105
BsrFI	RCCGGY	6 cut(s)	198, 305, 590, 721, 752, 1069
BsrI	ACTGG	3 cut(s)	88, 229, 1092
BssAI	RCCGGY	6 cut(s)	198, 305, 590, 721, 752, 1069
BssMI	GATC	4 cut(s)	60, 144, 261, 1044
BssNI	GRCGYC	3 cut(s)	44, 158, 357
BssT1I	CCWWGG	2 cut(s)	330, 552
Bst2UI	CCWGG	4 cut(s)	217, 524, 835, 934
Bst4CI	ACNGT	5 cut(s)	499, 823, 1038, 1078, 1277
Bst6I	CTCTTC	5 cut(s)	38, 143, 494, 992, 1121
BstACI	GRCGYC	3 cut(s)	44, 158, 357
BstBAI	YACGTR	3 cut(s)	325, 922, 945
BstC8I	GCNNGC	6 cut(s)	69, 592, 723, 727, 754, 1176
BstDEI	CTNAG	3 cut(s)	531, 633, 664
BstDSI	CCRYGG	5 cut(s)	330, 433, 498, 552, 907
BstEII	GGTNACC	2 cut(s)	292, 799
BstF5I	GGATG	1 cut(s)	876
BstFNI	CGCG	5 cut(s)	257, 348, 740, 909, 1178
BstHHI	GCGC	2 cut(s)	259, 348
BstKTI	GATC	4 cut(s)	63, 147, 264, 1047
BstMAI	GTCTC	2 cut(s)	12, 345
BstMBI	GATC	4 cut(s)	60, 144, 261, 1044
BstMCI	CGRYCG	3 cut(s)	306, 709, 1224
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 276, 354, 533
BstNI	CCWGG	4 cut(s)	217, 524, 835, 934
BstNSI	RCATGY	1 cut(s)	283
BstPI	GGTNACC	2 cut(s)	292, 799
BstSLI	GKGCMC	2 cut(s)	73, 136
BstUI	CGCG	5 cut(s)	257, 348, 740, 909, 1178
BstV1I	GCAGC	2 cut(s)	86, 207
BstV2I	GAAGAC	2 cut(s)	30, 1204
BstX2I	RGATCY	2 cut(s)	261, 1044
BstYI	RGATCY	2 cut(s)	261, 1044
BstZI	CGGCCG	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	979
BtgI	CCRYGG	5 cut(s)	330, 433, 498, 552, 907
BtgZI	GCGATG	1 cut(s)	571
BtrI	CACGTC	2 cut(s)	514, 1065
BtsCI	GGATG	1 cut(s)	876
BtsIMutI	CAGTG	2 cut(s)	236, 1085
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	6 cut(s)	69, 592, 723, 727, 754, 1176
CfoI	GCGC	2 cut(s)	259, 348
Cfr10I	RCCGGY	6 cut(s)	198, 305, 590, 721, 752, 1069
Cfr42I	CCGCGG	1 cut(s)	910
CpoI	CGGWCCG	1 cut(s)	711
CseI	GACGC	3 cut(s)	52, 147, 346
Csp6I	GTAC	7 cut(s)	202, 547, 946, 1002, 1039, 1079, 1261
CspAI	ACCGGT	1 cut(s)	1069
CspI	CGGWCCG	1 cut(s)	711
CviAII	CATG	7 cut(s)	79, 121, 280, 331, 517, 553, 850
CviQI	GTAC	7 cut(s)	202, 547, 946, 1002, 1039, 1079, 1261
DdeI	CTNAG	3 cut(s)	531, 633, 664
DpnI	GATC	4 cut(s)	62, 146, 263, 1046
DpnII	GATC	4 cut(s)	60, 144, 261, 1044
DrdI	GACNNNNNNGTC	1 cut(s)	959
DseDI	GACNNNNNNGTC	1 cut(s)	959
EaeI	YGGCCR	4 cut(s)	303, 525, 624, 930
EagI	CGGCCG	1 cut(s)	303
Eam1104I	CTCTTC	5 cut(s)	38, 143, 494, 992, 1121
EarI	CTCTTC	5 cut(s)	38, 143, 494, 992, 1121
Ecl136II	GAGCTC	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	330, 552
Eco24I	GRGCYC	3 cut(s)	33, 73, 136
Eco47I	GGWCC	5 cut(s)	244, 688, 711, 830, 1028
Eco52I	CGGCCG	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	866
Eco72I	CACGTG	2 cut(s)	325, 922
Eco88I	CYCGRG	1 cut(s)	608
Eco91I	GGTNACC	2 cut(s)	292, 799
EcoICRI	GAGCTC	1 cut(s)	31
EcoO109I	RGGNCCY	3 cut(s)	133, 688, 1028
EcoO65I	GGTNACC	2 cut(s)	292, 799
EcoRII	CCWGG	4 cut(s)	215, 522, 833, 932
EcoT14I	CCWWGG	2 cut(s)	330, 552
EcoT38I	GRGCYC	3 cut(s)	33, 73, 136
ErhI	CCWWGG	2 cut(s)	330, 552
Esp3I	CGTCTC	2 cut(s)	12, 345
FaeI	CATG	7 cut(s)	82, 124, 283, 334, 520, 556, 853
FaqI	GGGAC	2 cut(s)	674, 1041
FatI	CATG	7 cut(s)	78, 120, 279, 330, 516, 552, 849
FauI	CCCGC	6 cut(s)	60, 878, 902, 1007, 1017, 1039
FblI	GTMKAC	3 cut(s)	41, 186, 669
Fnu4HI	GCNGC	7 cut(s)	100, 196, 277, 303, 528, 738, 1106
FokI	GGATG	1 cut(s)	863
FriOI	GRGCYC	3 cut(s)	33, 73, 136
Fsp4HI	GCNGC	7 cut(s)	100, 196, 277, 303, 528, 738, 1106
FspBI	CTAG	1 cut(s)	1303
GlaI	GCGC	2 cut(s)	258, 347
GluI	GCNGC	7 cut(s)	100, 196, 277, 303, 528, 738, 1106
GsuI	CTGGAG	1 cut(s)	643
HgaI	GACGC	3 cut(s)	52, 147, 346
HhaI	GCGC	2 cut(s)	259, 348
Hin1I	GRCGYC	3 cut(s)	44, 158, 357
Hin1II	CATG	7 cut(s)	82, 124, 283, 334, 520, 556, 853
Hin6I	GCGC	2 cut(s)	257, 346
HinP1I	GCGC	2 cut(s)	257, 346
HincII	GTYRAC	2 cut(s)	42, 187
HindII	GTYRAC	2 cut(s)	42, 187
HindIII	AAGCTT	1 cut(s)	1186
HinfI	GANTC	5 cut(s)	188, 225, 540, 701, 813
HphI	GGTGA	6 cut(s)	499, 757, 793, 1059, 1084, 1102
Hpy188I	TCNGA	3 cut(s)	700, 706, 1151
Hpy188III	TCNNGA	5 cut(s)	58, 142, 175, 608, 898
HpyAV	CCTTC	6 cut(s)	400, 408, 514, 742, 890, 1114
HpyCH4III	ACNGT	5 cut(s)	499, 823, 1038, 1078, 1277
HpyCH4IV	ACGT	6 cut(s)	324, 513, 921, 944, 1064, 1161
HpyCH4V	TGCA	2 cut(s)	520, 1231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 276, 354, 533
HpyF3I	CTNAG	3 cut(s)	531, 633, 664
HpySE526I	ACGT	6 cut(s)	324, 513, 921, 944, 1064, 1161
Hsp92I	GRCGYC	3 cut(s)	44, 158, 357
Hsp92II	CATG	7 cut(s)	82, 124, 283, 334, 520, 556, 853
HspAI	GCGC	2 cut(s)	257, 346
KflI	GGGWCCC	1 cut(s)	1028
KpnI	GGTACC	2 cut(s)	1082, 1264
KroI	GCCGGC	3 cut(s)	590, 721, 752
KroNI	GCCGGC	3 cut(s)	592, 723, 754
KspI	CCGCGG	1 cut(s)	910
Kzo9I	GATC	4 cut(s)	60, 144, 261, 1044
LguI	GCTCTTC	2 cut(s)	38, 494
LmnI	GCTCC	2 cut(s)	275, 1102
Lsp1109I	GCAGC	2 cut(s)	86, 207
LweI	GCATC	2 cut(s)	447, 1134
MaeI	CTAG	1 cut(s)	1303
MaeII	ACGT	6 cut(s)	324, 513, 921, 944, 1064, 1161
MaeIII	GTNAC	6 cut(s)	292, 598, 799, 1065, 1072, 1277
MalI	GATC	4 cut(s)	62, 146, 263, 1046
MbiI	CCGCTC	4 cut(s)	67, 270, 530, 1105
MboI	GATC	4 cut(s)	60, 144, 261, 1044
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	2 cut(s)	261, 1044
MhlI	GDGCHC	3 cut(s)	33, 73, 136
MlsI	TGGCCA	1 cut(s)	932
MluCI	AATT	2 cut(s)	17, 1051
MluNI	TGGCCA	1 cut(s)	932
MlyI	GAGTC	2 cut(s)	182, 549
MmeI	TCCRAC	1 cut(s)	729
Mox20I	TGGCCA	1 cut(s)	932
MroNI	GCCGGC	3 cut(s)	590, 721, 752
MscI	TGGCCA	1 cut(s)	932
MseI	TTAA	2 cut(s)	677, 1050
MslI	CAYNNNNRTG	2 cut(s)	323, 1088
Msp20I	TGGCCA	1 cut(s)	932
MspA1I	CMGCKG	2 cut(s)	99, 909
MunI	CAATTG	1 cut(s)	17
MvaI	CCWGG	4 cut(s)	217, 524, 835, 934
MvnI	CGCG	5 cut(s)	257, 348, 740, 909, 1178
MwoI	GCNNNNNNNGC	4 cut(s)	155, 276, 354, 533
NaeI	GCCGGC	3 cut(s)	592, 723, 754
NciI	CCSGG	6 cut(s)	48, 298, 564, 805, 994, 1006
NcoI	CCATGG	2 cut(s)	330, 552
NdeII	GATC	4 cut(s)	60, 144, 261, 1044
NgoMIV	GCCGGC	3 cut(s)	590, 721, 752
NlaIII	CATG	7 cut(s)	82, 124, 283, 334, 520, 556, 853
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	4 cut(s)	598, 799, 1065, 1072
NspI	RCATGY	1 cut(s)	283
OliI	CACNNNNGTG	2 cut(s)	323, 1088
PaeR7I	CTCGAG	1 cut(s)	608
PasI	CCCWGGG	1 cut(s)	834
PciSI	GCTCTTC	2 cut(s)	38, 494
PcsI	WCGNNNNNNNCGW	4 cut(s)	321, 594, 678, 1155
PdiI	GCCGGC	3 cut(s)	592, 723, 754
PfeI	GAWTC	3 cut(s)	225, 701, 813
PflFI	GACNNNGTC	3 cut(s)	356, 686, 959
PfoI	TCCNGGA	1 cut(s)	992
PinAI	ACCGGT	1 cut(s)	1069
PkrI	GCNGC	7 cut(s)	101, 197, 278, 304, 529, 739, 1107
PleI	GAGTC	2 cut(s)	182, 548
PmaCI	CACGTG	2 cut(s)	325, 922
PmlI	CACGTG	2 cut(s)	325, 922
PpsI	GAGTC	2 cut(s)	182, 548
Ppu21I	YACGTR	3 cut(s)	325, 922, 945
PpuMI	RGGWCCY	2 cut(s)	688, 1028
Psp124BI	GAGCTC	1 cut(s)	33
Psp5II	RGGWCCY	2 cut(s)	688, 1028
Psp6I	CCWGG	4 cut(s)	215, 522, 833, 932
PspCI	CACGTG	2 cut(s)	325, 922
PspEI	GGTNACC	2 cut(s)	292, 799
PspGI	CCWGG	4 cut(s)	215, 522, 833, 932
PspOMI	GGGCCC	2 cut(s)	69, 132
PspPPI	RGGWCCY	2 cut(s)	688, 1028
PsuI	RGATCY	2 cut(s)	261, 1044
PsyI	GACNNNGTC	3 cut(s)	356, 686, 959
RsaI	GTAC	7 cut(s)	203, 548, 947, 1003, 1040, 1080, 1262
RsaNI	GTAC	7 cut(s)	202, 547, 946, 1002, 1039, 1079, 1261
RseI	CAYNNNNRTG	2 cut(s)	323, 1088
Rsr2I	CGGWCCG	1 cut(s)	711
RsrII	CGGWCCG	1 cut(s)	711
SacI	GAGCTC	1 cut(s)	33
SacII	CCGCGG	1 cut(s)	910
SalI	GTCGAC	2 cut(s)	40, 185
SapI	GCTCTTC	2 cut(s)	38, 494
SaqAI	TTAA	2 cut(s)	677, 1050
SatI	GCNGC	7 cut(s)	100, 196, 277, 303, 528, 738, 1106
Sau3AI	GATC	4 cut(s)	60, 144, 261, 1044
SchI	GAGTC	2 cut(s)	182, 549
SduI	GDGCHC	3 cut(s)	33, 73, 136
SfaNI	GCATC	2 cut(s)	447, 1134
SfiI	GGCCNNNNNGGCC	1 cut(s)	533
Sfr274I	CTCGAG	1 cut(s)	608
Sfr303I	CCGCGG	1 cut(s)	910
SgrAI	CRCCGGYG	1 cut(s)	1069
SgrBI	CCGCGG	1 cut(s)	910
SgrDI	CGTCGACG	1 cut(s)	40
SinI	GGWCC	5 cut(s)	244, 688, 711, 830, 1028
SlaI	CTCGAG	1 cut(s)	608
SmiMI	CAYNNNNRTG	2 cut(s)	323, 1088
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	2 cut(s)	17, 1051
SspMI	CTAG	1 cut(s)	1303
SstI	GAGCTC	1 cut(s)	33
StyI	CCWWGG	2 cut(s)	330, 552
TaaI	ACNGT	5 cut(s)	499, 823, 1038, 1078, 1277
TaiI	ACGT	6 cut(s)	327, 516, 924, 947, 1067, 1164
TaqI	TCGA	8 cut(s)	41, 63, 186, 450, 480, 492, 609, 641
TaqII	GACCGA	3 cut(s)	728, 787, 1238
TasI	AATT	2 cut(s)	17, 1051
TauI	GCSGC	5 cut(s)	279, 305, 530, 740, 1108
TfiI	GAWTC	3 cut(s)	225, 701, 813
Tru1I	TTAA	2 cut(s)	677, 1050
Tru9I	TTAA	2 cut(s)	677, 1050
TscAI	CASTG	2 cut(s)	236, 1092
TseFI	GTSAC	4 cut(s)	598, 799, 1065, 1072
TseI	GCWGC	2 cut(s)	99, 195
Tsp45I	GTSAC	4 cut(s)	598, 799, 1065, 1072
TspDTI	ATGAA	3 cut(s)	95, 433, 1133
TspGWI	ACGGA	3 cut(s)	274, 843, 1155
TspRI	CASTG	2 cut(s)	236, 1092
Tth111I	GACNNNGTC	3 cut(s)	356, 686, 959
VpaK11BI	GGWCC	5 cut(s)	244, 688, 711, 830, 1028
XceI	RCATGY	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	608
XmiI	GTMKAC	3 cut(s)	41, 186, 669
XspI	CTAG	1 cut(s)	1303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.