Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007195

Physical Location & Seq

Genomic Coordinates Reverse (-)

20351507 .. 20357523

Gene Structure 6017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16370.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCAGCATCAACTTCTTGTGCCAGTAAGAGCCCATTACCCATGAAAGATACAACCTCTAACTTCATTCCATACCCAGCACCTCTTGCTAAATATGAGGAGGTTGCAGCCAATCCTAAGCTGTTCATATCTACTTTGGAAAAGCTCCATGCTTCAATGGGAACCAAGTTCATGATCCCCATAATAGGAGGAAGAGAGTTAGACTTGCATCGACTGTTTGTGGAGGTAACTGCTCGTGGTGGTATGGCAAAGATTGTTAAAGATAGAAGATGGAAGGAAGTTACCGCTGTATTCAACTTCCCCTCCACAGCTACAAATGCTTCTTTTGTCCTGCGGAAATATTATAATTCATTGCTTCTCCACTATGAACAAATATACTATTTCAAAGCTCAAGCATGGAATCCTCTCTCTTCTGATATATCACAAAACCCTAATATGACACCTGGTCCAGCTCCAAGGGGAGGAACCAAACGAAAATCAACTGAAGCTCAGACACCTGTGCTTCAGCAACCACATATAATTCCAGAGATTCCTGGAGCCGGGACACCAGCACTGCCAGATGATGATACTGTGTTTGGGTTCATAGATGGAAAATTTGAAAGTGGATATCTTGTTACAGTCACCAAAGGCACAAAGAAGTTACGAGGTGTACTGTATCAAATTCCACAGAACCCAGCACAGGAGGCTCCACAAGGTGCACATAATTGTAACATGGTGGTCAGCAAAAACGACAGTGCTTCAGCTGTCGCTGTTCCCCATCGTCGCCGCCGTAGGAAGAAATCCGAAATAAAAAGGAGGGATCCTGATCACCCAAAACCAAACAGAAGTGGGTATAACTTTTTCTTTGCTGAACAGCATGCAAGGCTGAAGCCACTTCATCCAGGGAAGGATAGAGAGATAAGTAGAATGATTGGTGAACTCTGGAACAAATTGAAAGACTCTGATAAAGGAGAGTATCAGGAGAAAGCTGTGAAAGATAAGGAAAGGTACCGAGTAGAAATGGAGGCATACCGGGAGAGGTTGAAGGCTGCTCAAGTCGTCAGCGATGCAGTCCCACTACAGCAGCGGTATCCTGAAGCAGATGCAAGTCTGGCAGAATCAGAAACAAAGTTTGAAGAAACTGAGACTGGCGACTCTCCAGAAACTGCAGATGAAAGTAGTGAGAGTAGTTCTAGCATATCAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000217 GO:0000400 GO:0000902 GO:0000904 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042995 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

397

Amino Acids

44.35

Weight (kDa)

9.15

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	39 - 123	1.5e-21	ARID/BRIGHT DNA binding domain
HMG_box_2	PF09011	269 - 338	5.5e-11	HMG-box domain
HMG_box	PF00505	272 - 339	2.2e-15	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04880
fragaria_vesca	FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370
malus_domestica	MD04G1008800.v1.1
prunus_persica	Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1
pyrus_communis	pycom04g00660
rosa_chinensis	RchiOBHm_Chr4g0415261
rosa_laevigata	RLG00000008083
rosa_multiflora	Rmu_sc0003551.1_g000023
rosa_roxburghii	Rroxscaffold_5G00359070
rosa_rugosa	Rorug04G0132600 Rorug04G0132700 Rorug04G0132800
rosa_samantha	Rh4AG193400 Rh4BG192000 Rh4CG204500 Rh4DG191300
rosa_wichuraiana	Rw4G016460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc65I	GGTACC	1 cut(s)	987
AccB1I	GGYRCC	1 cut(s)	987
AciI	CCGC	4 cut(s)	285, 334, 766, 1066
AclWI	GGATC	3 cut(s)	169, 794, 807
AcsI	RAATTY	2 cut(s)	593, 660
AcuI	CTGAAG	5 cut(s)	488, 504, 723, 887, 1095
AdeI	CACNNNGTG	1 cut(s)	695
AfaI	GTAC	2 cut(s)	651, 989
AfiI	CCNNNNNNNGG	4 cut(s)	185, 461, 539, 679
AgsI	TTSAA	7 cut(s)	156, 295, 385, 599, 934, 1024, 1115
AhdI	GACNNNNNGTC	1 cut(s)	444
AjnI	CCWGG	3 cut(s)	442, 532, 880
AluBI	AGCT	8 cut(s)	121, 145, 311, 389, 452, 488, 743, 968
AluI	AGCT	8 cut(s)	121, 145, 311, 389, 452, 488, 743, 968
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	1 cut(s)	1118
Alw44I	GTGCAC	1 cut(s)	696
AlwI	GGATC	3 cut(s)	169, 794, 807
AlwNI	CAGNNNCTG	1 cut(s)	1145
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	4 cut(s)	5, 107, 1028, 1063
ApoI	RAATTY	2 cut(s)	593, 660
Asp718I	GGTACC	1 cut(s)	987
AspS9I	GGNCC	1 cut(s)	446
AsuC2I	CCSGG	2 cut(s)	541, 1013
AsuHPI	GGTGA	3 cut(s)	613, 800, 926
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	700
BamHI	GGATCC	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	987
BanII	GRGCYC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	4 cut(s)	17, 119, 1015, 1075
BccI	CCATC	3 cut(s)	264, 581, 765
BceAI	ACGGC	1 cut(s)	753
BciT130I	CCWGG	3 cut(s)	444, 534, 882
BciVI	GTATCC	1 cut(s)	1080
BclI	TGATCA	1 cut(s)	805
BcnI	CCSGG	2 cut(s)	541, 1013
BcoDI	GTCTC	1 cut(s)	1118
BfaI	CTAG	1 cut(s)	1173
BfmI	CTRYAG	2 cut(s)	1058, 1146
BfuI	GTATCC	1 cut(s)	1080
BisI	GCNGC	5 cut(s)	6, 108, 766, 1029, 1064
BlsI	GCNGC	5 cut(s)	7, 109, 767, 1030, 1065
Bme1390I	CCNGG	5 cut(s)	444, 534, 541, 882, 1013
Bme18I	GGWCC	1 cut(s)	446
BmeRI	GACNNNNNGTC	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	6 cut(s)	163, 466, 538, 687, 801, 989
BmrFI	CCNGG	5 cut(s)	444, 534, 541, 882, 1013
BmsI	GCATC	4 cut(s)	17, 217, 1036, 1072
BpmI	CTGGAG	2 cut(s)	555, 1122
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	375, 1017
BpuMI	CCSGG	2 cut(s)	541, 1013
BsaBI	GATNNNNATC	1 cut(s)	804
BsaJI	CCNNGG	2 cut(s)	455, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 461, 539, 679
Bse1I	ACTGG	2 cut(s)	24, 1132
Bse3DI	GCAATG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	3 cut(s)	444, 534, 882
BseDI	CCNNGG	2 cut(s)	455, 881
BseGI	GGATG	1 cut(s)	877
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	4 cut(s)	185, 461, 539, 679
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	2 cut(s)	503, 1113
BseNI	ACTGG	2 cut(s)	24, 1132
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	4 cut(s)	17, 119, 1015, 1075
BseYI	CCCAGC	2 cut(s)	76, 673
BshNI	GGYRCC	1 cut(s)	987
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	2 cut(s)	540, 1012
BslFI	GGGAC	2 cut(s)	556, 1037
BslI	CCNNNNNNNGG	4 cut(s)	185, 461, 539, 679
BsmAI	GTCTC	1 cut(s)	1118
BsmFI	GGGAC	2 cut(s)	556, 1037
Bsp1286I	GDGCHC	2 cut(s)	35, 700
Bsp143I	GATC	3 cut(s)	174, 799, 805
BspACI	CCGC	4 cut(s)	285, 334, 766, 1066
BspCNI	CTCAG	2 cut(s)	502, 1114
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	6 cut(s)	163, 466, 538, 687, 801, 989
BspMAI	CTGCAG	1 cut(s)	1150
BspPI	GGATC	3 cut(s)	169, 794, 807
BspT107I	GGYRCC	1 cut(s)	987
BsrDI	GCAATG	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	24, 1132
BssECI	CCNNGG	2 cut(s)	455, 881
BssMI	GATC	3 cut(s)	174, 799, 805
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	3 cut(s)	444, 534, 882
Bst4CI	ACNGT	5 cut(s)	216, 571, 619, 654, 734
Bst6I	CTCTTC	2 cut(s)	187, 415
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	858
BstDEI	CTNAG	3 cut(s)	117, 489, 1122
BstF5I	GGATG	1 cut(s)	877
BstKTI	GATC	3 cut(s)	177, 802, 808
BstMAI	GTCTC	1 cut(s)	1118
BstMBI	GATC	3 cut(s)	174, 799, 805
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 317, 683, 862, 1091
BstNI	CCWGG	3 cut(s)	444, 534, 882
BstNSI	RCATGY	1 cut(s)	860
BstSCI	CCNGG	5 cut(s)	442, 532, 539, 880, 1011
BstSFI	CTRYAG	2 cut(s)	1058, 1146
BstSLI	GKGCMC	1 cut(s)	700
BstV1I	GCAGC	4 cut(s)	17, 119, 1015, 1075
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
BsuI	GTATCC	1 cut(s)	1080
BtgZI	GCGATG	1 cut(s)	1059
BtsCI	GGATG	1 cut(s)	877
BtsI	GCAGTG	1 cut(s)	551
BtsIMutI	CAGTG	2 cut(s)	551, 739
Cac8I	GCNNGC	1 cut(s)	858
CaiI	CAGNNNCTG	1 cut(s)	1145
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	446
CsiI	ACCWGGT	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	650, 988
CviAII	CATG	6 cut(s)	43, 149, 172, 396, 712, 857
CviQI	GTAC	2 cut(s)	650, 988
DdeI	CTNAG	3 cut(s)	117, 489, 1122
DpnI	GATC	3 cut(s)	176, 801, 807
DpnII	GATC	3 cut(s)	174, 799, 805
DraIII	CACNNNGTG	1 cut(s)	695
DriI	GACNNNNNGTC	1 cut(s)	444
Eam1104I	CTCTTC	2 cut(s)	187, 415
Eam1105I	GACNNNNNGTC	1 cut(s)	444
EarI	CTCTTC	2 cut(s)	187, 415
Eco130I	CCWWGG	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	446
Eco57I	CTGAAG	5 cut(s)	488, 504, 723, 887, 1095
EcoRII	CCWGG	3 cut(s)	442, 532, 880
EcoRV	GATATC	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	6 cut(s)	46, 152, 175, 399, 715, 860
FaqI	GGGAC	2 cut(s)	556, 1037
FatI	CATG	6 cut(s)	42, 148, 171, 395, 711, 856
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	5 cut(s)	6, 108, 766, 1029, 1064
FokI	GGATG	1 cut(s)	864
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	5 cut(s)	6, 108, 766, 1029, 1064
FspBI	CTAG	1 cut(s)	1173
GluI	GCNGC	5 cut(s)	6, 108, 766, 1029, 1064
GsaI	CCCAGC	2 cut(s)	80, 677
GsuI	CTGGAG	2 cut(s)	555, 1122
HapII	CCGG	2 cut(s)	540, 1012
Hin1II	CATG	6 cut(s)	46, 152, 175, 399, 715, 860
HinfI	GANTC	5 cut(s)	400, 529, 938, 1097, 1133
HpaII	CCGG	2 cut(s)	540, 1012
HphI	GGTGA	3 cut(s)	613, 800, 926
Hpy166II	GTNNAC	3 cut(s)	650, 698, 917
Hpy188I	TCNGA	6 cut(s)	415, 492, 784, 943, 1102, 1183
Hpy188III	TCNNGA	7 cut(s)	172, 524, 803, 922, 959, 1073, 1139
Hpy8I	GTNNAC	3 cut(s)	650, 698, 917
Hpy99I	CGWCG	1 cut(s)	765
HpyAV	CCTTC	3 cut(s)	268, 880, 1018
HpyCH4III	ACNGT	5 cut(s)	216, 571, 619, 654, 734
HpyCH4V	TGCA	7 cut(s)	107, 208, 698, 860, 1049, 1085, 1148
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 317, 683, 862, 1091
HpyF3I	CTNAG	3 cut(s)	117, 489, 1122
Hsp92II	CATG	6 cut(s)	46, 152, 175, 399, 715, 860
KpnI	GGTACC	1 cut(s)	991
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	3 cut(s)	174, 799, 805
LmnI	GCTCC	4 cut(s)	150, 457, 536, 691
Lsp1109I	GCAGC	4 cut(s)	17, 119, 1015, 1075
LweI	GCATC	4 cut(s)	17, 217, 1036, 1072
MabI	ACCWGGT	1 cut(s)	442
MaeI	CTAG	1 cut(s)	1173
MaeIII	GTNAC	6 cut(s)	226, 280, 613, 619, 639, 707
MalI	GATC	3 cut(s)	176, 801, 807
MboI	GATC	3 cut(s)	174, 799, 805
MboII	GAAGA	5 cut(s)	204, 279, 402, 787, 1127
MflI	RGATCY	1 cut(s)	799
MhlI	GDGCHC	2 cut(s)	35, 700
MluCI	AATT	6 cut(s)	346, 519, 593, 660, 703, 929
MlyI	GAGTC	2 cut(s)	932, 1127
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	3 cut(s)	287, 743, 1066
MspI	CCGG	2 cut(s)	540, 1012
MspR9I	CCNGG	5 cut(s)	444, 534, 541, 882, 1013
MvaI	CCWGG	3 cut(s)	444, 534, 882
MwoI	GCNNNNNNNGC	5 cut(s)	86, 317, 683, 862, 1091
NciI	CCSGG	2 cut(s)	541, 1013
NdeII	GATC	3 cut(s)	174, 799, 805
NlaIII	CATG	6 cut(s)	46, 152, 175, 399, 715, 860
NlaIV	GGNNCC	6 cut(s)	163, 466, 538, 687, 801, 989
NmuCI	GTSAC	1 cut(s)	619
NspI	RCATGY	1 cut(s)	860
PaeI	GCATGC	1 cut(s)	860
PagI	TCATGA	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	766
PfeI	GAWTC	3 cut(s)	400, 529, 1097
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	5 cut(s)	7, 109, 767, 1030, 1065
PleI	GAGTC	2 cut(s)	932, 1127
PpsI	GAGTC	2 cut(s)	932, 1127
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	3 cut(s)	442, 532, 880
PspFI	CCCAGC	2 cut(s)	76, 673
PspGI	CCWGG	3 cut(s)	442, 532, 880
PspN4I	GGNNCC	6 cut(s)	163, 466, 538, 687, 801, 989
PspPI	GGNCC	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	1150
PstNI	CAGNNNCTG	1 cut(s)	1145
PsuI	RGATCY	1 cut(s)	799
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	2 cut(s)	651, 989
RsaNI	GTAC	2 cut(s)	650, 988
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	5 cut(s)	6, 108, 766, 1029, 1064
Sau3AI	GATC	3 cut(s)	174, 799, 805
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	2 cut(s)	932, 1127
ScrFI	CCNGG	5 cut(s)	444, 534, 541, 882, 1013
SduI	GDGCHC	2 cut(s)	35, 700
SexAI	ACCWGGT	1 cut(s)	442
SfaNI	GCATC	4 cut(s)	17, 217, 1036, 1072
SfcI	CTRYAG	2 cut(s)	1058, 1146
SinI	GGWCC	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	390, 1032
SmoI	CTYRAG	2 cut(s)	390, 1032
SphI	GCATGC	1 cut(s)	860
Sse9I	AATT	6 cut(s)	346, 519, 593, 660, 703, 929
SsiI	CCGC	4 cut(s)	285, 334, 766, 1066
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	1 cut(s)	1173
StyD4I	CCNGG	5 cut(s)	442, 532, 539, 880, 1011
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	5 cut(s)	216, 571, 619, 654, 734
TaqI	TCGA	1 cut(s)	211
TasI	AATT	6 cut(s)	346, 519, 593, 660, 703, 929
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	1 cut(s)	768
TfiI	GAWTC	3 cut(s)	400, 529, 1097
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	2 cut(s)	558, 739
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	4 cut(s)	5, 107, 1028, 1063
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	9 cut(s)	55, 59, 115, 160, 339, 381, 571, 866, 1167
TspRI	CASTG	2 cut(s)	558, 739
VneI	GTGCAC	1 cut(s)	696
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	2 cut(s)	593, 660
XceI	RCATGY	1 cut(s)	860
XspI	CTAG	1 cut(s)	1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.