Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007195

Physical Location & Seq

Genomic Coordinates Forward (+)

21349091 .. 21349468

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0132800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGTGAAGCTATCCAAAAATCGAAGCCAAAGCGCGAGAGCGATTCCGGGGATTCAAGCTCAGTTGCAAAGAAGCTGAAAATCGATCAAAGCCAAATCCCAGAAGTTGATTCGAGTGGAAGTGAGGCAAATTCAGATGCGAGGGAAATGGGTTTTGAAATCGAAGCTGAGGCAGCAGAGGATAAGGGGTTAAGGCACGCCATGGAGGACGCGTGGGTTCTGCTCTTGGATGCGAGCTTGGGTTTTCAGGGAAACTTGAGGTTCTTGATGCTTTTGGTTTTGTTTATTATGCTTAGTATTTGGTTTGGTATAGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000217 GO:0000400 GO:0000902 GO:0000904 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042995 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

106

Amino Acids

11.68

Weight (kDa)

4.59

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04880
fragaria_vesca	FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370
malus_domestica	MD04G1008800.v1.1
prunus_persica	Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1
pyrus_communis	pycom04g00660
rosa_chinensis	RchiOBHm_Chr4g0415261
rosa_laevigata	RLG00000008083
rosa_multiflora	Rmu_sc0003551.1_g000023
rosa_roxburghii	Rroxscaffold_5G00359070
rosa_rugosa	Rorug04G0132600 Rorug04G0132700 Rorug04G0132800
rosa_samantha	Rh4AG193400 Rh4BG192000 Rh4CG204500 Rh4DG191300
rosa_wichuraiana	Rw4G016460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	36, 212
AcsI	RAATTY	1 cut(s)	130
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	57, 158
AluBI	AGCT	5 cut(s)	11, 60, 76, 167, 237
AluI	AGCT	5 cut(s)	11, 60, 76, 167, 237
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	49
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	49
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	3 cut(s)	127, 220, 258
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	48, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	48, 201
BseGI	GGATG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	75, 159
BseXI	GCAGC	1 cut(s)	185
Bsh1236I	CGCG	2 cut(s)	36, 212
BshVI	ATCGAT	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	74, 160
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	2 cut(s)	36, 212
BssECI	CCNNGG	2 cut(s)	48, 201
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	198, 235
BstDEI	CTNAG	3 cut(s)	61, 168, 293
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	2 cut(s)	36, 212
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	47
BstUI	CGCG	2 cut(s)	36, 212
BstV1I	GCAGC	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	198, 235
CfoI	GCGC	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	84
CseI	GACGC	1 cut(s)	218
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	7 cut(s)	11, 28, 60, 76, 93, 167, 237
CviKI_1	RGCY	7 cut(s)	11, 28, 60, 76, 93, 167, 237
DdeI	CTNAG	3 cut(s)	61, 168, 293
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	205
FaiI	YATR	3 cut(s)	203, 290, 311
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	174
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	174
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	44, 53, 110
HpaII	CCGG	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	265
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	3 cut(s)	61, 168, 293
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	3 cut(s)	61, 114, 233
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	3 cut(s)	127, 220, 258
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MluCI	AATT	1 cut(s)	130
MluI	ACGCGT	1 cut(s)	210
MnlI	CCTC	6 cut(s)	118, 135, 163, 172, 199, 252
MseI	TTAA	1 cut(s)	191
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	49
MvnI	CGCG	2 cut(s)	36, 212
MwoI	GCNNNNNNNGC	1 cut(s)	173
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	44, 53, 110
PkrI	GCNGC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	49
SetI	ASST	6 cut(s)	13, 62, 78, 169, 239, 263
SfaNI	GCATC	3 cut(s)	127, 220, 258
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	4 cut(s)	23, 84, 113, 162
TasI	AATT	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	44, 53, 110
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseI	GCWGC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.