Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007195

Physical Location & Seq

Genomic Coordinates Reverse (-)

620226 .. 621079

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCCTGGAGCCAAGACAACAGCATCATCAGAAGATTCTGTGACAGGGGTTATTGATGGGAAATTCGAAAACGGATATCTTGTTACTGTCATCAGAGGCTCAACGAAGCTTAGAGGTGTACTTTATCAGTCTCCACGGAATCCAGCACAGGAAGTTCCACCAGTCCCACAGATCTTTGGCGCATTGGTTAACAGAAATGAGAGTGTTTCAGCTACACCTGGCATCCAGCAGCGTCGGCGCAGAAGAAAGAAGTCTGAGATAAAAAGGAGGGATCCTGCTCATCCGAAACCTAACAGAAGTGGCTACAACTTTTTCTTTGCGGAGCAGCATGCAAGGCTGAAACCACTCCATCCGGGGAAGGATAGAGAGATAAGTAGAATGATTGGTGAGCTCTGGAATAAATTGAAGGAGGCGGAAAAATCAGTGTATCAGGAGAAAGCCATCAAAGATAAAGAGCGATACAGAATAGAAATGGAGGATTACCGGGAGAGGTTGAAGACTGGTCTAGTGGTTAGTGATGCAGTGCCACTACAACAGCGGTTGCCTGAAGCAGATGCGAGCAACGTGGAATCAGATGCAAAGATTGAAGAAACTGAGGCCGGAGGCTCAGCACAAACTTCGGATGAGAGTAACGAGAGTAGTTCTAGCAAAACAGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000217 GO:0000400 GO:0000902 GO:0000904 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042995 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

221

Amino Acids

24.72

Weight (kDa)

9.39

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	92 - 161	2.2e-11	HMG-box domain
HMG_box	PF00505	95 - 162	1.4e-15	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04880
fragaria_vesca	FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370
malus_domestica	MD04G1008800.v1.1
prunus_persica	Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1
pyrus_communis	pycom04g00660
rosa_chinensis	RchiOBHm_Chr4g0415261
rosa_laevigata	RLG00000008083
rosa_multiflora	Rmu_sc0003551.1_g000023
rosa_roxburghii	Rroxscaffold_5G00359070
rosa_rugosa	Rorug04G0132600 Rorug04G0132700 Rorug04G0132800
rosa_samantha	Rh4AG193400 Rh4BG192000 Rh4CG204500 Rh4DG191300
rosa_wichuraiana	Rw4G016460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	320, 413, 538
AclWI	GGATC	2 cut(s)	266, 279
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	406, 496, 587
AjnI	CCWGG	2 cut(s)	4, 217
AluBI	AGCT	3 cut(s)	109, 212, 391
AluI	AGCT	3 cut(s)	109, 212, 391
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	2 cut(s)	266, 279
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	2 cut(s)	229, 325
ApoI	RAATTY	1 cut(s)	62
AspLEI	GCGC	2 cut(s)	182, 240
AsuC2I	CCSGG	2 cut(s)	354, 485
AsuHPI	GGTGA	1 cut(s)	398
AsuII	TTCGAA	1 cut(s)	66
BamHI	GGATCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	241, 337
BccI	CCATC	3 cut(s)	50, 357, 449
BcgI	CGANNNNNNTGC	2 cut(s)	600, 634
BciT130I	CCWGG	2 cut(s)	6, 219
BcnI	CCSGG	2 cut(s)	354, 485
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	2 cut(s)	506, 645
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	2 cut(s)	230, 326
BlpI	GCTNAGC	1 cut(s)	607
BlsI	GCNGC	2 cut(s)	231, 327
Bme1390I	CCNGG	4 cut(s)	6, 219, 354, 485
BmiI	GGNNCC	2 cut(s)	10, 273
BmrFI	CCNGG	4 cut(s)	6, 219, 354, 485
BmsI	GCATC	5 cut(s)	32, 231, 508, 544, 565
BpiI	GAAGAC	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	607
Bpu14I	TTCGAA	1 cut(s)	66
BpuMI	CCSGG	2 cut(s)	354, 485
BsaJI	CCNNGG	2 cut(s)	134, 353
Bse1I	ACTGG	2 cut(s)	161, 505
BseBI	CCWGG	2 cut(s)	6, 219
BseDI	CCNNGG	2 cut(s)	134, 353
BseGI	GGATG	4 cut(s)	222, 280, 349, 628
BseMII	CTCAG	3 cut(s)	246, 585, 621
BseNI	ACTGG	2 cut(s)	161, 505
BseXI	GCAGC	2 cut(s)	241, 337
BshFI	GGCC	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	3 cut(s)	353, 484, 600
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	599
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	171, 271
Bsp1720I	GCTNAGC	1 cut(s)	607
BspACI	CCGC	3 cut(s)	320, 413, 538
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	3 cut(s)	247, 586, 620
BspLI	GGNNCC	2 cut(s)	10, 273
BspPI	GGATC	2 cut(s)	266, 279
BspT104I	TTCGAA	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	161, 505
BssECI	CCNNGG	2 cut(s)	134, 353
BssMI	GATC	2 cut(s)	171, 271
Bst2UI	CCWGG	2 cut(s)	6, 219
Bst4CI	ACNGT	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	330, 559
BstDEI	CTNAG	4 cut(s)	110, 255, 594, 607
BstDSI	CCRYGG	1 cut(s)	134
BstF5I	GGATG	4 cut(s)	222, 280, 349, 628
BstHHI	GCGC	2 cut(s)	182, 240
BstKTI	GATC	2 cut(s)	174, 274
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	2 cut(s)	171, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 334
BstNI	CCWGG	2 cut(s)	6, 219
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	4 cut(s)	4, 217, 352, 483
BstV1I	GCAGC	2 cut(s)	241, 337
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	2 cut(s)	171, 271
BstYI	RGATCY	2 cut(s)	171, 271
BsuRI	GGCC	1 cut(s)	599
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	4 cut(s)	222, 280, 349, 628
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	429, 528
Cac8I	GCNNGC	2 cut(s)	330, 559
CfoI	GCGC	2 cut(s)	182, 240
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	1 cut(s)	329
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	4 cut(s)	110, 255, 594, 607
DpnI	GATC	2 cut(s)	173, 273
DpnII	GATC	2 cut(s)	171, 271
EciI	GGCGGA	1 cut(s)	428
Ecl136II	GAGCTC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	393
Eco32I	GATATC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	4, 217
EcoRV	GATATC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	1 cut(s)	332
FaiI	YATR	1 cut(s)	330
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	230, 326
FokI	GGATG	4 cut(s)	209, 267, 336, 635
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	2 cut(s)	230, 326
FspBI	CTAG	2 cut(s)	506, 645
GlaI	GCGC	2 cut(s)	181, 239
GluI	GCNGC	2 cut(s)	230, 326
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	3 cut(s)	353, 484, 600
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	2 cut(s)	182, 240
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	2 cut(s)	180, 238
HinP1I	GCGC	2 cut(s)	180, 238
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	3 cut(s)	35, 139, 569
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	3 cut(s)	353, 484, 600
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	119, 190
Hpy188I	TCNGA	6 cut(s)	31, 95, 256, 285, 574, 622
Hpy188III	TCNNGA	2 cut(s)	394, 431
Hpy8I	GTNNAC	2 cut(s)	119, 190
Hpy99I	CGWCG	1 cut(s)	237
HpyAV	CCTTC	2 cut(s)	352, 400
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	3 cut(s)	332, 521, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 334
HpyF3I	CTNAG	4 cut(s)	110, 255, 594, 607
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	2 cut(s)	180, 238
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	171, 271
LmnI	GCTCC	2 cut(s)	8, 322
Lsp1109I	GCAGC	2 cut(s)	241, 337
LweI	GCATC	5 cut(s)	32, 231, 508, 544, 565
MaeI	CTAG	2 cut(s)	506, 645
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	3 cut(s)	40, 82, 629
MalI	GATC	2 cut(s)	173, 273
MboI	GATC	2 cut(s)	171, 271
MboII	GAAGA	4 cut(s)	44, 255, 508, 599
MflI	RGATCY	2 cut(s)	171, 271
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	2 cut(s)	62, 401
MnlI	CCTC	8 cut(s)	89, 107, 261, 403, 469, 483, 589, 596
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	538
MspI	CCGG	3 cut(s)	353, 484, 600
MspR9I	CCNGG	4 cut(s)	6, 219, 354, 485
MvaI	CCWGG	2 cut(s)	6, 219
MwoI	GCNNNNNNNGC	2 cut(s)	235, 334
NciI	CCSGG	2 cut(s)	354, 485
NdeII	GATC	2 cut(s)	171, 271
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	2 cut(s)	10, 273
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	332
NspV	TTCGAA	1 cut(s)	66
PaeI	GCATGC	1 cut(s)	332
PfeI	GAWTC	3 cut(s)	35, 139, 569
PkrI	GCNGC	2 cut(s)	231, 327
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	4, 217
PspGI	CCWGG	2 cut(s)	4, 217
PspN4I	GGNNCC	2 cut(s)	10, 273
PsuI	RGATCY	2 cut(s)	171, 271
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	230, 326
Sau3AI	GATC	2 cut(s)	171, 271
ScrFI	CCNGG	4 cut(s)	6, 219, 354, 485
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	8 cut(s)	111, 118, 214, 220, 292, 393, 494, 567
SfaNI	GCATC	5 cut(s)	32, 231, 508, 544, 565
SfuI	TTCGAA	1 cut(s)	66
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	2 cut(s)	62, 401
SsiI	CCGC	3 cut(s)	320, 413, 538
SspMI	CTAG	2 cut(s)	506, 645
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	4 cut(s)	4, 217, 352, 483
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	62, 401
TatI	WGTACW	1 cut(s)	118
TfiI	GAWTC	3 cut(s)	35, 139, 569
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	429, 528
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	229, 325
Tsp45I	GTSAC	1 cut(s)	40
TspGWI	ACGGA	2 cut(s)	87, 151
TspRI	CASTG	2 cut(s)	429, 528
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	2 cut(s)	506, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.