Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007195

Physical Location & Seq

Genomic Coordinates Reverse (-)

677363 .. 683543

Gene Structure 6181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G008100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCATCCACATCTTATGCCAGCAAGAGCCCACTGCTCATGAAAGACACATCCTCTCTCTATCTTCCATACCCAGCACCTCTTGCTAAACACGAGGAAGTTGTAGCCAATCCTAAGCTGTTCATGGCTACTTTGGAAAAGCTCCATGCTTCAATGGGAACCAAGTTCATGATCCCTATTATAGGAGGAAAAGAGCTAGATTTGCATCGACTCTTTGTGGAGGTAACTTCCCGTGGGGGTATTGAGAAGATTATTAGAGATAGAAGATGGAAGGAAGTTACCGCTGTTTTCAACTTTCCATCCACAGCTACAAATGCTTCTTTTGTGTTGCGGAAATATTATAATTCATTGCTTCTCCACTATGAACAAATTTACTATTTTAAAGCTCAAGCATGGAATCCTCTCTCTTCTGATAATTCTCACAGCCCTTCAATGACAGCCGTTCCAGCTGCAAGGGGAGGAACTAAACGAAAAGCAGCTGAAGCTCATGCTACTATGCATCAGCCAACACAGATAAACTCAGAATTACCTGGAGCCAGGACAACAGCATCATCAGAAGATACTGTGACAGGGGTTATTGATGGGAAATTTGAAAATGGATATCTTGTTACCGTCATCAAAGGCTCAACGAAGCTAAGAGGTGTACTTTATCAGGCTCCAATGAACCCAGTACGTGGAGTTCCACAAGTCCCACAAAATTATAGCATGTTGGTTAACAGAAATGAGAGTGCCTCAGCTATTATTCCTGGCGTCCACCGTCGTCGCCGAAGGAAGAAATCTGAGATTAAAAGGAGGGATCCTGCTCATCCAAAACCCAACAGAAGCGGATATAACTTTTTCTTTGCAGAACAGCATGCAAGGCTGAAGCCACTTCATCCTGGGAAGGATAGAGAGATAAGTAGAATGATTGGTGAACTCTGGAATAAATTGAAGGAGTCTGAAAAATCAGTGTATCAGGAGAAAGCCGTTAAAGATAAGGAACGATATCGAATAGAAATGGAGGATTACCGGGAGAGGTTGAAAGCCGGTCAGGTCATTAGTGATGCAGTGCCACTACAACAGCGGTTTCCTGAAGTCAATCCAAGCATGGTTGAATCCGATGCAAAGATCGAAGAAACCGAGCCGAGAGACTCCCCACAAACACCAGATGAGAGCAATGAGAGTAATTCTAGCAAAACAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000217 GO:0000400 GO:0000902 GO:0000904 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042995 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

396

Amino Acids

44.69

Weight (kDa)

9.62

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04880
fragaria_vesca	FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370
malus_domestica	MD04G1008800.v1.1
prunus_persica	Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1
pyrus_communis	pycom04g00660
rosa_chinensis	RchiOBHm_Chr4g0415261
rosa_laevigata	RLG00000008083
rosa_multiflora	Rmu_sc0003551.1_g000023
rosa_roxburghii	Rroxscaffold_5G00359070
rosa_rugosa	Rorug04G0132600 Rorug04G0132700 Rorug04G0132800
rosa_samantha	Rh4AG193400 Rh4BG192000 Rh4CG204500 Rh4DG191300
rosa_wichuraiana	Rw4G016460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	674
AciI	CCGC	4 cut(s)	282, 331, 825, 1063
AclWI	GGATC	3 cut(s)	166, 791, 804
AcsI	RAATTY	2 cut(s)	369, 587
AcuI	CTGAAG	3 cut(s)	501, 884, 1092
AcyI	GRCGYC	1 cut(s)	750
AfaI	GTAC	2 cut(s)	645, 672
AfiI	CCNNNNNNNGG	2 cut(s)	182, 674
AgsI	TTSAA	7 cut(s)	153, 292, 432, 593, 931, 1021, 1094
AjnI	CCWGG	4 cut(s)	529, 536, 745, 877
Alw26I	GTCTC	1 cut(s)	1122
AlwI	GGATC	3 cut(s)	166, 791, 804
ApeKI	GCWGC	2 cut(s)	449, 476
ApoI	RAATTY	2 cut(s)	369, 587
AsuC2I	CCSGG	1 cut(s)	1010
AsuHPI	GGTGA	1 cut(s)	923
BamHI	GGATCC	1 cut(s)	796
BanII	GRGCYC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	92
BbvCI	CCTCAGC	1 cut(s)	733
BbvI	GCAGC	2 cut(s)	436, 488
BccI	CCATC	3 cut(s)	261, 307, 575
BceAI	ACGGC	2 cut(s)	425, 950
BciT130I	CCWGG	4 cut(s)	531, 538, 747, 879
BcnI	CCSGG	1 cut(s)	1010
BcoDI	GTCTC	1 cut(s)	1122
BfaI	CTAG	2 cut(s)	197, 1170
BisI	GCNGC	2 cut(s)	450, 477
BlsI	GCNGC	2 cut(s)	451, 478
Bme1390I	CCNGG	5 cut(s)	531, 538, 747, 879, 1010
BmiI	GGNNCC	4 cut(s)	160, 535, 657, 798
BmrFI	CCNGG	5 cut(s)	531, 538, 747, 879, 1010
BmrI	ACTGGG	1 cut(s)	662
BmsI	GCATC	6 cut(s)	14, 214, 508, 557, 1033, 1090
BmuI	ACTGGG	1 cut(s)	662
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	2 cut(s)	114, 733
BpuEI	CTTGAG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	1010
BsaAI	YACGTR	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	750
BsaJI	CCNNGG	2 cut(s)	232, 878
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 674
Bse118I	RCCGGY	1 cut(s)	1025
Bse1I	ACTGG	1 cut(s)	668
Bse3DI	GCAATG	2 cut(s)	347, 1162
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	4 cut(s)	531, 538, 747, 879
BseDI	CCNNGG	2 cut(s)	232, 878
BseGI	GGATG	5 cut(s)	5, 50, 299, 805, 874
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	182, 674
BseMI	GCAATG	2 cut(s)	347, 1162
BseMII	CTCAG	3 cut(s)	534, 747, 771
BseNI	ACTGG	1 cut(s)	668
BseXI	GCAGC	2 cut(s)	436, 488
BseYI	CCCAGC	1 cut(s)	73
BsiSI	CCGG	2 cut(s)	1009, 1026
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	2 cut(s)	182, 674
BsmAI	GTCTC	1 cut(s)	1122
BsmFI	GGGAC	1 cut(s)	674
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	3 cut(s)	171, 796, 1107
BspACI	CCGC	4 cut(s)	282, 331, 825, 1063
BspCNI	CTCAG	3 cut(s)	533, 746, 772
BspHI	TCATGA	2 cut(s)	39, 168
BspLI	GGNNCC	4 cut(s)	160, 535, 657, 798
BspPI	GGATC	3 cut(s)	166, 791, 804
BsrDI	GCAATG	2 cut(s)	347, 1162
BsrFI	RCCGGY	1 cut(s)	1025
BsrI	ACTGG	1 cut(s)	668
BssAI	RCCGGY	1 cut(s)	1025
BssECI	CCNNGG	2 cut(s)	232, 878
BssMI	GATC	3 cut(s)	171, 796, 1107
BssNI	GRCGYC	1 cut(s)	750
BssSI	CACGAG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	4 cut(s)	531, 538, 747, 879
Bst4CI	ACNGT	3 cut(s)	565, 613, 758
Bst6I	CTCTTC	1 cut(s)	412
BstACI	GRCGYC	1 cut(s)	750
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	22, 855
BstDEI	CTNAG	5 cut(s)	114, 520, 635, 733, 780
BstDSI	CCRYGG	1 cut(s)	232
BstENI	CCTNNNNNAGG	1 cut(s)	180
BstF5I	GGATG	5 cut(s)	5, 50, 299, 805, 874
BstKTI	GATC	3 cut(s)	174, 799, 1110
BstMAI	GTCTC	1 cut(s)	1122
BstMBI	GATC	3 cut(s)	171, 796, 1107
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 202, 314, 446, 482, 859
BstNI	CCWGG	4 cut(s)	531, 538, 747, 879
BstNSI	RCATGY	2 cut(s)	709, 857
BstSCI	CCNGG	5 cut(s)	529, 536, 745, 877, 1008
BstV1I	GCAGC	2 cut(s)	436, 488
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	5 cut(s)	5, 50, 299, 805, 874
BtsI	GCAGTG	2 cut(s)	32, 1053
BtsIMutI	CAGTG	3 cut(s)	32, 954, 1053
Cac8I	GCNNGC	2 cut(s)	22, 855
CciI	TCATGA	2 cut(s)	39, 168
Cfr10I	RCCGGY	1 cut(s)	1025
CseI	GACGC	1 cut(s)	739
Csp6I	GTAC	2 cut(s)	644, 671
CviAII	CATG	9 cut(s)	40, 124, 146, 169, 393, 488, 706, 854, 1087
CviQI	GTAC	2 cut(s)	644, 671
DdeI	CTNAG	5 cut(s)	114, 520, 635, 733, 780
DpnI	GATC	3 cut(s)	173, 798, 1109
DpnII	GATC	3 cut(s)	171, 796, 1107
DraI	TTTAAA	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	32
Eco32I	GATATC	2 cut(s)	602, 986
Eco57I	CTGAAG	3 cut(s)	501, 884, 1092
EcoNI	CCTNNNNNAGG	1 cut(s)	180
EcoRII	CCWGG	4 cut(s)	529, 536, 745, 877
EcoRV	GATATC	2 cut(s)	602, 986
EcoT22I	ATGCAT	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	9 cut(s)	43, 127, 149, 172, 396, 491, 709, 857, 1090
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	9 cut(s)	39, 123, 145, 168, 392, 487, 705, 853, 1086
Fnu4HI	GCNGC	2 cut(s)	450, 477
FokI	GGATG	4 cut(s)	37, 286, 792, 861
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	450, 477
FspBI	CTAG	2 cut(s)	197, 1170
GluI	GCNGC	2 cut(s)	450, 477
GsaI	CCCAGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	552
HapII	CCGG	2 cut(s)	1009, 1026
HgaI	GACGC	1 cut(s)	739
Hin1I	GRCGYC	1 cut(s)	750
Hin1II	CATG	9 cut(s)	43, 127, 149, 172, 396, 491, 709, 857, 1090
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	5 cut(s)	210, 397, 935, 1094, 1130
HpaI	GTTAAC	1 cut(s)	715
HpaII	CCGG	2 cut(s)	1009, 1026
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	4 cut(s)	644, 715, 754, 914
Hpy188I	TCNGA	6 cut(s)	412, 523, 556, 781, 940, 1099
Hpy188III	TCNNGA	5 cut(s)	40, 169, 919, 956, 1070
Hpy8I	GTNNAC	4 cut(s)	644, 715, 754, 914
Hpy99I	CGWCG	2 cut(s)	762, 765
HpyAV	CCTTC	5 cut(s)	265, 438, 762, 877, 925
HpyCH4III	ACNGT	3 cut(s)	565, 613, 758
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	7 cut(s)	205, 452, 499, 845, 857, 1046, 1103
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 202, 314, 446, 482, 859
HpyF3I	CTNAG	5 cut(s)	114, 520, 635, 733, 780
HpySE526I	ACGT	1 cut(s)	673
Hsp92I	GRCGYC	1 cut(s)	750
Hsp92II	CATG	9 cut(s)	43, 127, 149, 172, 396, 491, 709, 857, 1090
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	3 cut(s)	171, 796, 1107
LmnI	GCTCC	3 cut(s)	147, 533, 661
Lsp1109I	GCAGC	2 cut(s)	436, 488
LweI	GCATC	6 cut(s)	14, 214, 508, 557, 1033, 1090
MaeI	CTAG	2 cut(s)	197, 1170
MaeII	ACGT	1 cut(s)	673
MaeIII	GTNAC	4 cut(s)	223, 277, 565, 607
MalI	GATC	3 cut(s)	173, 798, 1109
MboI	GATC	3 cut(s)	171, 796, 1107
MboII	GAAGA	7 cut(s)	56, 259, 276, 399, 569, 784, 1124
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	8 cut(s)	343, 369, 415, 524, 587, 697, 926, 1165
MlyI	GAGTC	3 cut(s)	204, 944, 1124
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	4 cut(s)	381, 714, 786, 969
MspA1I	CMGCKG	4 cut(s)	284, 449, 479, 1063
MspI	CCGG	2 cut(s)	1009, 1026
MspR9I	CCNGG	5 cut(s)	531, 538, 747, 879, 1010
MvaI	CCWGG	4 cut(s)	531, 538, 747, 879
MwoI	GCNNNNNNNGC	6 cut(s)	83, 202, 314, 446, 482, 859
NciI	CCSGG	1 cut(s)	1010
NdeII	GATC	3 cut(s)	171, 796, 1107
NlaIII	CATG	9 cut(s)	43, 127, 149, 172, 396, 491, 709, 857, 1090
NlaIV	GGNNCC	4 cut(s)	160, 535, 657, 798
NmeAIII	GCCGAG	1 cut(s)	1149
NmuCI	GTSAC	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	2 cut(s)	709, 857
PaeI	GCATGC	1 cut(s)	857
PagI	TCATGA	2 cut(s)	39, 168
PcsI	WCGNNNNNNNCGW	1 cut(s)	1116
PfeI	GAWTC	2 cut(s)	397, 1094
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	2 cut(s)	451, 478
PleI	GAGTC	3 cut(s)	204, 943, 1124
PpsI	GAGTC	3 cut(s)	204, 943, 1124
Ppu21I	YACGTR	1 cut(s)	674
PsiI	TTATAA	1 cut(s)	342
Psp6I	CCWGG	4 cut(s)	529, 536, 745, 877
PspFI	CCCAGC	1 cut(s)	73
PspGI	CCWGG	4 cut(s)	529, 536, 745, 877
PspN4I	GGNNCC	4 cut(s)	160, 535, 657, 798
PsrI	GAACNNNNNNTAC	2 cut(s)	663, 695
PsuI	RGATCY	1 cut(s)	796
PvuII	CAGCTG	2 cut(s)	449, 479
RsaI	GTAC	2 cut(s)	645, 672
RsaNI	GTAC	2 cut(s)	644, 671
SaqAI	TTAA	4 cut(s)	381, 714, 786, 969
SatI	GCNGC	2 cut(s)	450, 477
Sau3AI	GATC	3 cut(s)	171, 796, 1107
SchI	GAGTC	3 cut(s)	204, 944, 1124
ScrFI	CCNGG	5 cut(s)	531, 538, 747, 879, 1010
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	6 cut(s)	14, 214, 508, 557, 1033, 1090
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
SphI	GCATGC	1 cut(s)	857
Sse9I	AATT	8 cut(s)	343, 369, 415, 524, 587, 697, 926, 1165
SsiI	CCGC	4 cut(s)	282, 331, 825, 1063
SspI	AATATT	1 cut(s)	338
SspMI	CTAG	2 cut(s)	197, 1170
StyD4I	CCNGG	5 cut(s)	529, 536, 745, 877, 1008
TaaI	ACNGT	3 cut(s)	565, 613, 758
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	3 cut(s)	208, 988, 1110
TasI	AATT	8 cut(s)	343, 369, 415, 524, 587, 697, 926, 1165
TatI	WGTACW	1 cut(s)	643
TfiI	GAWTC	2 cut(s)	397, 1094
Tru1I	TTAA	4 cut(s)	381, 714, 786, 969
Tru9I	TTAA	4 cut(s)	381, 714, 786, 969
TscAI	CASTG	3 cut(s)	39, 954, 1053
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	2 cut(s)	449, 476
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	7 cut(s)	56, 112, 157, 336, 378, 677, 863
TspRI	CASTG	3 cut(s)	39, 954, 1053
Van91I	CCANNNNNTGG	1 cut(s)	674
XagI	CCTNNNNNAGG	1 cut(s)	180
XapI	RAATTY	2 cut(s)	369, 587
XceI	RCATGY	2 cut(s)	709, 857
XspI	CTAG	2 cut(s)	197, 1170
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.