AT1G04985

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012978
Physical Location & Seq
Reverse (-)
1416342 .. 1419027
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04985.2

Sequence Viewer

Length: 582 bp
ATGAATCGGCTGAGAGGCCGAGGTACACCGATTCTGGGTTCCGCACTCGTGCCTCAGCTGAAGAAAAAAGCCCTAAATTCATTGGTCGCCGTCCAGGATTCATATCTATCCACCAAGGACTTGTTCGAGAGGCACAGGGTCGTGTTTACAGTTGGAACTTCTATAGCATCTGTTGCTACGGCTTGGATTGGTTACTCATTACGACATTACAATGAAACTAGAATTAATCAGAGGCTGGAGTCCATTGAGAATGCGATGAAAAACACCCAAGAGTTAGAACGAGGAGAACTGAAGAAGCTCGTTGATCCAGTCGGTTCCAGGTTCACTACAACAATTGCCACAGCGGGAACCACTTTGATCCTCGGGTATGGGTTGGGTTGGCGAGGCGGGATATGGTATGCAAATAGGAAGTTTAGAAGGGAGCAAATGAGATTGGCCGGGCAGTTAAAACCGAGAGAATGGAAGTTACTAGGGAGGATAAAACCTCGAGCTTGGCCAACAACAAAGTTTCTCAGACGACCATTCCCAAGACAGAACAAAACAACAGAAAATGCTTTGAAGGCACCAGAATGTGGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.92

Weight (kDa)

10.98

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04985 AT1G04985
fragaria_vesca FvH4_6g41990
malus_domestica MD17G1107300.v1.1
prunus_persica Prupe.3G209000_v2.0.a1 Prupe.3G209000_v2.0.a1
pyrus_communis pycom09g03990 pycom17g10000
rosa_chinensis RchiOBHm_Chr2g0157891
rosa_laevigata RLG00000021034
rosa_multiflora Rmu_sc0002441.1_g000006
rosa_roxburghii Rroxscaffold_2G00091870
rosa_rugosa Rorug02G0464200
rosa_samantha Rh2AG529600 Rh2BG544200 Rh2CG513900 Rh2DG552500
rosa_wichuraiana Rw2G043820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 562
AccB7I CCANNNNNTGG 1 cut(s) 572
AciI CCGC 3 cut(s) 42, 344, 387
AclWI GGATC 2 cut(s) 299, 352
AcoI YGGCCR 2 cut(s) 435, 494
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 2 cut(s) 80, 311
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 2 cut(s) 35, 572
AgsI TTSAA 1 cut(s) 559
AjnI CCWGG 2 cut(s) 93, 317
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 3 cut(s) 58, 298, 491
AluI AGCT 3 cut(s) 58, 298, 491
AlwI GGATC 2 cut(s) 299, 352
AlwNI CAGNNNCTG 1 cut(s) 235
Ama87I CYCGRG 2 cut(s) 362, 486
AoxI GGCC 3 cut(s) 16, 435, 494
ApoI RAATTY 1 cut(s) 76
AseI ATTAAT 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 439
AvaI CYCGRG 2 cut(s) 362, 486
BalI TGGCCA 1 cut(s) 496
BanI GGYRCC 1 cut(s) 562
BauI CACGAG 1 cut(s) 47
BbvCI CCTCAGC 1 cut(s) 54
BceAI ACGGC 2 cut(s) 74, 195
BciT130I CCWGG 2 cut(s) 95, 319
BcnI CCSGG 1 cut(s) 439
BfaI CTAG 2 cut(s) 219, 470
BfmI CTRYAG 1 cut(s) 162
Bme1390I CCNGG 3 cut(s) 95, 319, 439
BmeT110I CYCGRG 2 cut(s) 362, 486
BmiI GGNNCC 4 cut(s) 40, 316, 349, 564
BmrFI CCNGG 3 cut(s) 95, 319, 439
BmsI GCATC 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 19, 114, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 572
Bse1I ACTGG 1 cut(s) 308
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 2 cut(s) 95, 319
BseDI CCNNGG 3 cut(s) 19, 114, 361
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 35, 572
BseMII CTCAG 2 cut(s) 68, 526
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 297
BshFI GGCC 3 cut(s) 18, 437, 496
BshNI GGYRCC 1 cut(s) 562
BsiHKCI CYCGRG 2 cut(s) 362, 486
BsiSI CCGG 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 35, 572
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 3 cut(s) 18, 437, 496
BsoBI CYCGRG 2 cut(s) 362, 486
Bsp143I GATC 2 cut(s) 304, 357
BspACI CCGC 3 cut(s) 42, 344, 387
BspANI GGCC 3 cut(s) 18, 437, 496
BspCNI CTCAG 2 cut(s) 67, 525
BspLI GGNNCC 4 cut(s) 40, 316, 349, 564
BspPI GGATC 2 cut(s) 299, 352
BspT107I GGYRCC 1 cut(s) 562
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 3 cut(s) 19, 114, 361
BssMI GATC 2 cut(s) 304, 357
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 95, 319
Bst4CI ACNGT 1 cut(s) 151
BstAPI GCANNNNNTGC 1 cut(s) 173
BstDEI CTNAG 3 cut(s) 11, 54, 512
BstKTI GATC 2 cut(s) 307, 360
BstMBI GATC 2 cut(s) 304, 357
BstMWI GCNNNNNNNGC 2 cut(s) 173, 560
BstNI CCWGG 2 cut(s) 95, 319
BstSCI CCNGG 3 cut(s) 93, 317, 437
BstSFI CTRYAG 1 cut(s) 162
BsuRI GGCC 3 cut(s) 18, 437, 496
BtgZI GCGATG 1 cut(s) 269
CaiI CAGNNNCTG 1 cut(s) 235
Csp6I GTAC 1 cut(s) 24
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 3 cut(s) 11, 54, 512
DpnI GATC 2 cut(s) 306, 359
DpnII GATC 2 cut(s) 304, 357
EaeI YGGCCR 2 cut(s) 435, 494
Eco130I CCWWGG 1 cut(s) 114
Eco57I CTGAAG 2 cut(s) 80, 311
Eco88I CYCGRG 2 cut(s) 362, 486
EcoRII CCWGG 2 cut(s) 93, 317
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaiI YATR 5 cut(s) 103, 164, 369, 394, 399
FauI CCCGC 2 cut(s) 337, 380
FspBI CTAG 2 cut(s) 219, 470
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 3 cut(s) 18, 437, 496
HapII CCGG 1 cut(s) 438
HinfI GANTC 4 cut(s) 4, 31, 98, 239
HpaII CCGG 1 cut(s) 438
Hpy166II GTNNAC 3 cut(s) 26, 147, 324
Hpy188I TCNGA 2 cut(s) 231, 515
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 3 cut(s) 26, 147, 324
HpyAV CCTTC 2 cut(s) 411, 553
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 560
HpyF3I CTNAG 3 cut(s) 11, 54, 512
Kzo9I GATC 2 cut(s) 304, 357
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 9 cut(s) 20, 80, 107, 121, 221, 304, 321, 331, 451
LweI GCATC 1 cut(s) 176
MaeI CTAG 2 cut(s) 219, 470
MaeIII GTNAC 2 cut(s) 191, 465
MalI GATC 2 cut(s) 306, 359
MboI GATC 2 cut(s) 304, 357
MboII GAAGA 2 cut(s) 73, 304
MfeI CAATTG 1 cut(s) 333
MlsI TGGCCA 1 cut(s) 496
MluCI AATT 3 cut(s) 76, 222, 333
MluNI TGGCCA 1 cut(s) 496
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 133
Mox20I TGGCCA 1 cut(s) 496
MscI TGGCCA 1 cut(s) 496
MseI TTAA 2 cut(s) 225, 446
MslI CAYNNNNRTG 2 cut(s) 210, 568
Msp20I TGGCCA 1 cut(s) 496
MspA1I CMGCKG 2 cut(s) 58, 344
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 3 cut(s) 95, 319, 439
MunI CAATTG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 2 cut(s) 95, 319
MwoI GCNNNNNNNGC 2 cut(s) 173, 560
NciI CCSGG 1 cut(s) 439
NdeII GATC 2 cut(s) 304, 357
NlaIV GGNNCC 4 cut(s) 40, 316, 349, 564
NmeAIII GCCGAG 1 cut(s) 44
PaeR7I CTCGAG 1 cut(s) 486
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 3 cut(s) 4, 31, 98
PflMI CCANNNNNTGG 1 cut(s) 572
PfoI TCCNGGA 1 cut(s) 93
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 93, 317
PspGI CCWGG 2 cut(s) 93, 317
PspN4I GGNNCC 4 cut(s) 40, 316, 349, 564
PspXI VCTCGAGB 1 cut(s) 486
PstNI CAGNNNCTG 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 58
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 2 cut(s) 210, 568
SaqAI TTAA 2 cut(s) 225, 446
Sau3AI GATC 2 cut(s) 304, 357
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 3 cut(s) 95, 319, 439
SetI ASST 7 cut(s) 25, 60, 300, 323, 487, 493, 580
SfaNI GCATC 1 cut(s) 176
SfcI CTRYAG 1 cut(s) 162
Sfr274I CTCGAG 1 cut(s) 486
SlaI CTCGAG 1 cut(s) 486
SmiMI CAYNNNNRTG 2 cut(s) 210, 568
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
Sse9I AATT 3 cut(s) 76, 222, 333
SsiI CCGC 3 cut(s) 42, 344, 387
SspMI CTAG 2 cut(s) 219, 470
StyD4I CCNGG 3 cut(s) 93, 317, 437
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 2 cut(s) 126, 487
TasI AATT 3 cut(s) 76, 222, 333
TfiI GAWTC 3 cut(s) 4, 31, 98
Tru1I TTAA 2 cut(s) 225, 446
Tru9I TTAA 2 cut(s) 225, 446
TspDTI ATGAA 5 cut(s) 17, 69, 90, 228, 272
Van91I CCANNNNNTGG 1 cut(s) 572
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 1 cut(s) 76
XhoI CTCGAG 1 cut(s) 486
XspI CTAG 2 cut(s) 219, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.