MD17G1107300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012978
Physical Location & Seq
Forward (+)
9237967 .. 9240463
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1107300.v1.1.491

Sequence Viewer

Length: 573 bp
ATGCAGCGCCTTAGAAGCTCAGGGACCGTACTTTCGCGCTCGCAAGCCATAACCCAGTTGAGGAAGAAAGCTTTCAGATCATGGGCTGCCGTCCAGGACACTTATTTTTCCACAAAGGATATATTTGAAAGCCATAAGGTGGTATTTACAGTTGGAACTTCCATTGCATCAGTCGCCACCGCATGGTTTGGCTATACTCTACGCCACGTACATGTATCAAGAGTTGATCAAAGGCTCGAATCAATTGAAAAAGCTATGAAAAACAATCATAATCTAGAACAGTCAGAAATTAGAAACATCATGGATTCTGGAACTATAGGTCTTCCTTCATGCATAGCCACTGCAGGAACCACTTTAGTTATCGGCTATGCTTTGGGTTGGCGAGGTGGAAGGTGGTATGCAAATAGGAAGTTCAGAAGGGAGCAGATGAAATTGCTAGGGCAAATTAAACCGAAAAGGTGGCCACTGCTTAGGCGGATAGAACCTAAAGCATGGCAATTCCAATTTCTCAGAAGACCGCTAACCAGACCGAGAACACAAGATAATCATGTCAAAACATCGGAAAAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.97

Weight (kDa)

11.22

Isoelectric Point (pI)

65.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04985 AT1G04985
fragaria_vesca FvH4_6g41990
malus_domestica MD17G1107300.v1.1
prunus_persica Prupe.3G209000_v2.0.a1 Prupe.3G209000_v2.0.a1
pyrus_communis pycom09g03990 pycom17g10000
rosa_chinensis RchiOBHm_Chr2g0157891
rosa_laevigata RLG00000021034
rosa_multiflora Rmu_sc0002441.1_g000006
rosa_roxburghii Rroxscaffold_2G00091870
rosa_rugosa Rorug02G0464200
rosa_samantha Rh2AG529600 Rh2BG544200 Rh2CG513900 Rh2DG552500
rosa_wichuraiana Rw2G043820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 139, 183
AccII CGCG 1 cut(s) 37
AciI CCGC 3 cut(s) 180, 475, 518
AcoI YGGCCR 1 cut(s) 461
AfaI GTAC 2 cut(s) 30, 210
AfiI CCNNNNNNNGG 3 cut(s) 60, 139, 183
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 2 cut(s) 128, 248
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 3 cut(s) 18, 71, 254
AluI AGCT 3 cut(s) 18, 71, 254
AoxI GGCC 1 cut(s) 461
ApeKI GCWGC 2 cut(s) 4, 86
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 2 cut(s) 9, 39
AspS9I GGNCC 1 cut(s) 24
AvaII GGWCC 1 cut(s) 24
BalI TGGCCA 1 cut(s) 463
BbsI GAAGAC 2 cut(s) 314, 520
BbvI GCAGC 2 cut(s) 16, 73
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 95
BclI TGATCA 1 cut(s) 226
BfaI CTAG 2 cut(s) 275, 437
BfmI CTRYAG 2 cut(s) 315, 342
BfoI RGCGCY 1 cut(s) 10
BisI GCNGC 2 cut(s) 5, 87
BlsI GCNGC 2 cut(s) 6, 88
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 2 cut(s) 25, 349
BmrFI CCNGG 1 cut(s) 95
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 49
BpiI GAAGAC 2 cut(s) 314, 520
Bpu10I CCTNAGC 2 cut(s) 19, 470
BsaAI YACGTR 1 cut(s) 208
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 139, 183
Bse1I ACTGG 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 95
BseLI CCNNNNNNNGG 3 cut(s) 60, 139, 183
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 2 cut(s) 33, 523
BseNI ACTGG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 16, 73
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 463
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 3 cut(s) 60, 139, 183
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 463
Bsp143I GATC 2 cut(s) 77, 226
BspACI CCGC 3 cut(s) 180, 475, 518
BspANI GGCC 1 cut(s) 463
BspCNI CTCAG 2 cut(s) 32, 522
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 25, 349
BspMAI CTGCAG 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 1 cut(s) 55
BssMI GATC 2 cut(s) 77, 226
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 3 cut(s) 28, 151, 282
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 41, 45
BstDEI CTNAG 4 cut(s) 11, 19, 470, 509
BstFNI CGCG 1 cut(s) 37
BstH2I RGCGCY 1 cut(s) 10
BstHHI GCGC 2 cut(s) 9, 39
BstKTI GATC 2 cut(s) 80, 229
BstMBI GATC 2 cut(s) 77, 226
BstMWI GCNNNNNNNGC 2 cut(s) 15, 173
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 2 cut(s) 315, 342
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 16, 73
BstV2I GAAGAC 2 cut(s) 314, 520
BsuRI GGCC 1 cut(s) 463
BtsI GCAGTG 2 cut(s) 339, 464
BtsIMutI CAGTG 2 cut(s) 339, 464
Cac8I GCNNGC 2 cut(s) 41, 45
CfoI GCGC 2 cut(s) 9, 39
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 29, 209
CviAII CATG 7 cut(s) 81, 183, 212, 301, 330, 492, 548
CviQI GTAC 2 cut(s) 29, 209
DdeI CTNAG 4 cut(s) 11, 19, 470, 509
DpnI GATC 2 cut(s) 79, 228
DpnII GATC 2 cut(s) 77, 226
EaeI YGGCCR 1 cut(s) 461
EciI GGCGGA 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 335
FaeI CATG 7 cut(s) 84, 186, 215, 304, 333, 495, 551
FaqI GGGAC 1 cut(s) 37
FatI CATG 7 cut(s) 80, 182, 211, 300, 329, 491, 547
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 5, 87
Fsp4HI GCNGC 2 cut(s) 5, 87
FspBI CTAG 2 cut(s) 275, 437
GlaI GCGC 2 cut(s) 8, 38
GluI GCNGC 2 cut(s) 5, 87
HaeII RGCGCY 1 cut(s) 10
HaeIII GGCC 1 cut(s) 463
HhaI GCGC 2 cut(s) 9, 39
Hin1II CATG 7 cut(s) 84, 186, 215, 304, 333, 495, 551
Hin6I GCGC 2 cut(s) 7, 37
HinP1I GCGC 2 cut(s) 7, 37
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 2 cut(s) 239, 305
Hpy188I TCNGA 5 cut(s) 77, 286, 416, 512, 562
Hpy188III TCNNGA 3 cut(s) 219, 275, 309
HpyAV CCTTC 3 cut(s) 336, 384, 411
HpyCH4III ACNGT 3 cut(s) 28, 151, 282
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 5 cut(s) 4, 167, 333, 344, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 173
HpyF3I CTNAG 4 cut(s) 11, 19, 470, 509
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 7 cut(s) 84, 186, 215, 304, 333, 495, 551
HspAI GCGC 2 cut(s) 7, 37
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 2 cut(s) 77, 226
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 7 cut(s) 6, 68, 80, 107, 294, 330, 538
Lsp1109I GCAGC 2 cut(s) 16, 73
LweI GCATC 1 cut(s) 176
MaeI CTAG 2 cut(s) 275, 437
MaeII ACGT 1 cut(s) 207
MalI GATC 2 cut(s) 79, 228
MboI GATC 2 cut(s) 77, 226
MboII GAAGA 3 cut(s) 76, 314, 525
MfeI CAATTG 1 cut(s) 243
MlsI TGGCCA 1 cut(s) 463
MluCI AATT 6 cut(s) 243, 288, 431, 444, 497, 503
MluNI TGGCCA 1 cut(s) 463
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 2 cut(s) 54, 377
Mox20I TGGCCA 1 cut(s) 463
Mph1103I ATGCAT 1 cut(s) 335
MroXI GAANNNNTTC 1 cut(s) 71
MscI TGGCCA 1 cut(s) 463
MseI TTAA 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 463
MspR9I CCNGG 1 cut(s) 95
MunI CAATTG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 15, 173
NdeII GATC 2 cut(s) 77, 226
NlaIII CATG 7 cut(s) 84, 186, 215, 304, 333, 495, 551
NlaIV GGNNCC 2 cut(s) 25, 349
NsiI ATGCAT 1 cut(s) 335
NspI RCATGY 1 cut(s) 215
PciI ACATGT 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 239, 305
PflMI CCANNNNNTGG 2 cut(s) 139, 183
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 2 cut(s) 6, 88
Ppu21I YACGTR 1 cut(s) 208
PscI ACATGT 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 25, 349
PspPI GGNCC 1 cut(s) 24
PstI CTGCAG 1 cut(s) 346
RsaI GTAC 2 cut(s) 30, 210
RsaNI GTAC 2 cut(s) 29, 209
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 2 cut(s) 5, 87
Sau3AI GATC 2 cut(s) 77, 226
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 95
SfaNI GCATC 1 cut(s) 176
SfcI CTRYAG 2 cut(s) 315, 342
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 6 cut(s) 243, 288, 431, 444, 497, 503
SsiI CCGC 3 cut(s) 180, 475, 518
SspMI CTAG 2 cut(s) 275, 437
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 28, 151, 282
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 544
TasI AATT 6 cut(s) 243, 288, 431, 444, 497, 503
TfiI GAWTC 2 cut(s) 239, 305
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 2 cut(s) 346, 471
TseI GCWGC 2 cut(s) 4, 86
TspDTI ATGAA 3 cut(s) 272, 318, 443
TspRI CASTG 2 cut(s) 346, 471
Van91I CCANNNNNTGG 2 cut(s) 139, 183
VpaK11BI GGWCC 1 cut(s) 24
XbaI TCTAGA 1 cut(s) 274
XceI RCATGY 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 2 cut(s) 275, 437
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.