Rw2G043820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012978
Physical Location & Seq
Reverse (-)
70367761 .. 70370073
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043820.1

Sequence Viewer

Length: 648 bp
ATGAACCGACTTAGAGGCTCAGGGAAGCTATTTTCTCAGTCTCTGCCCCAATTAAGGACTAATATGAGGCATAGAGCTCTGAGATCATGGACTGCTGTTCAGGACACTTTTTTTTCAACCAAGGATGTGTTTGAAAGTCATAAGGTGGTGTTCACAGTTGGAACTTCTATAGCTTCAGTTGCCACAGCATGGATTGGATATACTGTACGCCACTTACATGATACAAGAGTTGATCGGAGGCTTGAGTCGATTGAAAAAACTATAAAAGAAAATCATCATATTAAAGAATCAGAAATAAGAGAAGTTATTGGTTCTGGAAGTATCAGTCTTTCTTCATGCATAGCCACTGCTGGAACCACTTTGATCATCGGCTATGCTTTGGGTTGGCGAGGTGGAAGGTGGTTTGCAAATAAGCAGTTCAGAAAGGAGCAGATGAAGTTGCTAGGGCACGTTAAGCCTAAAAGGTGGCAATTGCTTAGGCAGCGGATACAACAACCTAAAGGATGGCAATTCCAATTTCTTAAAAGACCATTACTCAAACACAAAACACCAGAAAATGCAGTCAAAACATGTGAAAAGATCAAGGACACTCAAACTGCACATAATTTGGAGAATCCTGTTAATCTTGTTAGCAAACAGATGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.79

Weight (kDa)

10.66

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04985 AT1G04985
fragaria_vesca FvH4_6g41990
malus_domestica MD17G1107300.v1.1
prunus_persica Prupe.3G209000_v2.0.a1 Prupe.3G209000_v2.0.a1
pyrus_communis pycom09g03990 pycom17g10000
rosa_chinensis RchiOBHm_Chr2g0157891
rosa_laevigata RLG00000021034
rosa_multiflora Rmu_sc0002441.1_g000006
rosa_roxburghii Rroxscaffold_2G00091870
rosa_rugosa Rorug02G0464200
rosa_samantha Rh2AG529600 Rh2BG544200 Rh2CG513900 Rh2DG552500
rosa_wichuraiana Rw2G043820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AciI CCGC 1 cut(s) 484
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 2 cut(s) 54, 189
AflIII ACRYGT 1 cut(s) 569
AgsI TTSAA 3 cut(s) 117, 134, 254
AluBI AGCT 3 cut(s) 28, 77, 173
AluI AGCT 3 cut(s) 28, 77, 173
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 450
BaeI ACNNNNGTAYC 2 cut(s) 213, 246
BanII GRGCYC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 493
BccI CCATC 1 cut(s) 498
BciVI GTATCC 1 cut(s) 480
BclI TGATCA 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 443
BfmI CTRYAG 1 cut(s) 168
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 1 cut(s) 482
BlsI GCNGC 1 cut(s) 483
BmiI GGNNCC 1 cut(s) 355
Bpu10I CCTNAGC 2 cut(s) 19, 476
BpuEI CTTGAG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 189
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 130, 509
BseLI CCNNNNNNNGG 2 cut(s) 54, 189
BseMII CTCAG 3 cut(s) 33, 50, 71
BseSI GKGCMC 1 cut(s) 450
BseXI GCAGC 1 cut(s) 493
BsgI GTGCAG 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 54, 189
BsmAI GTCTC 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 79, 450
Bsp143I GATC 4 cut(s) 83, 232, 363, 579
BspACI CCGC 1 cut(s) 484
BspCNI CTCAG 3 cut(s) 32, 49, 72
BspHI TCATGA 1 cut(s) 644
BspLI GGNNCC 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 4 cut(s) 83, 232, 363, 579
BssT1I CCWWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 157, 205
BstDEI CTNAG 5 cut(s) 11, 19, 36, 80, 476
BstF5I GGATG 2 cut(s) 130, 509
BstKTI GATC 4 cut(s) 86, 235, 366, 582
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 4 cut(s) 83, 232, 363, 579
BstMWI GCNNNNNNNGC 3 cut(s) 179, 454, 481
BstNSI RCATGY 1 cut(s) 573
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 493
BsuI GTATCC 1 cut(s) 480
BtsCI GGATG 2 cut(s) 130, 509
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
CaiI CAGNNNCTG 1 cut(s) 43
CciI TCATGA 1 cut(s) 644
Csp6I GTAC 1 cut(s) 206
CviAII CATG 6 cut(s) 87, 189, 218, 336, 570, 645
CviJI RGCY 8 cut(s) 18, 28, 77, 173, 241, 344, 372, 457
CviKI_1 RGCY 8 cut(s) 18, 28, 77, 173, 241, 344, 372, 457
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 5 cut(s) 11, 19, 36, 80, 476
DpnI GATC 4 cut(s) 85, 234, 365, 581
DpnII GATC 4 cut(s) 83, 232, 363, 579
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 6 cut(s) 90, 192, 221, 339, 573, 648
FatI CATG 6 cut(s) 86, 188, 217, 335, 569, 644
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 482
FokI GGATG 2 cut(s) 137, 516
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 482
FspBI CTAG 1 cut(s) 443
GluI GCNGC 1 cut(s) 482
Hin1II CATG 6 cut(s) 90, 192, 221, 339, 573, 648
HinfI GANTC 3 cut(s) 245, 287, 613
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 4 cut(s) 81, 237, 292, 422
Hpy188III TCNNGA 3 cut(s) 101, 315, 645
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 2 cut(s) 157, 205
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 4 cut(s) 339, 407, 560, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 454, 481
HpyF3I CTNAG 5 cut(s) 11, 19, 36, 80, 476
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 6 cut(s) 90, 192, 221, 339, 573, 648
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 4 cut(s) 83, 232, 363, 579
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 6 cut(s) 6, 86, 300, 336, 564, 630
Lsp1109I GCAGC 1 cut(s) 493
MaeI CTAG 1 cut(s) 443
MaeII ACGT 1 cut(s) 450
MalI GATC 4 cut(s) 85, 234, 365, 581
MboI GATC 4 cut(s) 83, 232, 363, 579
MboII GAAGA 1 cut(s) 324
MfeI CAATTG 1 cut(s) 470
MhlI GDGCHC 2 cut(s) 79, 450
MluCI AATT 5 cut(s) 50, 470, 509, 515, 604
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 4 cut(s) 8, 60, 231, 383
Mph1103I ATGCAT 1 cut(s) 341
MseI TTAA 5 cut(s) 53, 282, 453, 522, 621
MslI CAYNNNNRTG 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 484
MunI CAATTG 1 cut(s) 470
MwoI GCNNNNNNNGC 3 cut(s) 179, 454, 481
NdeII GATC 4 cut(s) 83, 232, 363, 579
NlaIII CATG 6 cut(s) 90, 192, 221, 339, 573, 648
NlaIV GGNNCC 1 cut(s) 355
NsiI ATGCAT 1 cut(s) 341
NspI RCATGY 1 cut(s) 573
PagI TCATGA 1 cut(s) 644
PciI ACATGT 1 cut(s) 569
PfeI GAWTC 2 cut(s) 287, 613
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 1 cut(s) 483
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PscI ACATGT 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 43
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 5 cut(s) 53, 282, 453, 522, 621
SatI GCNGC 1 cut(s) 482
Sau3AI GATC 4 cut(s) 83, 232, 363, 579
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 2 cut(s) 79, 450
SetI ASST 9 cut(s) 30, 79, 147, 175, 394, 401, 453, 467, 499
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 5 cut(s) 50, 470, 509, 515, 604
SsiI CCGC 1 cut(s) 484
SspMI CTAG 1 cut(s) 443
SstI GAGCTC 1 cut(s) 79
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 157, 205
TaiI ACGT 1 cut(s) 453
TaqI TCGA 1 cut(s) 248
TasI AATT 5 cut(s) 50, 470, 509, 515, 604
TfiI GAWTC 2 cut(s) 287, 613
Tru1I TTAA 5 cut(s) 53, 282, 453, 522, 621
Tru9I TTAA 5 cut(s) 53, 282, 453, 522, 621
TscAI CASTG 1 cut(s) 352
TseI GCWGC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 17, 324, 449
TspRI CASTG 1 cut(s) 352
Van91I CCANNNNNTGG 1 cut(s) 189
XceI RCATGY 1 cut(s) 573
XspI CTAG 1 cut(s) 443
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.