Rorug02G0464200
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
59542994 .. 59550244
7251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0464200.1

Sequence Viewer

Length: 378 bp
ATGACAACCAGAATATGTGTTGCGATTCGATCTTTTGAGAAACATCCATTGGGACTTCTGCCTTGCACGCGGAGGATTCAGTTGCCTGACACACGCGTCTTATATACCGTGTTACGATCACCTCATATTGATAAGAAGTCCAGAGAACAATTTCATATGATAACCAAGAAACTACTTCTGGTCATAGATGCAAAAGCAAATGAGTTGCAAAAGAAGTTCTTTTGGTTAAAACGCCAGCGTATACTTGGAGCTCAATATGAAATTATATTCAACTCAAAGACCCGTTTGGATAAGGGAAAACTCCAGACTTTGGTTAATAAGGAAACTGACACAACTCCTGTAGCAGAATTGGGGTTGAAGTCCATAATTTTCGGTTGA

Protein Analysis

125

Amino Acids

14.55

Weight (kDa)

10.22

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S10 PF00338 21 - 71 2.1e-09 Ribosomal protein S10p/S20e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000628)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 310
AccI GTMKAC 1 cut(s) 241
AccII CGCG 2 cut(s) 70, 96
AciI CCGC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 2 cut(s) 271, 358
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
Alw21I GWGCWC 1 cut(s) 253
Asp700I GAANNNNTTC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 111
BanII GRGCYC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 253
BfmI CTRYAG 1 cut(s) 339
BmsI GCATC 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 310
Bsh1236I CGCG 2 cut(s) 70, 96
BsiHKAI GWGCWC 1 cut(s) 253
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 29, 116
BspACI CCGC 1 cut(s) 70
BspFNI CGCG 2 cut(s) 70, 96
BssMI GATC 2 cut(s) 29, 116
BssNAI GTATAC 1 cut(s) 242
Bst1107I GTATAC 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 68, 236
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 2 cut(s) 70, 96
BstKTI GATC 2 cut(s) 32, 119
BstMBI GATC 2 cut(s) 29, 116
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 2 cut(s) 70, 96
BstZ17I GTATAC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 68, 236
CseI GACGC 1 cut(s) 85
CviJI RGCY 1 cut(s) 251
CviKI_1 RGCY 1 cut(s) 251
DpnI GATC 2 cut(s) 31, 118
DpnII GATC 2 cut(s) 29, 116
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 253
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 66
FauNDI CATATG 1 cut(s) 156
FblI GTMKAC 1 cut(s) 241
FokI GGATG 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 253
GsuI CTGGAG 1 cut(s) 287
HgaI GACGC 1 cut(s) 85
HinfI GANTC 2 cut(s) 25, 76
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 242
Hpy188III TCNNGA 2 cut(s) 141, 304
Hpy8I GTNNAC 1 cut(s) 242
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 66, 191, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 29, 116
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 7 cut(s) 22, 99, 154, 164, 248, 317, 351
LweI GCATC 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 111
MalI GATC 2 cut(s) 31, 118
MboI GATC 2 cut(s) 29, 116
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 4 cut(s) 149, 261, 347, 366
MluI ACGCGT 1 cut(s) 94
MnlI CCTC 2 cut(s) 66, 132
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 2 cut(s) 227, 315
MvnI CGCG 2 cut(s) 70, 96
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeI CATATG 1 cut(s) 156
NdeII GATC 2 cut(s) 29, 116
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 25, 76
PflMI CCANNNNNTGG 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 253
SacI GAGCTC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 227, 315
Sau3AI GATC 2 cut(s) 29, 116
SduI GDGCHC 1 cut(s) 253
SetI ASST 2 cut(s) 124, 253
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 339
Sse9I AATT 4 cut(s) 149, 261, 347, 366
SsiI CCGC 1 cut(s) 70
SstI GAGCTC 1 cut(s) 253
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 28
TasI AATT 4 cut(s) 149, 261, 347, 366
TfiI GAWTC 2 cut(s) 25, 76
Tru1I TTAA 2 cut(s) 227, 315
Tru9I TTAA 2 cut(s) 227, 315
TspDTI ATGAA 2 cut(s) 143, 273
Van91I CCANNNNNTGG 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.