Rmu_sc0002441.1_g000007
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002441.1
OG0000628
Physical Location & Seq
Forward (+)
29712 .. 31636
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002441.1_g000007.1.cds

Sequence Viewer

Length: 1158 bp
atggcgaacattggtacccctatcattgtagttgttctgttctgggggttggcagttgcaactcgaacaaagctgttctctgaagaagatgggattgctgtttcggcgttggctccatctggtagtgatggcatttgtgcatcaatggtggaagcacaaggctatccttgtgaagaacacacagtgacaacagaagatggctacatactcagtatgcagagaattccaggggggaagtctggggagacatcaggaaacaagataccggttcttctacaacatggactcctcatggatgggataacatggctgctcctacctccagaccaagctttggcattcctcttggcggataatgggtatgaggtgtggattgccaatacccgtggaacccaatatagcctcggccatacatcactcacacccgatgatccggcttattgggaatggtcatgggatgaattggtggtttatgacctcccggccacataccaatatgtgcataaccaagcaggacagaagattcattatgttggacattcactgggaactttgattgctcttggtgctttttcaaaagaccagctagtgaacatgttgagatcagctgtcttacttagcccaattgctcatgttggtcagatgacctcaccccttgcaagagctgccgctgaaaactttattgctgaggctttatacaaggcaggcgttgactgcacaaacctcttgacgtctttcaccggccagaattgctgcttaaatccatctattgtacaagtctttctagctcatgagcctcaggcatctgcaactaaaaacatgatccatatctctcagatgataagagacggaaaagttgcgatgtttgactacattgacaaggataagaaccaaaaacattacaggcaggacactcctccagagtacaaaatggcaagcattccgcatgaccttcctctcttcctcagttacggaggggcagatgcgctttctgatgtccaagatgtaaagctattgctcaacagcctcaaagatcatgatggagataagcttgtggttcagtacagagatgattatgctcatgctgattttgtcatgggtgaaactgctaagcgagatgtatatgatcctctcatggcattctttaaacttcagtga

Protein Analysis

385

Amino Acids

42.32

Weight (kDa)

5.0

Isoelectric Point (pI)

24.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000628)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14180 AT5G14180 AT5G14180 AT5G14180 AT5G14180
fragaria_vesca FvH4_6g41960 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g53200
malus_domestica MD09G1013100.v1.1 MD09G1115500.v1.1 MD09G1115600.v1.1 MD09G1115800.v1.1 MD17G1013800.v1.1 MD17G1107400.v1.1
prunus_persica Prupe.3G208900_v2.0.a1 Prupe.3G208900_v2.0.a1 Prupe.3G304100_v2.0.a1
pyrus_communis pycom09g04000 pycom09g04020 pycom09g04040 pycom111g01090 pycom111g01110 pycom17g01090 pycom17g10010
rosa_chinensis RchiOBHm_Chr2g0157861 RchiOBHm_Chr2g0157881 RchiOBHm_Chr2g0175241 RchiOBHm_Chr2g0175251
rosa_laevigata RLG00000021032 RLG00000021033 RLG00000022314 RLG00000022315
rosa_multiflora Rmu_co8368271.1_g000001 Rmu_co8519319.1_g000001 Rmu_co8519319.1_g000002 Rmu_sc0002441.1_g000007 Rmu_sc0002441.1_g000008 Rmu_sc0010083.1_g000002 Rmu_sc0015795.1_g000001 Rmu_sc0015795.1_g000002
rosa_roxburghii Rroxscaffold_1G00036740 Rroxscaffold_2G00077450 Rroxscaffold_2G00077460 Rroxscaffold_2G00091880 Rroxscaffold_2G00091890 Rroxscaffold_2G00127210
rosa_rugosa Rorug02G0464200 Rorug02G0464200 Rorug02G0582000 Rorug02G0582100 Rorug02G0582100 Rorug02G0582100 Rorug02G0582200 Rorug02G0582200 Rorug02G0582200
rosa_samantha Rh2AG529400 Rh2AG529500 Rh2AG662400 Rh2AG662500 Rh2BG544000 Rh2BG544100 Rh2BG673600 Rh2BG673700 Rh2CG513700 Rh2CG513800 Rh2CG636800 Rh2DG552400
rosa_wichuraiana Rw2G043800 Rw2G043810 Rw2G054330 Rw2G054340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 734
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 334
AciI CCGC 3 cut(s) 350, 669, 944
AclWI GGATC 3 cut(s) 425, 817, 1121
AcoI YGGCCR 3 cut(s) 406, 483, 742
AcsI RAATTY 1 cut(s) 222
AcuI CTGAAG 2 cut(s) 102, 1136
AcyI GRCGYC 1 cut(s) 731
AdeI CACNNNGTG 1 cut(s) 184
AfaI GTAC 4 cut(s) 16, 774, 926, 1064
AfiI CCNNNNNNNGG 2 cut(s) 334, 349
AflIII ACRYGT 1 cut(s) 594
AgeI ACCGGT 1 cut(s) 265
AgsI TTSAA 1 cut(s) 576
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 8 cut(s) 73, 332, 586, 608, 665, 788, 1012, 1051
AluI AGCT 8 cut(s) 73, 332, 586, 608, 665, 788, 1012, 1051
Alw26I GTCTC 2 cut(s) 239, 840
AlwI GGATC 3 cut(s) 425, 817, 1121
AoxI GGCC 3 cut(s) 406, 483, 742
ApeKI GCWGC 3 cut(s) 310, 665, 753
ApoI RAATTY 1 cut(s) 222
AsiGI ACCGGT 1 cut(s) 265
Asp718I GGTACC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 988
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 3 cut(s) 642, 730, 1112
AxyI CCTNAGG 1 cut(s) 798
BaeI ACNNNNGTAYC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 14
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 3 cut(s) 297, 652, 740
BccI CCATC 7 cut(s) 83, 122, 124, 191, 290, 772, 1034
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 2 cut(s) 239, 840
BfaI CTAG 2 cut(s) 587, 785
BisI GCNGC 4 cut(s) 311, 666, 669, 754
BlpI GCTNAGC 1 cut(s) 1110
BlsI GCNGC 4 cut(s) 312, 667, 670, 755
Bme1390I CCNGG 2 cut(s) 228, 482
BmiI GGNNCC 3 cut(s) 16, 114, 391
BmrFI CCNGG 2 cut(s) 228, 482
BmrI ACTGGG 1 cut(s) 554
BmsI GCATC 3 cut(s) 149, 812, 973
BmuI ACTGGG 1 cut(s) 554
BpmI CTGGAG 2 cut(s) 306, 903
Bpu10I CCTNAGC 1 cut(s) 687
Bpu1102I GCTNAGC 1 cut(s) 1110
BpuMI CCSGG 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 827
BsaHI GRCGYC 1 cut(s) 731
BsaJI CCNNGG 3 cut(s) 227, 385, 403
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 349
Bse118I RCCGGY 2 cut(s) 265, 740
Bse1I ACTGG 1 cut(s) 549
Bse21I CCTNAGG 1 cut(s) 798
Bse8I GATNNNNATC 1 cut(s) 827
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 227, 385, 403
BseGI GGATG 2 cut(s) 301, 463
BseJI GATNNNNATC 1 cut(s) 827
BseLI CCNNNNNNNGG 2 cut(s) 334, 349
BseMII CTCAG 5 cut(s) 223, 678, 812, 848, 979
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 2 cut(s) 278, 906
BseXI GCAGC 3 cut(s) 297, 652, 740
BsgI GTGCAG 1 cut(s) 700
BshFI GGCC 3 cut(s) 408, 485, 744
BshNI GGYRCC 1 cut(s) 14
BshTI ACCGGT 1 cut(s) 265
BsiSI CCGG 4 cut(s) 266, 434, 482, 741
BslI CCNNNNNNNGG 2 cut(s) 334, 349
BsmAI GTCTC 2 cut(s) 239, 840
BsmBI CGTCTC 1 cut(s) 840
BsmI GAATGC 3 cut(s) 338, 939, 1139
BsnI GGCC 3 cut(s) 408, 485, 744
Bsp1407I TGTACA 1 cut(s) 772
Bsp143I GATC 5 cut(s) 430, 602, 822, 1033, 1126
Bsp1720I GCTNAGC 1 cut(s) 1110
BspACI CCGC 3 cut(s) 350, 669, 944
BspANI GGCC 3 cut(s) 408, 485, 744
BspCNI CTCAG 5 cut(s) 222, 679, 811, 847, 978
BspHI TCATGA 2 cut(s) 790, 1036
BspLI GGNNCC 3 cut(s) 16, 114, 391
BspPI GGATC 3 cut(s) 425, 817, 1121
BspT107I GGYRCC 1 cut(s) 14
BsrFI RCCGGY 2 cut(s) 265, 740
BsrGI TGTACA 1 cut(s) 772
BsrI ACTGG 1 cut(s) 549
BssAI RCCGGY 2 cut(s) 265, 740
BssECI CCNNGG 3 cut(s) 227, 385, 403
BssMI GATC 5 cut(s) 430, 602, 822, 1033, 1126
BssNI GRCGYC 1 cut(s) 731
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 965
BstACI GRCGYC 1 cut(s) 731
BstAPI GCANNNNNTGC 1 cut(s) 665
BstAUI TGTACA 1 cut(s) 772
BstC8I GCNNGC 2 cut(s) 706, 937
BstDEI CTNAG 7 cut(s) 209, 617, 687, 798, 834, 965, 1110
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 2 cut(s) 301, 463
BstHHI GCGC 1 cut(s) 988
BstKTI GATC 5 cut(s) 433, 605, 825, 1036, 1129
BstMAI GTCTC 2 cut(s) 239, 840
BstMBI GATC 5 cut(s) 430, 602, 822, 1033, 1126
BstMWI GCNNNNNNNGC 5 cut(s) 104, 566, 665, 714, 750
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 226, 480
BstV1I GCAGC 3 cut(s) 297, 652, 740
Bsu36I CCTNAGG 1 cut(s) 798
BsuRI GGCC 3 cut(s) 408, 485, 744
BtgI CCRYGG 1 cut(s) 385
BtgZI GCGATG 1 cut(s) 875
BtsCI GGATG 2 cut(s) 301, 463
BtsIMutI CAGTG 2 cut(s) 189, 542
Cac8I GCNNGC 2 cut(s) 706, 937
CciI TCATGA 2 cut(s) 790, 1036
CfoI GCGC 1 cut(s) 988
Cfr10I RCCGGY 2 cut(s) 265, 740
Csp6I GTAC 4 cut(s) 15, 773, 925, 1063
CspAI ACCGGT 1 cut(s) 265
CspCI CAANNNNNGTGG 2 cut(s) 367, 402
CviQI GTAC 4 cut(s) 15, 773, 925, 1063
DdeI CTNAG 7 cut(s) 209, 617, 687, 798, 834, 965, 1110
DpnI GATC 5 cut(s) 432, 604, 824, 1035, 1128
DpnII GATC 5 cut(s) 430, 602, 822, 1033, 1126
DraI TTTAAA 1 cut(s) 1147
DraIII CACNNNGTG 1 cut(s) 184
EaeI YGGCCR 3 cut(s) 406, 483, 742
Eam1104I CTCTTC 1 cut(s) 965
EarI CTCTTC 1 cut(s) 965
EciI GGCGGA 1 cut(s) 365
Eco57I CTGAAG 2 cut(s) 102, 1136
Eco81I CCTNAGG 1 cut(s) 798
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 840
Fnu4HI GCNGC 4 cut(s) 311, 666, 669, 754
FokI GGATG 2 cut(s) 308, 470
Fsp4HI GCNGC 4 cut(s) 311, 666, 669, 754
FspBI CTAG 2 cut(s) 587, 785
GlaI GCGC 1 cut(s) 987
GluI GCNGC 4 cut(s) 311, 666, 669, 754
GsuI CTGGAG 2 cut(s) 306, 903
HaeIII GGCC 3 cut(s) 408, 485, 744
HapII CCGG 4 cut(s) 266, 434, 482, 741
HhaI GCGC 1 cut(s) 988
Hin1I GRCGYC 1 cut(s) 731
Hin6I GCGC 1 cut(s) 986
HinP1I GCGC 1 cut(s) 986
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 2 cut(s) 330, 1049
HinfI GANTC 2 cut(s) 285, 523
HpaII CCGG 4 cut(s) 266, 434, 482, 741
HphI GGTGA 3 cut(s) 642, 730, 1112
Hpy166II GTNNAC 2 cut(s) 592, 712
Hpy188I TCNGA 4 cut(s) 82, 642, 837, 994
Hpy188III TCNNGA 6 cut(s) 252, 323, 727, 791, 920, 1037
Hpy8I GTNNAC 2 cut(s) 592, 712
HpyAV CCTTC 1 cut(s) 962
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 731
HpyCH4V TGCA 7 cut(s) 59, 140, 217, 502, 659, 717, 809
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 566, 665, 714, 750
HpyF3I CTNAG 7 cut(s) 209, 617, 687, 798, 834, 965, 1110
HpySE526I ACGT 1 cut(s) 731
Hsp92I GRCGYC 1 cut(s) 731
HspAI GCGC 1 cut(s) 986
KpnI GGTACC 1 cut(s) 18
Kzo9I GATC 5 cut(s) 430, 602, 822, 1033, 1126
LmnI GCTCC 2 cut(s) 118, 318
Lsp1109I GCAGC 3 cut(s) 297, 652, 740
LweI GCATC 3 cut(s) 149, 812, 973
MaeI CTAG 2 cut(s) 587, 785
MaeII ACGT 1 cut(s) 731
MaeIII GTNAC 2 cut(s) 184, 968
MalI GATC 5 cut(s) 432, 604, 824, 1035, 1128
MboI GATC 5 cut(s) 430, 602, 822, 1033, 1126
MboII GAAGA 7 cut(s) 95, 98, 185, 206, 263, 532, 952
MfeI CAATTG 1 cut(s) 624
MluCI AATT 4 cut(s) 222, 461, 624, 748
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 514
MseI TTAA 2 cut(s) 758, 1146
MspA1I CMGCKG 2 cut(s) 608, 671
MspI CCGG 4 cut(s) 266, 434, 482, 741
MspR9I CCNGG 2 cut(s) 228, 482
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 3 cut(s) 338, 939, 1139
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 5 cut(s) 104, 566, 665, 714, 750
NciI CCSGG 1 cut(s) 482
NdeII GATC 5 cut(s) 430, 602, 822, 1033, 1126
NlaIV GGNNCC 3 cut(s) 16, 114, 391
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 598
PagI TCATGA 2 cut(s) 790, 1036
PciI ACATGT 1 cut(s) 594
PctI GAATGC 3 cut(s) 338, 939, 1139
PfeI GAWTC 1 cut(s) 523
PflMI CCANNNNNTGG 1 cut(s) 334
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 4 cut(s) 312, 667, 670, 755
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PscI ACATGT 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 3 cut(s) 16, 114, 391
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 4 cut(s) 16, 774, 926, 1064
RsaNI GTAC 4 cut(s) 15, 773, 925, 1063
SaqAI TTAA 2 cut(s) 758, 1146
SatI GCNGC 4 cut(s) 311, 666, 669, 754
Sau3AI GATC 5 cut(s) 430, 602, 822, 1033, 1126
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 2 cut(s) 228, 482
SfaNI GCATC 3 cut(s) 149, 812, 973
Sse9I AATT 4 cut(s) 222, 461, 624, 748
SsiI CCGC 3 cut(s) 350, 669, 944
SspMI CTAG 2 cut(s) 587, 785
StyD4I CCNGG 2 cut(s) 226, 480
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 734
TaqI TCGA 1 cut(s) 64
TasI AATT 4 cut(s) 222, 461, 624, 748
TatI WGTACW 3 cut(s) 772, 924, 1062
TauI GCSGC 1 cut(s) 671
TfiI GAWTC 1 cut(s) 523
Tru1I TTAA 2 cut(s) 758, 1146
Tru9I TTAA 2 cut(s) 758, 1146
TscAI CASTG 2 cut(s) 189, 549
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 3 cut(s) 310, 665, 753
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 474, 515
TspGWI ACGGA 2 cut(s) 864, 987
TspRI CASTG 2 cut(s) 189, 549
Van91I CCANNNNNTGG 1 cut(s) 334
XapI RAATTY 1 cut(s) 222
XceI RCATGY 1 cut(s) 598
XspI CTAG 2 cut(s) 587, 785
ZraI GACGTC 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.