FvH4_6g41980
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000628
Physical Location & Seq
Reverse (-)
32860643 .. 32862779
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41980.t8

Sequence Viewer

Length: 1233 bp
ATGAAGATGGCGAACATTAGTACCTCTATCATTGTAGTTGTTCTGTTCTGGGGATTAGCAGTTGGGACTAGAACAAAGCTATTTACTGATGAAGATAGGGTTGCTGTTTCAGCACTGGCTTCATCAGATACTGATGGCATTTGTGCATCAATGGTTTTAGCACAAGGCTATCCTTGTGAAGAACACACAGTGACAACAGAAGATGGCTATGTACTCAGTATGCAGAGAATTCCAGCAGGGAAGTCCGGGGAGACATCCGGAAACAAGATACCGGTTCTTCTACAACATGGACTCCTCATGGATGGGATAACATGGCTGCTCCTACCTCCAGACCAAGCTTTGGCATTCCTTTTGGTGGATAATGGGTATGAGGTGTGGATTGCTAATACCCGTGGAACCCAATATAGCCTCGGCCATACATCACTCACACCTGATGATCCGGCTTTCTGGGAATGGTCGTGGGATGAATTGGTCGCTTATGACCTCCCGGCCACATACCAATATGTATATAACCAAGCAGGGCAGAAGATTCATTATGTTGGACATTCACTGGGGACTTTGATTGCTCTTGGTGCTTTTTCAAAAGACCAGCTAGTGAACATGTTGAGATCAGCTGTTTTACTTAGCCCAATTGCTCATGTTGGTCAGATGACCTCGCCCCTTGCAAGAGCTGCTGCTGAAAACTATCTGGCTGAGGCTTTATACAAGGCAGGATATAGAGAATTTAATCCACGATTAGAGGCAATAGTCAAATTTCTTAATGCATCATGTGCAAAATCAGGCGTTGACTGCACAAACTTGTTAACTTCTTTCACAGGCCAGAATTGCTGCTTAAATCCATCCATAGTACAAGTCTTTCTAGCTCATGAGCCTCAGGCATCTGCAACTAAAAACATGATTCATATCTCTCAGATGATAAGAGATGGAAAAGTTGCAATGTTTGACTACATTGACAAGGATGAGAACCAAAAACATTACGGGCAGGACACTCCTCCAGAGTACAAAATGGCAAGCATTCCGCATGACCTTCCTCTCTTCCTCAGTTACGGAGGGGCAGATGCGCTTTCTGATGTCCAAGATGTGAAGCTACTGCTCAACAGCCTCAAAGATCATGATGGTGATAAGCTTGTGGTTCAGTACAGAGATGATTATGCTCATGCTGATTTTGTCATGGGTGAAACTGCTAAGCAAGATGTATATGATCCTCTCCTGGCTTTCTTTAGACTTCAGTGA

Protein Analysis

411

Amino Acids

45.22

Weight (kDa)

4.97

Isoelectric Point (pI)

21.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 1 - 34 7.5e-07 Partial alpha/beta-hydrolase lipase region
Abhydrolase_1 PF00561 18 - 157 4.2e-09 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 19 - 167 8.1e-07 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000628)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14180 AT5G14180 AT5G14180 AT5G14180 AT5G14180
fragaria_vesca FvH4_6g41960 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g53200
malus_domestica MD09G1013100.v1.1 MD09G1115500.v1.1 MD09G1115600.v1.1 MD09G1115800.v1.1 MD17G1013800.v1.1 MD17G1107400.v1.1
prunus_persica Prupe.3G208900_v2.0.a1 Prupe.3G208900_v2.0.a1 Prupe.3G304100_v2.0.a1
pyrus_communis pycom09g04000 pycom09g04020 pycom09g04040 pycom111g01090 pycom111g01110 pycom17g01090 pycom17g10010
rosa_chinensis RchiOBHm_Chr2g0157861 RchiOBHm_Chr2g0157881 RchiOBHm_Chr2g0175241 RchiOBHm_Chr2g0175251
rosa_laevigata RLG00000021032 RLG00000021033 RLG00000022314 RLG00000022315
rosa_multiflora Rmu_co8368271.1_g000001 Rmu_co8519319.1_g000001 Rmu_co8519319.1_g000002 Rmu_sc0002441.1_g000007 Rmu_sc0002441.1_g000008 Rmu_sc0010083.1_g000002 Rmu_sc0015795.1_g000001 Rmu_sc0015795.1_g000002
rosa_roxburghii Rroxscaffold_1G00036740 Rroxscaffold_2G00077450 Rroxscaffold_2G00077460 Rroxscaffold_2G00091880 Rroxscaffold_2G00091890 Rroxscaffold_2G00127210
rosa_rugosa Rorug02G0464200 Rorug02G0464200 Rorug02G0582000 Rorug02G0582100 Rorug02G0582100 Rorug02G0582100 Rorug02G0582200 Rorug02G0582200 Rorug02G0582200
rosa_samantha Rh2AG529400 Rh2AG529500 Rh2AG662400 Rh2AG662500 Rh2BG544000 Rh2BG544100 Rh2BG673600 Rh2BG673700 Rh2CG513700 Rh2CG513800 Rh2CG636800 Rh2DG552400
rosa_wichuraiana Rw2G043800 Rw2G043810 Rw2G054330 Rw2G054340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 340
AccIII TCCGGA 1 cut(s) 257
AciI CCGC 1 cut(s) 1019
AclWI GGATC 2 cut(s) 431, 1196
AcoI YGGCCR 2 cut(s) 412, 489
AcsI RAATTY 3 cut(s) 228, 722, 752
AcuI CTGAAG 1 cut(s) 1211
AdeI CACNNNGTG 1 cut(s) 190
AfaI GTAC 5 cut(s) 22, 213, 849, 1001, 1139
AfiI CCNNNNNNNGG 2 cut(s) 340, 355
AflIII ACRYGT 1 cut(s) 600
AgeI ACCGGT 1 cut(s) 271
AgsI TTSAA 1 cut(s) 582
AjnI CCWGG 1 cut(s) 1209
AluBI AGCT 8 cut(s) 79, 338, 592, 614, 671, 863, 1087, 1126
AluI AGCT 8 cut(s) 79, 338, 592, 614, 671, 863, 1087, 1126
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 2 cut(s) 431, 1196
AlwNI CAGNNNCTG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 257
AoxI GGCC 3 cut(s) 412, 489, 817
ApeKI GCWGC 4 cut(s) 316, 671, 674, 828
ApoI RAATTY 3 cut(s) 228, 722, 752
AsiGI ACCGGT 1 cut(s) 271
AspLEI GCGC 1 cut(s) 1063
AsuC2I CCSGG 2 cut(s) 247, 488
AsuHPI GGTGA 2 cut(s) 1130, 1187
AxyI CCTNAGG 1 cut(s) 873
BaeI ACNNNNGTAYC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 693
BbvI GCAGC 4 cut(s) 303, 658, 661, 815
BccI CCATC 6 cut(s) 128, 197, 296, 847, 917, 1109
BciT130I CCWGG 1 cut(s) 1211
BcnI CCSGG 2 cut(s) 247, 488
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 3 cut(s) 69, 593, 860
BisI GCNGC 4 cut(s) 317, 672, 675, 829
BlpI GCTNAGC 1 cut(s) 1185
BlsI GCNGC 4 cut(s) 318, 673, 676, 830
Bme1390I CCNGG 3 cut(s) 247, 488, 1211
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 3 cut(s) 247, 488, 1211
BmrI ACTGGG 1 cut(s) 560
BmsI GCATC 4 cut(s) 155, 773, 887, 1048
BmuI ACTGGG 1 cut(s) 560
BpmI CTGGAG 2 cut(s) 312, 978
Bpu10I CCTNAGC 1 cut(s) 693
Bpu1102I GCTNAGC 1 cut(s) 1185
BpuMI CCSGG 2 cut(s) 247, 488
BsaBI GATNNNNATC 1 cut(s) 902
BsaJI CCNNGG 3 cut(s) 246, 391, 409
BsaWI WCCGGW 2 cut(s) 257, 271
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 355
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 2 cut(s) 120, 555
Bse21I CCTNAGG 1 cut(s) 873
Bse3DI GCAATG 1 cut(s) 942
Bse8I GATNNNNATC 1 cut(s) 902
BseAI TCCGGA 1 cut(s) 257
BseBI CCWGG 1 cut(s) 1211
BseDI CCNNGG 3 cut(s) 246, 391, 409
BseGI GGATG 5 cut(s) 254, 307, 469, 839, 964
BseJI GATNNNNATC 1 cut(s) 902
BseLI CCNNNNNNNGG 2 cut(s) 340, 355
BseMI GCAATG 1 cut(s) 942
BseMII CTCAG 5 cut(s) 229, 684, 887, 923, 1054
BseNI ACTGG 2 cut(s) 120, 555
BseRI GAGGAG 2 cut(s) 284, 981
BseXI GCAGC 4 cut(s) 303, 658, 661, 815
BsgI GTGCAG 1 cut(s) 775
BshFI GGCC 3 cut(s) 414, 491, 819
BshTI ACCGGT 1 cut(s) 271
BsiSI CCGG 5 cut(s) 246, 258, 272, 440, 488
BslFI GGGAC 2 cut(s) 79, 568
BslI CCNNNNNNNGG 2 cut(s) 340, 355
BsmAI GTCTC 1 cut(s) 245
BsmFI GGGAC 2 cut(s) 79, 568
BsmI GAATGC 2 cut(s) 344, 1014
BsnI GGCC 3 cut(s) 414, 491, 819
Bsp13I TCCGGA 1 cut(s) 257
Bsp143I GATC 4 cut(s) 436, 608, 1108, 1201
Bsp1720I GCTNAGC 1 cut(s) 1185
BspACI CCGC 1 cut(s) 1019
BspANI GGCC 3 cut(s) 414, 491, 819
BspCNI CTCAG 5 cut(s) 228, 685, 886, 922, 1053
BspEI TCCGGA 1 cut(s) 257
BspHI TCATGA 2 cut(s) 865, 1111
BspLI GGNNCC 1 cut(s) 397
BspPI GGATC 2 cut(s) 431, 1196
BsrDI GCAATG 1 cut(s) 942
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 2 cut(s) 120, 555
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 3 cut(s) 246, 391, 409
BssMI GATC 4 cut(s) 436, 608, 1108, 1201
Bst2UI CCWGG 1 cut(s) 1211
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 1040
BstAPI GCANNNNNTGC 2 cut(s) 671, 770
BstC8I GCNNGC 1 cut(s) 1012
BstDEI CTNAG 7 cut(s) 215, 623, 693, 873, 909, 1040, 1185
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 5 cut(s) 254, 307, 469, 839, 964
BstHHI GCGC 1 cut(s) 1063
BstKTI GATC 4 cut(s) 439, 611, 1111, 1204
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 4 cut(s) 436, 608, 1108, 1201
BstMWI GCNNNNNNNGC 6 cut(s) 110, 572, 671, 770, 789, 825
BstNI CCWGG 1 cut(s) 1211
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 3 cut(s) 245, 486, 1209
BstV1I GCAGC 4 cut(s) 303, 658, 661, 815
Bsu36I CCTNAGG 1 cut(s) 873
BsuRI GGCC 3 cut(s) 414, 491, 819
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 5 cut(s) 254, 307, 469, 839, 964
BtsIMutI CAGTG 3 cut(s) 113, 195, 548
Cac8I GCNNGC 1 cut(s) 1012
CaiI CAGNNNCTG 1 cut(s) 131
CciI TCATGA 2 cut(s) 865, 1111
CfoI GCGC 1 cut(s) 1063
Cfr10I RCCGGY 1 cut(s) 271
Csp6I GTAC 5 cut(s) 21, 212, 848, 1000, 1138
CspAI ACCGGT 1 cut(s) 271
CviQI GTAC 5 cut(s) 21, 212, 848, 1000, 1138
DdeI CTNAG 7 cut(s) 215, 623, 693, 873, 909, 1040, 1185
DpnI GATC 4 cut(s) 438, 610, 1110, 1203
DpnII GATC 4 cut(s) 436, 608, 1108, 1201
DraIII CACNNNGTG 1 cut(s) 190
EaeI YGGCCR 2 cut(s) 412, 489
Eam1104I CTCTTC 1 cut(s) 1040
EarI CTCTTC 1 cut(s) 1040
Eco57I CTGAAG 1 cut(s) 1211
Eco81I CCTNAGG 1 cut(s) 873
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 1209
EcoT22I ATGCAT 1 cut(s) 766
FaqI GGGAC 2 cut(s) 79, 568
Fnu4HI GCNGC 4 cut(s) 317, 672, 675, 829
FokI GGATG 5 cut(s) 241, 314, 476, 826, 971
Fsp4HI GCNGC 4 cut(s) 317, 672, 675, 829
FspBI CTAG 3 cut(s) 69, 593, 860
GlaI GCGC 1 cut(s) 1062
GluI GCNGC 4 cut(s) 317, 672, 675, 829
GsuI CTGGAG 2 cut(s) 312, 978
HaeIII GGCC 3 cut(s) 414, 491, 819
HapII CCGG 5 cut(s) 246, 258, 272, 440, 488
HhaI GCGC 1 cut(s) 1063
Hin6I GCGC 1 cut(s) 1061
HinP1I GCGC 1 cut(s) 1061
HincII GTYRAC 2 cut(s) 787, 804
HindII GTYRAC 2 cut(s) 787, 804
HindIII AAGCTT 2 cut(s) 336, 1124
HinfI GANTC 3 cut(s) 291, 529, 898
HpaI GTTAAC 1 cut(s) 804
HpaII CCGG 5 cut(s) 246, 258, 272, 440, 488
HphI GGTGA 2 cut(s) 1130, 1187
Hpy166II GTNNAC 3 cut(s) 598, 787, 804
Hpy188I TCNGA 4 cut(s) 127, 648, 912, 1069
Hpy188III TCNNGA 5 cut(s) 258, 329, 866, 995, 1112
Hpy8I GTNNAC 3 cut(s) 598, 787, 804
HpyAV CCTTC 1 cut(s) 1037
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 8 cut(s) 146, 223, 665, 764, 773, 792, 884, 935
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 572, 671, 770, 789, 825
HpyF3I CTNAG 7 cut(s) 215, 623, 693, 873, 909, 1040, 1185
HspAI GCGC 1 cut(s) 1061
Kpn2I TCCGGA 1 cut(s) 257
KspAI GTTAAC 1 cut(s) 804
Kzo9I GATC 4 cut(s) 436, 608, 1108, 1201
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 4 cut(s) 303, 658, 661, 815
LweI GCATC 4 cut(s) 155, 773, 887, 1048
MaeI CTAG 3 cut(s) 69, 593, 860
MaeIII GTNAC 2 cut(s) 190, 1043
MalI GATC 4 cut(s) 438, 610, 1110, 1203
MboI GATC 4 cut(s) 436, 608, 1108, 1201
MboII GAAGA 7 cut(s) 16, 104, 191, 212, 269, 538, 1027
MfeI CAATTG 1 cut(s) 630
MluCI AATT 6 cut(s) 228, 467, 630, 722, 752, 823
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 520
Mph1103I ATGCAT 1 cut(s) 766
MroI TCCGGA 1 cut(s) 257
MseI TTAA 4 cut(s) 726, 759, 803, 833
MslI CAYNNNNRTG 1 cut(s) 1116
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 5 cut(s) 246, 258, 272, 440, 488
MspR9I CCNGG 3 cut(s) 247, 488, 1211
MunI CAATTG 1 cut(s) 630
Mva1269I GAATGC 2 cut(s) 344, 1014
MvaI CCWGG 1 cut(s) 1211
MwoI GCNNNNNNNGC 6 cut(s) 110, 572, 671, 770, 789, 825
NciI CCSGG 2 cut(s) 247, 488
NdeII GATC 4 cut(s) 436, 608, 1108, 1201
NlaIV GGNNCC 1 cut(s) 397
NmeAIII GCCGAG 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 766
NspI RCATGY 1 cut(s) 604
PagI TCATGA 2 cut(s) 865, 1111
PciI ACATGT 1 cut(s) 600
PctI GAATGC 2 cut(s) 344, 1014
PfeI GAWTC 2 cut(s) 529, 898
PflMI CCANNNNNTGG 1 cut(s) 340
PinAI ACCGGT 1 cut(s) 271
PkrI GCNGC 4 cut(s) 318, 673, 676, 830
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PscI ACATGT 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 1209
PspGI CCWGG 1 cut(s) 1209
PspN4I GGNNCC 1 cut(s) 397
PstNI CAGNNNCTG 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 5 cut(s) 22, 213, 849, 1001, 1139
RsaNI GTAC 5 cut(s) 21, 212, 848, 1000, 1138
RseI CAYNNNNRTG 1 cut(s) 1116
SaqAI TTAA 4 cut(s) 726, 759, 803, 833
SatI GCNGC 4 cut(s) 317, 672, 675, 829
Sau3AI GATC 4 cut(s) 436, 608, 1108, 1201
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 3 cut(s) 247, 488, 1211
SfaNI GCATC 4 cut(s) 155, 773, 887, 1048
SmiMI CAYNNNNRTG 1 cut(s) 1116
Sse9I AATT 6 cut(s) 228, 467, 630, 722, 752, 823
SsiI CCGC 1 cut(s) 1019
SspMI CTAG 3 cut(s) 69, 593, 860
StyD4I CCNGG 3 cut(s) 245, 486, 1209
TaaI ACNGT 1 cut(s) 190
TasI AATT 6 cut(s) 228, 467, 630, 722, 752, 823
TatI WGTACW 4 cut(s) 211, 847, 999, 1137
TfiI GAWTC 2 cut(s) 529, 898
Tru1I TTAA 4 cut(s) 726, 759, 803, 833
Tru9I TTAA 4 cut(s) 726, 759, 803, 833
TscAI CASTG 3 cut(s) 120, 195, 555
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 4 cut(s) 316, 671, 674, 828
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 6 cut(s) 17, 105, 111, 480, 521, 890
TspGWI ACGGA 1 cut(s) 1062
TspRI CASTG 3 cut(s) 120, 195, 555
Van91I CCANNNNNTGG 1 cut(s) 340
XapI RAATTY 3 cut(s) 228, 722, 752
XceI RCATGY 1 cut(s) 604
XspI CTAG 3 cut(s) 69, 593, 860
Zsp2I ATGCAT 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.