Rmu_sc0010083.1_g000002
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010083.1
OG0000628
Physical Location & Seq
Forward (+)
3955 .. 11303
7349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010083.1_g000002.1.cds

Sequence Viewer

Length: 1077 bp
atgggtacatgtgcttcggctcatagggaatccgggtcggccatgaaactcggaatgtctttcgggtccaaaccggacacgctctcctctattctaccgtccccggtcaaagagaaaccgacgacaaacggcggccgtccgatcaacgatgaatggtcgcctgctcgccccacagccacggctttccgagactacgctgatagtggatttgatgtgtggatggctaacaccagagggaccagatttagccggcggcatacttccatggaccccagcaatccgaaattttggaattggtcttgggatgaactggtggctcatgacctaccagctgtttttaattacgtgcatggccaaacaaaacagaagattaactacgtcggtcattccctggggactttgttagcattggcttcgctttcagaagggaagttagtggatcagctgaaatcagtagctttgctaagtcccattgcgtacttgactcacatgagtacaccaattggtgcggttggggccagactctttgccggcgagatcacaacggcatttggttttgcagagttcgatccaaaaggggagccagtggctgaattcctagatcgtctatgtgccactccaggagttccatgttacgacatattatcagtactcaccggcaaaaattgttgtctcaatgcttccactgttgatctcttcttggatcatcagcctcagccaacatcaaccaagaccatggtgcacctgtctcaagttgttcgaaatggcgttttgatgaaatacgactacgggcgtttcgaccttaattatatgcattatggttcattttccgctccgcattacgatctttctaaaattccgaacaacctgcccatgttcatcacctacggcggccaagatgcgctctccgatgaacacgacgtgtcgcgtttacttgaatatttgaagtctcacgacgtgggaaagctcgtggttgatttcatccatgagtatgcccatgccgattttgtcatggggatcaatgccaaggaccttgtgtataataaagtgatttctttcttcaaccagcaacagtaa

Protein Analysis

358

Amino Acids

39.61

Weight (kDa)

6.26

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000628)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14180 AT5G14180 AT5G14180 AT5G14180 AT5G14180
fragaria_vesca FvH4_6g41960 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g41980 FvH4_6g53200
malus_domestica MD09G1013100.v1.1 MD09G1115500.v1.1 MD09G1115600.v1.1 MD09G1115800.v1.1 MD17G1013800.v1.1 MD17G1107400.v1.1
prunus_persica Prupe.3G208900_v2.0.a1 Prupe.3G208900_v2.0.a1 Prupe.3G304100_v2.0.a1
pyrus_communis pycom09g04000 pycom09g04020 pycom09g04040 pycom111g01090 pycom111g01110 pycom17g01090 pycom17g10010
rosa_chinensis RchiOBHm_Chr2g0157861 RchiOBHm_Chr2g0157881 RchiOBHm_Chr2g0175241 RchiOBHm_Chr2g0175251
rosa_laevigata RLG00000021032 RLG00000021033 RLG00000022314 RLG00000022315
rosa_multiflora Rmu_co8368271.1_g000001 Rmu_co8519319.1_g000001 Rmu_co8519319.1_g000002 Rmu_sc0002441.1_g000007 Rmu_sc0002441.1_g000008 Rmu_sc0010083.1_g000002 Rmu_sc0015795.1_g000001 Rmu_sc0015795.1_g000002
rosa_roxburghii Rroxscaffold_1G00036740 Rroxscaffold_2G00077450 Rroxscaffold_2G00077460 Rroxscaffold_2G00091880 Rroxscaffold_2G00091890 Rroxscaffold_2G00127210
rosa_rugosa Rorug02G0464200 Rorug02G0464200 Rorug02G0582000 Rorug02G0582100 Rorug02G0582100 Rorug02G0582100 Rorug02G0582200 Rorug02G0582200 Rorug02G0582200
rosa_samantha Rh2AG529400 Rh2AG529500 Rh2AG662400 Rh2AG662500 Rh2BG544000 Rh2BG544100 Rh2BG673600 Rh2BG673700 Rh2CG513700 Rh2CG513800 Rh2CG636800 Rh2DG552400
rosa_wichuraiana Rw2G043800 Rw2G043810 Rw2G054330 Rw2G054340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 876
AccBSI CCGCTC 1 cut(s) 833
AccII CGCG 1 cut(s) 928
AciI CCGC 6 cut(s) 132, 253, 509, 831, 836, 891
AclWI GGATC 4 cut(s) 447, 563, 711, 1025
AcoI YGGCCR 4 cut(s) 39, 133, 352, 892
AcsI RAATTY 3 cut(s) 284, 593, 855
AdeI CACNNNGTG 2 cut(s) 922, 958
AfaI GTAC 4 cut(s) 7, 479, 496, 651
AflIII ACRYGT 2 cut(s) 8, 921
AgsI TTSAA 3 cut(s) 938, 946, 1063
AjiI CACGTC 2 cut(s) 922, 958
AjnI CCWGG 2 cut(s) 390, 619
AluBI AGCT 4 cut(s) 332, 445, 458, 967
AluI AGCT 4 cut(s) 332, 445, 458, 967
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 4 cut(s) 183, 677, 753, 954
Alw44I GTGCAC 1 cut(s) 740
AlwI GGATC 4 cut(s) 447, 563, 711, 1025
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 5 cut(s) 39, 133, 352, 516, 892
ApaLI GTGCAC 1 cut(s) 740
ApoI RAATTY 3 cut(s) 284, 593, 855
AspLEI GCGC 1 cut(s) 904
AspS9I GGNCC 5 cut(s) 66, 237, 268, 516, 1030
AsuC2I CCSGG 2 cut(s) 34, 104
AsuHPI GGTGA 2 cut(s) 646, 874
AsuII TTCGAA 1 cut(s) 760
AvaII GGWCC 4 cut(s) 66, 237, 268, 1030
BaeGI GKGCMC 1 cut(s) 744
BalI TGGCCA 1 cut(s) 354
BarI GAAGNNNNNNTAC 3 cut(s) 30, 359, 391
BauI CACGAG 1 cut(s) 968
Bbv12I GWGCWC 1 cut(s) 744
BbvCI CCTCAGC 1 cut(s) 714
BccI CCATC 1 cut(s) 214
BceAI ACGGC 5 cut(s) 120, 145, 195, 561, 904
BcgI CGANNNNNNTGC 4 cut(s) 396, 430, 850, 884
BciT130I CCWGG 2 cut(s) 392, 621
BcnI CCSGG 2 cut(s) 34, 104
BcoDI GTCTC 4 cut(s) 183, 677, 753, 954
BfaI CTAG 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 876
BisI GCNGC 3 cut(s) 133, 254, 892
BlsI GCNGC 3 cut(s) 134, 255, 893
BmcAI AGTACT 1 cut(s) 651
Bme1390I CCNGG 4 cut(s) 34, 104, 392, 621
Bme18I GGWCC 4 cut(s) 66, 237, 268, 1030
BmgBI CACGTC 2 cut(s) 922, 958
BmgT120I GGNCC 5 cut(s) 66, 237, 268, 516, 1030
BmiI GGNNCC 5 cut(s) 67, 238, 270, 517, 582
BmrFI CCNGG 4 cut(s) 34, 104, 392, 621
BmsI GCATC 1 cut(s) 889
BpmI CTGGAG 1 cut(s) 603
Bpu10I CCTNAGC 1 cut(s) 714
Bpu14I TTCGAA 1 cut(s) 760
BpuEI CTTGAG 1 cut(s) 735
BpuMI CCSGG 2 cut(s) 34, 104
BsaAI YACGTR 1 cut(s) 346
BsaJI CCNNGG 7 cut(s) 102, 177, 264, 390, 391, 735, 1026
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bse118I RCCGGY 3 cut(s) 249, 530, 656
Bse1I ACTGG 2 cut(s) 315, 584
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 2 cut(s) 392, 621
BseDI CCNNGG 7 cut(s) 102, 177, 264, 390, 391, 735, 1026
BseGI GGATG 3 cut(s) 225, 310, 981
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 1 cut(s) 728
BseNI ACTGG 2 cut(s) 315, 584
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 744
BseX3I CGGCCG 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 928
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 5 cut(s) 41, 135, 354, 518, 894
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 744
BsiSI CCGG 6 cut(s) 33, 74, 104, 250, 531, 657
BslFI GGGAC 4 cut(s) 85, 250, 409, 453
BsmAI GTCTC 4 cut(s) 183, 677, 753, 954
BsmFI GGGAC 4 cut(s) 85, 250, 409, 453
BsnI GGCC 5 cut(s) 41, 135, 354, 518, 894
Bsp119I TTCGAA 1 cut(s) 760
Bsp1286I GDGCHC 1 cut(s) 744
Bsp143I GATC 9 cut(s) 141, 439, 537, 568, 601, 691, 703, 844, 1017
Bsp19I CCATGG 2 cut(s) 264, 735
BspACI CCGC 6 cut(s) 132, 253, 509, 831, 836, 891
BspANI GGCC 5 cut(s) 41, 135, 354, 518, 894
BspCNI CTCAG 1 cut(s) 727
BspFNI CGCG 1 cut(s) 928
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 5 cut(s) 67, 238, 270, 517, 582
BspMI ACCTGC 1 cut(s) 876
BspPI GGATC 4 cut(s) 447, 563, 711, 1025
BspT104I TTCGAA 1 cut(s) 760
BsrBI CCGCTC 1 cut(s) 833
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 3 cut(s) 249, 530, 656
BsrI ACTGG 2 cut(s) 315, 584
BssAI RCCGGY 3 cut(s) 249, 530, 656
BssECI CCNNGG 7 cut(s) 102, 177, 264, 390, 391, 735, 1026
BssMI GATC 9 cut(s) 141, 439, 537, 568, 601, 691, 703, 844, 1017
BssSI CACGAG 1 cut(s) 968
BssT1I CCWWGG 3 cut(s) 264, 735, 1026
Bst2BI CACGAG 1 cut(s) 968
Bst2UI CCWGG 2 cut(s) 392, 621
Bst4CI ACNGT 3 cut(s) 99, 688, 1074
Bst6I CTCTTC 1 cut(s) 701
BstBAI YACGTR 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 760
BstC8I GCNNGC 4 cut(s) 162, 166, 251, 532
BstDEI CTNAG 2 cut(s) 464, 714
BstDSI CCRYGG 3 cut(s) 177, 264, 735
BstF5I GGATG 3 cut(s) 225, 310, 981
BstFNI CGCG 1 cut(s) 928
BstHHI GCGC 1 cut(s) 904
BstKTI GATC 9 cut(s) 144, 442, 540, 571, 604, 694, 706, 847, 1020
BstMAI GTCTC 4 cut(s) 183, 677, 753, 954
BstMBI GATC 9 cut(s) 141, 439, 537, 568, 601, 691, 703, 844, 1017
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNI CCWGG 2 cut(s) 392, 621
BstNSI RCATGY 1 cut(s) 12
BstSCI CCNGG 4 cut(s) 32, 102, 390, 619
BstSLI GKGCMC 1 cut(s) 744
BstUI CGCG 1 cut(s) 928
BstXI CCANNNNNNTGG 1 cut(s) 736
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 5 cut(s) 41, 135, 354, 518, 894
BtgI CCRYGG 3 cut(s) 177, 264, 735
BtrI CACGTC 2 cut(s) 922, 958
BtsCI GGATG 3 cut(s) 225, 310, 981
BtsIMutI CAGTG 2 cut(s) 591, 684
BveI ACCTGC 1 cut(s) 876
Cac8I GCNNGC 4 cut(s) 162, 166, 251, 532
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 319
CfoI GCGC 1 cut(s) 904
Cfr10I RCCGGY 3 cut(s) 249, 530, 656
Cfr13I GGNCC 5 cut(s) 66, 237, 268, 516, 1030
Csp6I GTAC 4 cut(s) 6, 478, 495, 650
CviQI GTAC 4 cut(s) 6, 478, 495, 650
DdeI CTNAG 2 cut(s) 464, 714
DpnI GATC 9 cut(s) 143, 441, 539, 570, 603, 693, 705, 846, 1019
DpnII GATC 9 cut(s) 141, 439, 537, 568, 601, 691, 703, 844, 1017
DraIII CACNNNGTG 2 cut(s) 922, 958
EaeI YGGCCR 4 cut(s) 39, 133, 352, 892
EagI CGGCCG 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
EclXI CGGCCG 1 cut(s) 133
Eco130I CCWWGG 3 cut(s) 264, 735, 1026
Eco47I GGWCC 4 cut(s) 66, 237, 268, 1030
Eco52I CGGCCG 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 1030
EcoRI GAATTC 1 cut(s) 593
EcoRII CCWGG 2 cut(s) 390, 619
EcoT14I CCWWGG 3 cut(s) 264, 735, 1026
EcoT22I ATGCAT 1 cut(s) 816
ErhI CCWWGG 3 cut(s) 264, 735, 1026
FaqI GGGAC 4 cut(s) 85, 250, 409, 453
Fnu4HI GCNGC 3 cut(s) 133, 254, 892
FokI GGATG 3 cut(s) 232, 317, 968
Fsp4HI GCNGC 3 cut(s) 133, 254, 892
FspBI CTAG 1 cut(s) 599
GlaI GCGC 1 cut(s) 903
GluI GCNGC 3 cut(s) 133, 254, 892
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 5 cut(s) 41, 135, 354, 518, 894
HapII CCGG 6 cut(s) 33, 74, 104, 250, 531, 657
HhaI GCGC 1 cut(s) 904
Hin6I GCGC 1 cut(s) 902
HinP1I GCGC 1 cut(s) 902
HinfI GANTC 3 cut(s) 29, 484, 522
HpaII CCGG 6 cut(s) 33, 74, 104, 250, 531, 657
HphI GGTGA 2 cut(s) 646, 874
Hpy166II GTNNAC 3 cut(s) 497, 742, 932
Hpy188I TCNGA 7 cut(s) 53, 141, 188, 282, 424, 861, 910
Hpy188III TCNNGA 2 cut(s) 320, 953
Hpy8I GTNNAC 3 cut(s) 497, 742, 932
Hpy99I CGWCG 4 cut(s) 124, 383, 923, 959
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 3 cut(s) 99, 688, 1074
HpyCH4IV ACGT 4 cut(s) 345, 378, 921, 957
HpyCH4V TGCA 4 cut(s) 349, 560, 742, 814
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 2 cut(s) 464, 714
HpySE526I ACGT 4 cut(s) 345, 378, 921, 957
HspAI GCGC 1 cut(s) 902
KroI GCCGGC 2 cut(s) 249, 530
KroNI GCCGGC 2 cut(s) 251, 532
Kzo9I GATC 9 cut(s) 141, 439, 537, 568, 601, 691, 703, 844, 1017
LmnI GCTCC 2 cut(s) 580, 838
LweI GCATC 1 cut(s) 889
MaeI CTAG 1 cut(s) 599
MaeII ACGT 4 cut(s) 345, 378, 921, 957
MaeIII GTNAC 1 cut(s) 632
MalI GATC 9 cut(s) 143, 441, 539, 570, 603, 693, 705, 846, 1019
MbiI CCGCTC 1 cut(s) 833
MboI GATC 9 cut(s) 141, 439, 537, 568, 601, 691, 703, 844, 1017
MboII GAAGA 3 cut(s) 379, 688, 1051
MfeI CAATTG 1 cut(s) 501
MhlI GDGCHC 1 cut(s) 744
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 8 cut(s) 284, 292, 340, 501, 593, 664, 805, 855
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 2 cut(s) 478, 516
MnlI CCTC 3 cut(s) 97, 227, 723
Mox20I TGGCCA 1 cut(s) 354
Mph1103I ATGCAT 1 cut(s) 816
MroNI GCCGGC 2 cut(s) 249, 530
MscI TGGCCA 1 cut(s) 354
MseI TTAA 3 cut(s) 339, 372, 804
MslI CAYNNNNRTG 1 cut(s) 990
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 2 cut(s) 332, 445
MspI CCGG 6 cut(s) 33, 74, 104, 250, 531, 657
MspR9I CCNGG 4 cut(s) 34, 104, 392, 621
MunI CAATTG 1 cut(s) 501
MvaI CCWGG 2 cut(s) 392, 621
MvnI CGCG 1 cut(s) 928
MwoI GCNNNNNNNGC 1 cut(s) 515
NaeI GCCGGC 2 cut(s) 251, 532
NciI CCSGG 2 cut(s) 34, 104
NcoI CCATGG 2 cut(s) 264, 735
NdeII GATC 9 cut(s) 141, 439, 537, 568, 601, 691, 703, 844, 1017
NgoMIV GCCGGC 2 cut(s) 249, 530
NlaIV GGNNCC 5 cut(s) 67, 238, 270, 517, 582
NsiI ATGCAT 1 cut(s) 816
NspI RCATGY 1 cut(s) 12
NspV TTCGAA 1 cut(s) 760
PagI TCATGA 1 cut(s) 319
PasI CCCWGGG 1 cut(s) 391
PciI ACATGT 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 795
PdiI GCCGGC 2 cut(s) 251, 532
PfeI GAWTC 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 619
PkrI GCNGC 3 cut(s) 134, 255, 893
PleI GAGTC 2 cut(s) 478, 516
PpsI GAGTC 2 cut(s) 478, 516
Ppu21I YACGTR 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 1030
PscI ACATGT 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 1030
Psp6I CCWGG 2 cut(s) 390, 619
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 390, 619
PspN4I GGNNCC 5 cut(s) 67, 238, 270, 517, 582
PspPI GGNCC 5 cut(s) 66, 237, 268, 516, 1030
PspPPI RGGWCCY 1 cut(s) 1030
PstNI CAGNNNCTG 1 cut(s) 590
PvuII CAGCTG 2 cut(s) 332, 445
RsaI GTAC 4 cut(s) 7, 479, 496, 651
RsaNI GTAC 4 cut(s) 6, 478, 495, 650
RseI CAYNNNNRTG 1 cut(s) 990
SaqAI TTAA 3 cut(s) 339, 372, 804
SatI GCNGC 3 cut(s) 133, 254, 892
Sau3AI GATC 9 cut(s) 141, 439, 537, 568, 601, 691, 703, 844, 1017
Sau96I GGNCC 5 cut(s) 66, 237, 268, 516, 1030
ScaI AGTACT 1 cut(s) 651
SchI GAGTC 2 cut(s) 478, 516
ScrFI CCNGG 4 cut(s) 34, 104, 392, 621
SduI GDGCHC 1 cut(s) 744
SfaNI GCATC 1 cut(s) 889
SfuI TTCGAA 1 cut(s) 760
SinI GGWCC 4 cut(s) 66, 237, 268, 1030
SmiMI CAYNNNNRTG 1 cut(s) 990
SmlI CTYRAG 1 cut(s) 750
SmoI CTYRAG 1 cut(s) 750
Sse9I AATT 8 cut(s) 284, 292, 340, 501, 593, 664, 805, 855
SsiI CCGC 6 cut(s) 132, 253, 509, 831, 836, 891
SspI AATATT 1 cut(s) 941
SspMI CTAG 1 cut(s) 599
StyD4I CCNGG 4 cut(s) 32, 102, 390, 619
StyI CCWWGG 3 cut(s) 264, 735, 1026
TaaI ACNGT 3 cut(s) 99, 688, 1074
TaiI ACGT 4 cut(s) 348, 381, 924, 960
TaqI TCGA 3 cut(s) 567, 760, 798
TaqII GACCGA 1 cut(s) 371
TasI AATT 8 cut(s) 284, 292, 340, 501, 593, 664, 805, 855
TatI WGTACW 2 cut(s) 494, 649
TauI GCSGC 3 cut(s) 135, 256, 894
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 339, 372, 804
Tru9I TTAA 3 cut(s) 339, 372, 804
TscAI CASTG 2 cut(s) 591, 691
TspDTI ATGAA 8 cut(s) 59, 165, 321, 791, 813, 868, 927, 970
TspRI CASTG 2 cut(s) 591, 691
VneI GTGCAC 1 cut(s) 740
VpaK11BI GGWCC 4 cut(s) 66, 237, 268, 1030
XapI RAATTY 3 cut(s) 284, 593, 855
XceI RCATGY 1 cut(s) 12
XspI CTAG 1 cut(s) 599
ZrmI AGTACT 1 cut(s) 651
Zsp2I ATGCAT 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.